Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013119

Physical Location & Seq

Genomic Coordinates Forward (+)

11610497 .. 11613172

Gene Structure 2676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTCTCCTCCAGGCACAGACATCCCCCCATATCCATACCTATAGCTTTAGCTTCAAAACCCATAGCCATTTTCCGGTGCTCTTATCATTCCAACCCCCACCACCTGTTTCTCTCACCTCCGTGAAAACCCATCACCAAAACTCACTCTTTTCTAAGAACACGCCGTCTTCACTCTCAACAACGCCAAGAAAGGCGCTTTGCAGACCCCCTCATGGCAAACATGTCAGAGAAGACTATCTTGTGGAAAAGATGTCAGCTCAGGAGGTTCAAGAACTGGTAAAAGGAGACAGAAAGGTACCCCTTGTTGTTGATTTCTTTGCAACATGGTGTGGACCCTGTATATTGATGGCTCAAGAACTTGAAATGCTTGCTGTGGAGTATGAGAGCAACGTAAAAGTTATTAAGGTTGATACGGATGATGAGTATGAATTTGCACGTGACATGCAGGTACGAGGATTGCCGACATTGCTCTTTATAAGTCCAGACCCAAGTAAAGATGCCATCCGGACTGAAGGGCTCATTCCATTACAGATGATGAGGGATATCATTGACAGCGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008219 GO:0009295 GO:0009507 GO:0009536 GO:0009579 GO:0009636 GO:0009657 GO:0009987 GO:0010363 GO:0010941 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031347 GO:0031348 GO:0033554 GO:0034051 GO:0034599 GO:0042221 GO:0042592 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045454 GO:0045824 GO:0047134 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0080134 GO:0080135 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

188

Amino Acids

21.3

Weight (kDa)

6.05

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	84 - 173	3e-19	Thioredoxin
Thioredoxin_2	PF13098	99 - 182	2.1e-09	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06730
fragaria_vesca	FvH4_7g03410
malus_domestica	MD02G1283300.v1.1 MD05G1114000.v1.1 MD07G1048800.v1.1
prunus_persica	Prupe.2G039200_v2.0.a1
pyrus_communis	pycom02g24140 pycom07g03540
rosa_chinensis	RchiOBHm_Chr1g0325731
rosa_laevigata	RLG00000030110
rosa_multiflora	Rmu_sc0000703.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324440
rosa_rugosa	Rorug01G0054000 Rorug01G0054100
rosa_samantha	Rh1BG057000 Rh1CG070200 Rh1DG074800
rosa_wichuraiana	Rw1G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	439
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	534
AcvI	CACGTG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	300, 453
AfiI	CCNNNNNNNGG	2 cut(s)	76, 215
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	58, 272, 365
AjnI	CCWGG	1 cut(s)	12
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	48, 54, 260
AluI	AGCT	3 cut(s)	48, 54, 260
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	431
Asp718I	GGTACC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	109, 128
AvaII	GGWCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	522
BbrPI	CACGTG	1 cut(s)	440
BbsI	GAAGAC	2 cut(s)	162, 240
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	3 cut(s)	141, 343, 512
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	300, 337
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	2 cut(s)	162, 240
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	440
BsaWI	WCCGGW	2 cut(s)	76, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 215
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	467
BseAI	TCCGGA	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	23, 424, 504
BseLI	CCNNNNNNNGG	2 cut(s)	76, 215
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	77, 508
BslI	CCNNNNNNNGG	2 cut(s)	76, 215
BsmAI	GTCTC	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	84, 522
Bsp13I	TCCGGA	1 cut(s)	507
BspCNI	CTCAG	1 cut(s)	274
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	300, 337
BspMI	ACCTGC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	156, 261
BstF5I	GGATG	3 cut(s)	23, 424, 504
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	227, 448
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	162, 240
BtsCI	GGATG	3 cut(s)	23, 424, 504
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	299, 452
CviAII	CATG	4 cut(s)	215, 224, 327, 445
CviJI	RGCY	7 cut(s)	5, 48, 54, 69, 260, 353, 520
CviKI_1	RGCY	7 cut(s)	5, 48, 54, 69, 260, 353, 520
CviQI	GTAC	2 cut(s)	299, 452
DdeI	CTNAG	2 cut(s)	156, 261
Eco24I	GRGCYC	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	522
FaeI	CATG	4 cut(s)	218, 227, 330, 448
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	4 cut(s)	214, 223, 326, 444
FokI	GGATG	3 cut(s)	10, 431, 491
FriOI	GRGCYC	1 cut(s)	522
GlaI	GCGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	200
HapII	CCGG	2 cut(s)	77, 508
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	4 cut(s)	218, 227, 330, 448
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	77, 508
HphI	GGTGA	2 cut(s)	109, 128
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	5 cut(s)	263, 272, 356, 485, 508
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	509
HpyCH4IV	ACGT	2 cut(s)	393, 439
HpyCH4V	TGCA	4 cut(s)	204, 323, 437, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	2 cut(s)	156, 261
HpySE526I	ACGT	2 cut(s)	393, 439
Hsp92II	CATG	4 cut(s)	218, 227, 330, 448
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	507
KpnI	GGTACC	1 cut(s)	302
LpnPI	CCDG	9 cut(s)	26, 90, 120, 248, 263, 352, 434, 498, 521
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	2 cut(s)	393, 439
MaeIII	GTNAC	1 cut(s)	440
MboII	GAAGA	2 cut(s)	162, 245
MhlI	GDGCHC	2 cut(s)	84, 522
MluCI	AATT	2 cut(s)	431, 560
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	20, 130, 222, 259, 449, 534
MroI	TCCGGA	1 cut(s)	507
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	2 cut(s)	77, 508
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	469
NlaIII	CATG	4 cut(s)	218, 227, 330, 448
NlaIV	GGNNCC	2 cut(s)	300, 337
NmuCI	GTSAC	1 cut(s)	440
NspI	RCATGY	2 cut(s)	227, 448
OliI	CACNNNNGTG	1 cut(s)	122
PciI	ACATGT	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
Ppu21I	YACGTR	1 cut(s)	440
PscI	ACATGT	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	300, 337
PspPI	GGNCC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	300, 453
RsaNI	GTAC	2 cut(s)	299, 452
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	405
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	84, 522
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	431, 560
StyD4I	CCNGG	1 cut(s)	12
TaiI	ACGT	2 cut(s)	396, 442
TasI	AATT	2 cut(s)	431, 560
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	2 cut(s)	112, 431
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	2 cut(s)	227, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.