Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013119

Physical Location & Seq

Genomic Coordinates Reverse (-)

2962973 .. 2965053

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTCTCTTCCGAACGCAAACACCTCCTCCTATCTACAGCCATGGCTTTAGCTTCAAAACCCACAGCTACTCTCCCGTGGCCTTACCATATCATCTCCCACCGCCTTCCCTCCCTCTTTCTGTCTCCTCCATGAAAACCCACCACCAAAGCTCACTCTTTTCTCCCTCAACAGTGAAAAGAAAGTTGCTTTGCAGCCCCCCTCATGGTAAACATGTCAGAGAAGATTATCTTGTGAAGAAGGTGTCGGCCCAGGAGGTCCAGGAACTGGTAAAAGGAGACAGAAATGTACCCATTATTGTTGATTTCTTTGCAACATGGTGTGGACCCTGTATATTGATGGCTCAAGAACTTGAAATGCTCGCTGTAGAGTATGAGAGCAATGTACGAATTATAAAGGTTGATACGGATGATGAGTACGAATTCGCACGCGACATGCAGGTACGAGGATTGCCGACATTGTTATTTATCAGTCCAGATTCGAGTAAAGATGCCATCCGGACTGAAGGGCTCATCCCGTTGCAGATGATGCGGGATATCATTGAGAACGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008219 GO:0009295 GO:0009507 GO:0009536 GO:0009579 GO:0009636 GO:0009657 GO:0009987 GO:0010363 GO:0010941 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031347 GO:0031348 GO:0033554 GO:0034051 GO:0034599 GO:0042221 GO:0042592 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045454 GO:0045824 GO:0047134 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0080134 GO:0080135 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

186

Amino Acids

21.02

Weight (kDa)

