Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013119

Physical Location & Seq

Genomic Coordinates Forward (+)

4211827 .. 4215963

Gene Structure 4137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTCTCTTCCAAACCCAAACAGCTCCTCCTATCCATAGCTATGGCTTTAGCTCGAAAACCCATAGTCATTCTCCCATGGTCTTATCATTTCATTTTCCTCCACCTTCTCGCCTTGTTACTCACTTCTCCGTGAAAACCCATCAGCAAAATTCACTATTTTCTATCCAGAACACACCGCTTTCACTCTCAACAGTTACAAGGAAGTTGCTTTGCAGACCCCCTCAAGGGAAACATGTCAGAGAAGACTATCTTGTGAAGAAGGTGTCGGCCCAGGAGGTTCAGGAACTGGTAAAAGGAGAAAGAAATGTACCCCTTGTCGTTGATTTCTTTGCAACATGGTGTGGACCTTGTATATTGATGGCTCAAGAACTTGAAATGCTTGCTGTGGAGTATGAGAGCAATGTTAAAATTATTAAGGTTGATACAGATGATGAGTACGAGTTTGCACGTGACATGCAGGTTCGAGGATTGCCGACATTGCTCTTTGTCAGTCCAGATCCAAGTAAAGATGCCATCCGGACTGAAGGGCTCATCCCATTACAGATGATGCGGGATATCATTGATAACGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008219 GO:0009295 GO:0009507 GO:0009536 GO:0009579 GO:0009636 GO:0009657 GO:0009987 GO:0010363 GO:0010941 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031347 GO:0031348 GO:0033554 GO:0034051 GO:0034599 GO:0042221 GO:0042592 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045454 GO:0045824 GO:0047134 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0080134 GO:0080135 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

193

Amino Acids

21.84

Weight (kDa)

6.15

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06730
fragaria_vesca	FvH4_7g03410
malus_domestica	MD02G1283300.v1.1 MD05G1114000.v1.1 MD07G1048800.v1.1
prunus_persica	Prupe.2G039200_v2.0.a1
pyrus_communis	pycom02g24140 pycom07g03540
rosa_chinensis	RchiOBHm_Chr1g0325731
rosa_laevigata	RLG00000030110
rosa_multiflora	Rmu_sc0000703.1_g000005
rosa_roxburghii	Rroxscaffold_4G00324440
rosa_rugosa	Rorug01G0054000 Rorug01G0054100
rosa_samantha	Rh1BG057000 Rh1CG070200 Rh1DG074800
rosa_wichuraiana	Rw1G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	519
AciI	CCGC	2 cut(s)	179, 553
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	546
AcvI	CACGTG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	312, 440
AfiI	CCNNNNNNNGG	2 cut(s)	227, 228
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	3 cut(s)	26, 42, 54
AluI	AGCT	3 cut(s)	26, 42, 54
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	519
AoxI	GGCC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	271, 347
AvaII	GGWCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	534
BbrPI	CACGTG	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	252
BccI	CCATC	3 cut(s)	150, 355, 524
BciT130I	CCWGG	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	271, 347
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	502, 540
BpiI	GAAGAC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	210, 351
BsaAI	YACGTR	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	78, 273
BsaWI	WCCGGW	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 228
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	409, 479
BseAI	TCCGGA	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	78, 273
BseGI	GGATG	2 cut(s)	516, 534
BseLI	CCNNNNNNNGG	2 cut(s)	227, 228
BseMI	GCAATG	2 cut(s)	409, 479
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	227, 228
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	519
Bsp143I	GATC	1 cut(s)	499
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	2 cut(s)	179, 553
BspANI	GGCC	1 cut(s)	272
BspEI	TCCGGA	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	494
BsrDI	GCAATG	2 cut(s)	409, 479
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	78, 273
BssMI	GATC	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	516, 534
BstKTI	GATC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	2 cut(s)	239, 460
BstSCI	CCNGG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	499
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	516, 534
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	271, 347
Csp6I	GTAC	2 cut(s)	311, 439
CviAII	CATG	4 cut(s)	79, 236, 339, 457
CviJI	RGCY	8 cut(s)	5, 26, 42, 48, 54, 272, 365, 532
CviKI_1	RGCY	8 cut(s)	5, 26, 42, 48, 54, 272, 365, 532
CviQI	GTAC	2 cut(s)	311, 439
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	546
Eco72I	CACGTG	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	4 cut(s)	82, 239, 342, 460
FaiI	YATR	9 cut(s)	39, 45, 66, 80, 237, 340, 356, 396, 458
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	4 cut(s)	78, 235, 338, 456
FauI	CCCGC	1 cut(s)	546
FokI	GGATG	2 cut(s)	503, 521
FriOI	GRGCYC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	520
Hin1II	CATG	4 cut(s)	82, 239, 342, 460
HpaII	CCGG	1 cut(s)	520
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	5 cut(s)	169, 284, 368, 497, 520
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	117, 256, 521
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	4 cut(s)	216, 335, 449, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	4 cut(s)	82, 239, 342, 460
Kpn2I	TCCGGA	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	8 cut(s)	182, 260, 269, 275, 287, 446, 510, 533
LweI	GCATC	2 cut(s)	502, 540
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	3 cut(s)	118, 196, 452
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	2 cut(s)	257, 271
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	2 cut(s)	151, 411
MnlI	CCTC	5 cut(s)	39, 111, 234, 271, 461
MroI	TCCGGA	1 cut(s)	519
MseI	TTAA	2 cut(s)	408, 417
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	481
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	4 cut(s)	82, 239, 342, 460
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	2 cut(s)	239, 460
PciI	ACATGT	1 cut(s)	235
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
Ppu21I	YACGTR	1 cut(s)	452
PscI	ACATGT	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	273
PspCI	CACGTG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	271, 347
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	2 cut(s)	312, 440
RsaNI	GTAC	2 cut(s)	311, 439
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	408, 417
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	2 cut(s)	271, 347
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	502, 540
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	225, 366
SmoI	CTYRAG	2 cut(s)	225, 366
Sse9I	AATT	2 cut(s)	151, 411
SsiI	CCGC	2 cut(s)	179, 553
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	56, 466
TasI	AATT	2 cut(s)	151, 411
Tru1I	TTAA	2 cut(s)	408, 417
Tru9I	TTAA	2 cut(s)	408, 417
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	2 cut(s)	239, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.