Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013119

Physical Location & Seq

Genomic Coordinates Reverse (-)

22276454 .. 22279456

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTCTCTTCCAAACACAAACAACACCTCCTATCCACGGCCATGGCGTTAGCTTCAAAACCCACAGCCACTCTCCCATGGCCATACCATTTCATCCCCCACCGCCTTCCCTCTCTCTTTCTCTCTCCTCCATTAGAACCCACCAACAAGACTCACTTTTTTCTCCCTTAACAGTGAAAAGAAAGTTGCTTTGCAGACCCCCTCGTGGTAAACATGTTAGAGAAGATTATCTTGTGAAGAAGGTGTCGGCGGAGGAGGTTCAGGAACTGGTAAAAGGAGACAGAAATGTACCCATTATTGTTGATTTTTTTGCAACATGGTGTGGACCCTGTATATTGATGGCTCAAGAACTTGAAATGCTTGCTGTGGAGTACGAGAGCAATGTAAGAATTGTAAAGGTTGACACGGATGATGAGTACGAATTTGCACGGGACATGCAGGTACGAGGATTGCCGACATTGTTATTTATTAGTCCAGATTCAAGCAAAGATGCCATACGTACTGAAGGGCTCATCCCATTACAGATGATGCGGGATATCATTGATAACGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008219 GO:0009295 GO:0009507 GO:0009536 GO:0009579 GO:0009636 GO:0009657 GO:0009987 GO:0010363 GO:0010941 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031347 GO:0031348 GO:0033554 GO:0034051 GO:0034599 GO:0042221 GO:0042592 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045454 GO:0045824 GO:0047134 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0080134 GO:0080135 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

186

Amino Acids

20.98

Weight (kDa)

5.96

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	80 - 173	7.5e-20	Thioredoxin
Thioredoxin_2	PF13098	96 - 179	2.6e-09	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06730
fragaria_vesca	FvH4_7g03410
malus_domestica	MD02G1283300.v1.1 MD05G1114000.v1.1 MD07G1048800.v1.1
prunus_persica	Prupe.2G039200_v2.0.a1
pyrus_communis	pycom02g24140 pycom07g03540
rosa_chinensis	RchiOBHm_Chr1g0325731
rosa_laevigata	RLG00000030110
rosa_multiflora	Rmu_sc0000703.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324440
rosa_rugosa	Rorug01G0054000 Rorug01G0054100
rosa_samantha	Rh1BG057000 Rh1CG070200 Rh1DG074800
rosa_wichuraiana	Rw1G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AciI	CCGC	3 cut(s)	104, 251, 532
AcoI	YGGCCR	2 cut(s)	40, 81
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	5 cut(s)	291, 374, 419, 444, 502
AfiI	CCNNNNNNNGG	2 cut(s)	38, 206
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	58, 356, 483
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	2 cut(s)	40, 81
ApoI	RAATTY	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	513
BauI	CACGAG	1 cut(s)	204
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	328
BmsI	GCATC	2 cut(s)	481, 519
BpuEI	CTTGAG	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	37, 43, 78
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 206
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	388
BseDI	CCNNGG	3 cut(s)	37, 43, 78
BseGI	GGATG	3 cut(s)	94, 415, 513
BseLI	CCNNNNNNNGG	2 cut(s)	38, 206
BseMI	GCAATG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	118, 269
BshFI	GGCC	2 cut(s)	42, 83
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	38, 206
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	42, 83
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp19I	CCATGG	2 cut(s)	43, 78
BspACI	CCGC	3 cut(s)	104, 251, 532
BspANI	GGCC	2 cut(s)	42, 83
BspLI	GGNNCC	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	37, 43, 78
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	43, 78
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	363
BstDSI	CCRYGG	3 cut(s)	37, 43, 78
BstF5I	GGATG	3 cut(s)	94, 415, 513
BstMAI	GTCTC	1 cut(s)	273
BstNSI	RCATGY	2 cut(s)	218, 439
BstSNI	TACGTA	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	42, 83
BtgI	CCRYGG	3 cut(s)	37, 43, 78
BtsCI	GGATG	3 cut(s)	94, 415, 513
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	326
Csp6I	GTAC	5 cut(s)	290, 373, 418, 443, 501
CviAII	CATG	5 cut(s)	44, 79, 215, 318, 436
CviJI	RGCY	7 cut(s)	5, 42, 54, 69, 83, 344, 511
CviKI_1	RGCY	7 cut(s)	5, 42, 54, 69, 83, 344, 511
CviQI	GTAC	5 cut(s)	290, 373, 418, 443, 501
EaeI	YGGCCR	2 cut(s)	40, 81
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	266
Eco105I	TACGTA	1 cut(s)	500
Eco130I	CCWWGG	2 cut(s)	43, 78
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	525
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	43, 78
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	2 cut(s)	43, 78
FaeI	CATG	5 cut(s)	47, 82, 218, 321, 439
FaiI	YATR	8 cut(s)	45, 80, 86, 216, 319, 335, 437, 497
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 216, 248
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	5 cut(s)	43, 78, 214, 317, 435
FauI	CCCGC	1 cut(s)	525
FokI	GGATG	3 cut(s)	81, 422, 500
FriOI	GRGCYC	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	42, 83
Hin1II	CATG	5 cut(s)	47, 82, 218, 321, 439
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	152, 479
Hpy166II	GTNNAC	3 cut(s)	212, 326, 403
Hpy188III	TCNNGA	3 cut(s)	263, 347, 476
Hpy8I	GTNNAC	3 cut(s)	212, 326, 403
HpyAV	CCTTC	3 cut(s)	117, 235, 500
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	195, 314, 428, 439
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	5 cut(s)	47, 82, 218, 321, 439
LpnPI	CCDG	5 cut(s)	248, 254, 343, 425, 489
LweI	GCATC	2 cut(s)	481, 519
MaeII	ACGT	1 cut(s)	499
MboII	GAAGA	2 cut(s)	236, 250
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	390, 422
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	39, 122, 139, 213, 247, 250, 440
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	83
NcoI	CCATGG	2 cut(s)	43, 78
NlaIII	CATG	5 cut(s)	47, 82, 218, 321, 439
NlaIV	GGNNCC	1 cut(s)	328
NspI	RCATGY	2 cut(s)	218, 439
PciI	ACATGT	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	479
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	500
PscI	ACATGT	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	268
RsaI	GTAC	5 cut(s)	291, 374, 419, 444, 502
RsaNI	GTAC	5 cut(s)	290, 373, 418, 443, 501
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	170
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	7 cut(s)	31, 56, 246, 261, 402, 444, 502
SfaNI	GCATC	2 cut(s)	481, 519
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
SnaBI	TACGTA	1 cut(s)	500
Sse9I	AATT	2 cut(s)	390, 422
SsiI	CCGC	3 cut(s)	104, 251, 532
StyI	CCWWGG	2 cut(s)	43, 78
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	502
TasI	AATT	2 cut(s)	390, 422
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	2 cut(s)	218, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.