Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013119

Physical Location & Seq

Genomic Coordinates Forward (+)

13767204 .. 13770047

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG074800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTCTCCTCCAGGCACATGGGGGGATGTCTATCCATACCTATAGCTTTAGCTTCAAAACCCATAGCCACTCTCCGGTGCTCTTATCATTCCAACCCCCACCACCTGTTTCTCTCATCTCCGTGAAAACCCATCACCAAAACTCACTCTTTTCTAAGAACACGCCGTCTTCACTCTCAACAACGCCAAGAAAGGTGCTTTGCAGACCCCCTCATGGCAAACATGTCAGAGAAGACTATCTTGTGGAAAAGATGTCAGCTCAGGAGGTTCAAGAGCTGGTAAAAGGAGACAGAAAGCTTGCTGTGGAGTATGAGAGCAACGTAAAAGTTATTAAGGTTGATACGGATGATGAGTATGAATTTGCACGTGACATGCAGGTACGAGGATTGCCGACATTGCTCTTTATAAGTCCAGACCCAAGTAAAGATGCCATCCGGACTGAAGGGCTCATTCCATTACAGATGATGAGGGATATCATTGACAACGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008219 GO:0009295 GO:0009507 GO:0009536 GO:0009579 GO:0009636 GO:0009657 GO:0009987 GO:0010363 GO:0010941 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031347 GO:0031348 GO:0033554 GO:0034051 GO:0034599 GO:0042221 GO:0042592 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045454 GO:0045824 GO:0047134 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0080134 GO:0080135 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

164

Amino Acids

18.54

Weight (kDa)

6.7

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	99 - 149	2e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06730
fragaria_vesca	FvH4_7g03410
malus_domestica	MD02G1283300.v1.1 MD05G1114000.v1.1 MD07G1048800.v1.1
prunus_persica	Prupe.2G039200_v2.0.a1
pyrus_communis	pycom02g24140 pycom07g03540
rosa_chinensis	RchiOBHm_Chr1g0325731
rosa_laevigata	RLG00000030110
rosa_multiflora	Rmu_sc0000703.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324440
rosa_rugosa	Rorug01G0054000 Rorug01G0054100
rosa_samantha	Rh1BG057000 Rh1CG070200 Rh1DG074800
rosa_wichuraiana	Rw1G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	367
AccIII	TCCGGA	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	462
AcvI	CACGTG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	76, 215
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	58, 272
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	5 cut(s)	48, 54, 260, 277, 298
AluI	AGCT	5 cut(s)	48, 54, 260, 277, 298
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	435
ApoI	RAATTY	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	450
BbrPI	CACGTG	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	162, 240
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	2 cut(s)	141, 440
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	2 cut(s)	162, 240
Bpu10I	CCTNAGC	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	32
BsaWI	WCCGGW	2 cut(s)	76, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 215
Bse3DI	GCAATG	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	33, 352, 432
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	76, 215
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	77, 436
BslI	CCNNNNNNNGG	2 cut(s)	76, 215
BsmAI	GTCTC	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	84, 450
Bsp13I	TCCGGA	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	274
BspEI	TCCGGA	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	156, 261
BstF5I	GGATG	3 cut(s)	33, 352, 432
BstMAI	GTCTC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	227, 376
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	162, 240
BstXI	CCANNNNNNTGG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	33, 352, 432
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	4 cut(s)	20, 215, 224, 373
CviJI	RGCY	8 cut(s)	5, 48, 54, 69, 260, 277, 298, 448
CviKI_1	RGCY	8 cut(s)	5, 48, 54, 69, 260, 277, 298, 448
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	2 cut(s)	156, 261
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	462
Eco72I	CACGTG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	4 cut(s)	23, 218, 227, 376
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	4 cut(s)	19, 214, 223, 372
FokI	GGATG	3 cut(s)	40, 359, 419
FriOI	GRGCYC	1 cut(s)	450
HapII	CCGG	2 cut(s)	77, 436
Hin1II	CATG	4 cut(s)	23, 218, 227, 376
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	2 cut(s)	77, 436
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	4 cut(s)	263, 272, 413, 436
HpyAV	CCTTC	1 cut(s)	437
HpyCH4IV	ACGT	2 cut(s)	321, 367
HpyCH4V	TGCA	3 cut(s)	204, 365, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	2 cut(s)	156, 261
HpySE526I	ACGT	2 cut(s)	321, 367
Hsp92II	CATG	4 cut(s)	23, 218, 227, 376
Kpn2I	TCCGGA	1 cut(s)	435
LpnPI	CCDG	8 cut(s)	26, 90, 120, 248, 263, 362, 426, 449
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	2 cut(s)	321, 367
MaeIII	GTNAC	1 cut(s)	368
MboII	GAAGA	2 cut(s)	162, 245
MhlI	GDGCHC	2 cut(s)	84, 450
MluCI	AATT	2 cut(s)	359, 488
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	5 cut(s)	20, 222, 259, 377, 462
MroI	TCCGGA	1 cut(s)	435
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	2 cut(s)	77, 436
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	397
NlaIII	CATG	4 cut(s)	23, 218, 227, 376
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	2 cut(s)	227, 376
PciI	ACATGT	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	368
PmlI	CACGTG	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	368
PscI	ACATGT	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	84, 450
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	359, 488
StyD4I	CCNGG	1 cut(s)	12
TaiI	ACGT	2 cut(s)	324, 370
TasI	AATT	2 cut(s)	359, 488
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	2 cut(s)	112, 359
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	2 cut(s)	227, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.