6.15

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06730
fragaria_vesca	FvH4_7g03410
malus_domestica	MD02G1283300.v1.1 MD05G1114000.v1.1 MD07G1048800.v1.1
prunus_persica	Prupe.2G039200_v2.0.a1
pyrus_communis	pycom02g24140 pycom07g03540
rosa_chinensis	RchiOBHm_Chr1g0325731
rosa_laevigata	RLG00000030110
rosa_multiflora	Rmu_sc0000703.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324440
rosa_rugosa	Rorug01G0054000 Rorug01G0054100
rosa_samantha	Rh1BG057000 Rh1CG070200 Rh1DG074800
rosa_wichuraiana	Rw1G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	498
AciI	CCGC	2 cut(s)	104, 532
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	4 cut(s)	291, 387, 419, 444
AfiI	CCNNNNNNNGG	2 cut(s)	206, 268
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	58, 356
AjnI	CCWGG	2 cut(s)	252, 261
AluBI	AGCT	3 cut(s)	54, 69, 153
AluI	AGCT	3 cut(s)	54, 69, 153
Alw26I	GTCTC	2 cut(s)	130, 273
AlwNI	CAGNNNCTG	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	498
AoxI	GGCC	2 cut(s)	81, 249
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	250, 259, 326
AvaII	GGWCC	2 cut(s)	259, 326
BanII	GRGCYC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	334, 503
BciT130I	CCWGG	2 cut(s)	254, 263
BcoDI	GTCTC	2 cut(s)	130, 273
BfmI	CTRYAG	2 cut(s)	37, 366
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	254, 263
Bme18I	GGWCC	2 cut(s)	259, 326
BmgT120I	GGNCC	3 cut(s)	250, 259, 326
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	254, 263
BmsI	GCATC	2 cut(s)	481, 519
BpuEI	CTTGAG	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	43, 78, 252
BsaWI	WCCGGW	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 268
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	388
BseAI	TCCGGA	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	254, 263
BseDI	CCNNGG	3 cut(s)	43, 78, 252
BseGI	GGATG	3 cut(s)	415, 495, 513
BseLI	CCNNNNNNNGG	2 cut(s)	206, 268
BseMI	GCAATG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	18, 118
BseXI	GCAGC	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	83, 251
BsiSI	CCGG	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	206, 268
BsmAI	GTCTC	2 cut(s)	130, 273
BsnI	GGCC	2 cut(s)	83, 251
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp13I	TCCGGA	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	104, 532
BspANI	GGCC	2 cut(s)	83, 251
BspEI	TCCGGA	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	43, 78, 252
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	254, 263
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	363, 430
BstDSI	CCRYGG	2 cut(s)	43, 78
BstF5I	GGATG	3 cut(s)	415, 495, 513
BstFNI	CGCG	1 cut(s)	432
BstMAI	GTCTC	2 cut(s)	130, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstNI	CCWGG	2 cut(s)	254, 263
BstNSI	RCATGY	2 cut(s)	218, 439
BstSCI	CCNGG	2 cut(s)	252, 261
BstSFI	CTRYAG	2 cut(s)	37, 366
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	83, 251
BtgI	CCRYGG	2 cut(s)	43, 78
BtsCI	GGATG	3 cut(s)	415, 495, 513
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	363, 430
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	250, 259, 326
Csp6I	GTAC	4 cut(s)	290, 386, 418, 443
CviAII	CATG	6 cut(s)	44, 133, 206, 215, 318, 436
CviQI	GTAC	4 cut(s)	290, 386, 418, 443
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	259, 326
Eco57I	CTGAAG	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	252, 261
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	6 cut(s)	47, 136, 209, 218, 321, 439
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	6 cut(s)	43, 132, 205, 214, 317, 435
FauI	CCCGC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	3 cut(s)	422, 482, 500
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	83, 251
HapII	CCGG	1 cut(s)	499
Hin1II	CATG	6 cut(s)	47, 136, 209, 218, 321, 439
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	212, 326
Hpy188I	TCNGA	2 cut(s)	14, 221
Hpy188III	TCNNGA	3 cut(s)	347, 476, 499
Hpy8I	GTNNAC	2 cut(s)	212, 326
HpyAV	CCTTC	3 cut(s)	117, 235, 500
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	195, 314, 439, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
Hsp92II	CATG	6 cut(s)	47, 136, 209, 218, 321, 439
Kpn2I	TCCGGA	1 cut(s)	498
LpnPI	CCDG	9 cut(s)	239, 248, 254, 266, 275, 343, 425, 489, 512
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	2 cut(s)	481, 519
MboII	GAAGA	2 cut(s)	236, 250
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	2 cut(s)	390, 422
MnlI	CCTC	9 cut(s)	36, 39, 122, 126, 139, 178, 213, 250, 440
MroI	TCCGGA	1 cut(s)	498
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	2 cut(s)	254, 263
MvaI	CCWGG	2 cut(s)	254, 263
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	529
NcoI	CCATGG	1 cut(s)	43
NlaIII	CATG	6 cut(s)	47, 136, 209, 218, 321, 439
NlaIV	GGNNCC	1 cut(s)	328
NspI	RCATGY	2 cut(s)	218, 439
PciI	ACATGT	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	197
PscI	ACATGT	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	252, 261
PspGI	CCWGG	2 cut(s)	252, 261
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	3 cut(s)	250, 259, 326
PstNI	CAGNNNCTG	1 cut(s)	268
RsaI	GTAC	4 cut(s)	291, 387, 419, 444
RsaNI	GTAC	4 cut(s)	290, 386, 418, 443
SatI	GCNGC	1 cut(s)	196
Sau96I	GGNCC	3 cut(s)	250, 259, 326
ScrFI	CCNGG	2 cut(s)	254, 263
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	8 cut(s)	28, 56, 71, 155, 246, 261, 402, 444
SfaNI	GCATC	2 cut(s)	481, 519
SfcI	CTRYAG	2 cut(s)	37, 366
SinI	GGWCC	2 cut(s)	259, 326
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	390, 422
SsiI	CCGC	2 cut(s)	104, 532
StyD4I	CCNGG	2 cut(s)	252, 261
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	482
TasI	AATT	2 cut(s)	390, 422
TfiI	GAWTC	1 cut(s)	479
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	259, 326
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	2 cut(s)	218, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.