Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013119

Physical Location & Seq

Genomic Coordinates Forward (+)

2124155 .. 2126156

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTCTTGTTCAATCCAGAACTTTTCCACACCTCAACACTCCGTTATCGCCGATTCTATCCTCCCTCCATGCTCCGTCTTCTCTCTTTATCCGGAGGGAAATCCGACCGGTAGCCGCGCCGTTCTCCTCCTCCACCGCCGGAAACTTGCCCTTCTCGCCGTTGACGCGTCCGCGAAAGCTTCTCTGTCCTCCGCCTCGCGGCAAGTTTGTCAGAGAAGATTATCTTGTGAAGAAATTGTCAGCTCAAGAACTTCAGGAACTGGTGAAAGGAGATAGGAAGGTGCCGTTGATTGTTGATTTTTATGCGACATGGTGTGGACCTTGTATCTTGATGGCCCAGGAACTAGAAATGCTTGCAGTAGAGTATGAGAGCAATGCAATAATCGTGAAAGTTGATACAGATGATGAGTACGAGTTTGCACGCGACATGCAGGTTCGAGGGTTACCTACATTATTCTTCATCAGTCCTGACCCAAGCAAAGATGCAATCAGGACAGAAGGGCTAATTCCGTTACAGATGATGCACGATATCATTGACAACGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008219 GO:0009295 GO:0009507 GO:0009536 GO:0009579 GO:0009636 GO:0009657 GO:0009987 GO:0010363 GO:0010941 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031347 GO:0031348 GO:0033554 GO:0034051 GO:0034599 GO:0042221 GO:0042592 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045454 GO:0045824 GO:0047134 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0080134 GO:0080135 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

183

Amino Acids

20.67

Weight (kDa)

5.65

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	77 - 167	2.5e-19	Thioredoxin
Thioredoxin_2	PF13098	94 - 175	2.6e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06730
fragaria_vesca	FvH4_7g03410
malus_domestica	MD02G1283300.v1.1 MD05G1114000.v1.1 MD07G1048800.v1.1
prunus_persica	Prupe.2G039200_v2.0.a1
pyrus_communis	pycom02g24140 pycom07g03540
rosa_chinensis	RchiOBHm_Chr1g0325731
rosa_laevigata	RLG00000030110
rosa_multiflora	Rmu_sc0000703.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324440
rosa_rugosa	Rorug01G0054000 Rorug01G0054100
rosa_samantha	Rh1BG057000 Rh1CG070200 Rh1DG074800
rosa_wichuraiana	Rw1G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	283
AccII	CGCG	5 cut(s)	119, 169, 175, 201, 426
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	5 cut(s)	117, 138, 173, 194, 201
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	167
AgeI	ACCGGT	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	2 cut(s)	181, 245
AluI	AGCT	2 cut(s)	181, 245
AlwNI	CAGNNNCTG	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	93
AoxI	GGCC	1 cut(s)	336
AsiGI	ACCGGT	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	320, 337
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	72
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	3 cut(s)	106, 145, 271
BciT130I	CCWGG	1 cut(s)	341
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	117, 202
BlsI	GCNGC	2 cut(s)	118, 203
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	320, 337
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	475, 513
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	2 cut(s)	93, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	382
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	118, 121
Bsh1236I	CGCG	5 cut(s)	119, 169, 175, 201, 426
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	283
BshTI	ACCGGT	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	94, 110, 141
BslI	CCNNNNNNNGG	1 cut(s)	200
BsnI	GGCC	1 cut(s)	338
Bsp13I	TCCGGA	1 cut(s)	93
BspACI	CCGC	5 cut(s)	117, 138, 173, 194, 201
BspANI	GGCC	1 cut(s)	338
BspEI	TCCGGA	1 cut(s)	93
BspFNI	CGCG	5 cut(s)	119, 169, 175, 201, 426
BspLI	GGNNCC	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	357, 424
BstEII	GGTNACC	1 cut(s)	444
BstFNI	CGCG	5 cut(s)	119, 169, 175, 201, 426
BstHHI	GCGC	1 cut(s)	121
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 166
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	433
BstPI	GGTNACC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	339
BstUI	CGCG	5 cut(s)	119, 169, 175, 201, 426
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	357, 424
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	320, 337
CseI	GACGC	2 cut(s)	158, 175
Csp6I	GTAC	1 cut(s)	412
CspAI	ACCGGT	1 cut(s)	109
CviAII	CATG	3 cut(s)	71, 312, 430
CviJI	RGCY	6 cut(s)	5, 116, 181, 245, 338, 505
CviKI_1	RGCY	6 cut(s)	5, 116, 181, 245, 338, 505
CviQI	GTAC	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	532
FaeI	CATG	3 cut(s)	74, 315, 433
FaiI	YATR	5 cut(s)	72, 306, 313, 369, 431
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	70, 311, 429
Fnu4HI	GCNGC	2 cut(s)	117, 202
Fsp4HI	GCNGC	2 cut(s)	117, 202
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	117, 202
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	3 cut(s)	94, 110, 141
HgaI	GACGC	2 cut(s)	158, 175
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	74, 315, 433
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	3 cut(s)	94, 110, 141
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	165, 320
Hpy188I	TCNGA	2 cut(s)	107, 215
Hpy188III	TCNNGA	8 cut(s)	18, 94, 248, 257, 331, 388, 470, 493
Hpy8I	GTNNAC	2 cut(s)	165, 320
HpyAV	CCTTC	3 cut(s)	163, 274, 494
HpyCH4V	TGCA	6 cut(s)	359, 380, 422, 433, 488, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 166
Hsp92II	CATG	3 cut(s)	74, 315, 433
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	79
LweI	GCATC	2 cut(s)	475, 513
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	2 cut(s)	444, 513
MboII	GAAGA	4 cut(s)	72, 230, 244, 451
MluCI	AATT	2 cut(s)	236, 507
MluI	ACGCGT	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	9 cut(s)	44, 73, 77, 90, 139, 142, 201, 207, 434
MroI	TCCGGA	1 cut(s)	93
MspI	CCGG	3 cut(s)	94, 110, 141
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	5 cut(s)	119, 169, 175, 201, 426
MwoI	GCNNNNNNNGC	2 cut(s)	157, 166
NlaIII	CATG	3 cut(s)	74, 315, 433
NlaIV	GGNNCC	1 cut(s)	285
NspI	RCATGY	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	55
PinAI	ACCGGT	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	118, 203
Psp6I	CCWGG	1 cut(s)	339
PspEI	GGTNACC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	320, 337
PstNI	CAGNNNCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SatI	GCNGC	2 cut(s)	117, 202
Sau96I	GGNCC	2 cut(s)	320, 337
ScrFI	CCNGG	1 cut(s)	341
SetI	ASST	7 cut(s)	36, 183, 247, 285, 325, 438, 451
SfaNI	GCATC	2 cut(s)	475, 513
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	236, 507
SsiI	CCGC	5 cut(s)	117, 138, 173, 194, 201
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	339
TaqI	TCGA	1 cut(s)	439
TasI	AATT	2 cut(s)	236, 507
TauI	GCSGC	2 cut(s)	119, 204
TfiI	GAWTC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	451
TspGWI	ACGGA	3 cut(s)	33, 66, 501
VpaK11BI	GGWCC	1 cut(s)	320
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.