AT3G07270

GTP cyclohydrolase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2313998 .. 2317364
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07270.1

Sequence Viewer

Length: 1401 bp
ATGGGCGCATTAGATGAGGGATGTTTGAATCTGGAGCTCGACATTGGAATGAAAAATGGCTGCATTGAGCTTGCTTTCGAGCACCAACCTGAGACTTTAGCAATCCAAGACGCTGTCAAACTTCTCTTGCAAGGTCTTCATGAAGATGTCAATCGGGAAGGCATCAAAAAGACTCCTTTCCGTGTCGCCAAGGCCCTTCGTGAAGGGACCAGAGGTTATAAGCAAAAGGTGAAGGACTATGTACAGAGTGCTCTGTTTCCAGAAGCAGGGTTGGATGAAGGAGTTGGGCAAGCAGGAGGAGTCGGAGGACTTGTTGTTGTCAGAGACCTCGATCATTACTCTTACTGTGAATCTTGCTTGCTTCCTTTTCATGTCAAGTGTCACATAGGTTATGTCCCATCGGGCCAGAGAGTGTTAGGACTGAGCAAGTTCTCTAGAGTCACTGATGTTTTCGCCAAGCGGCTCCAAGACCCTCAGCGTTTGGCTGATGATATTTGTTCAGCTCTCCAACATTGGGTCAAACCAGCTGGAGTCGCTGTTGTTCTTGAATGCTCTCACATTCACTTCCCCAGTTTGGACTTGGACTCTCTGAACTTGTCTAGCCACCGTGGATTTGTGAAGCTACTGGTTTCCTCGGGGTCAGGAGTTTTCGAGGATGAAAGCTCGAATCTTTGGGGTGAATTTCAGAGTTTCTTGATGTTCAAAGGTGTAAAAACGCAAGCTTTGTGCAGAAATGGCAGCTCTGTGAAAGAGTGGTGCCCAAGCGTTAAAAGCTCGTCTAAATTATCACCTGAAGTTGACCCGGAAATGGTTTCTGCTGTTGTTTCCATCCTGAAATCACTGGGAGAAGATCCGTTGAGGAAAGAACTCATTGCTACACCAACTCGATTCCTCAAATGGATGTTGAACTTCCAAAGAACCAACCTCGAAATGAAGCTAAACAGCTTTAACCCTGCCAAAGTCAATGGCGAGGTCAAAGAGAAAAGGCTGCACTGTGAGCTGAACATGCCCTTCTGGTCAATGTGTGAACATCATTTGCTTCCTTTCTATGGAGTTGTTCATATTGGCTACTTTTGTGCTGAAGGATCCAACCCCAACCCTGTTGGAAGTTCACTCATGAAAGCGATTGTACACTTTTATGGGTTCAAGCTTCAAGTGCAAGAGAGGATGACTCGACAGATCGCTGAAACGCTATCGCCTCTTGTTGGCGGGGATGTGATTGTTGTGGCGGAAGCTGGGCATACTTGTATGATCTCTAGAGGAATTGAGAAGTTTGGAAGCAGCACCGCGACAATCGCAGTTTTGGGTCGGTTTTCGAGTGACAATTCCGCAAGAGCGATGTTTCTAGACAAGATCCATACAACTAATGCCTTGAAGACAGAGTCAAGCTCTCCATTTTGA

Protein Analysis

466

Amino Acids

51.38

Weight (kDa)

6.96

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_cyclohydroI PF01227 35 - 187 5.8e-34 GTP cyclohydrolase I
GTP_cyclohydroI PF01227 272 - 452 2.5e-38 GTP cyclohydrolase I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011449)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 756
AccII CGCG 1 cut(s) 1289
AciI CCGC 5 cut(s) 460, 1209, 1229, 1287, 1329
AclWI GGATC 4 cut(s) 845, 1080, 1093, 1348
AcsI RAATTY 1 cut(s) 680
AcuI CTGAAG 2 cut(s) 813, 1101
AfaI GTAC 2 cut(s) 243, 1131
AfiI CCNNNNNNNGG 6 cut(s) 266, 514, 574, 808, 1049, 1205
AgsI TTSAA 7 cut(s) 28, 548, 703, 907, 1147, 1154, 1375
Alw21I GWGCWC 3 cut(s) 39, 84, 253
Alw26I GTCTC 2 cut(s) 86, 318
AlwI GGATC 4 cut(s) 845, 1080, 1093, 1348
Ama87I CYCGRG 1 cut(s) 634
AoxI GGCC 2 cut(s) 192, 403
ApeKI GCWGC 4 cut(s) 60, 738, 988, 1281
ApoI RAATTY 1 cut(s) 680
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 193, 207, 403
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 3 cut(s) 241, 689, 780
AvaI CYCGRG 1 cut(s) 634
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 761
BamHI GGATCC 1 cut(s) 1085
BanI GGYRCC 1 cut(s) 756
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 128, 1382
Bbv12I GWGCWC 3 cut(s) 39, 84, 253
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 4 cut(s) 47, 750, 975, 1293
BccI CCATC 2 cut(s) 406, 836
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 2 cut(s) 86, 318
BfaI CTAG 4 cut(s) 435, 600, 1257, 1346
BisI GCNGC 5 cut(s) 61, 461, 739, 989, 1282
BlsI GCNGC 5 cut(s) 62, 462, 740, 990, 1283
Bme1390I CCNGG 1 cut(s) 803
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 193, 207, 403
BmiI GGNNCC 4 cut(s) 208, 464, 758, 1087
BmrFI CCNGG 1 cut(s) 803
BmrI ACTGGG 2 cut(s) 564, 851
BmsI GCATC 1 cut(s) 171
BmuI ACTGGG 2 cut(s) 564, 851
BpiI GAAGAC 2 cut(s) 128, 1382
BplI GAGNNNNNCTC 3 cut(s) 1156, 1188, 1373
BpmI CTGGAG 2 cut(s) 53, 549
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 803
BsaBI GATNNNNATC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 189, 607, 633
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 522, 552
Bsc4I CCNNNNNNNGG 6 cut(s) 266, 514, 574, 808, 1049, 1205
Bse1I ACTGG 3 cut(s) 570, 630, 846
Bse3DI GCAATG 1 cut(s) 870
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 189, 607, 633
BseGI GGATG 7 cut(s) 26, 280, 661, 828, 906, 1173, 1219
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 6 cut(s) 266, 514, 574, 808, 1049, 1205
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 81, 413, 488
BseNI ACTGG 3 cut(s) 570, 630, 846
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 4 cut(s) 47, 750, 975, 1293
BseYI CCCAGC 1 cut(s) 1235
BsgI GTGCAG 2 cut(s) 748, 974
Bsh1236I CGCG 1 cut(s) 1289
BshFI GGCC 2 cut(s) 194, 405
BshNI GGYRCC 1 cut(s) 756
BsiHKAI GWGCWC 3 cut(s) 39, 84, 253
BsiHKCI CYCGRG 1 cut(s) 634
BsiSI CCGG 1 cut(s) 803
BslFI GGGAC 2 cut(s) 220, 380
BslI CCNNNNNNNGG 6 cut(s) 266, 514, 574, 808, 1049, 1205
BsmAI GTCTC 2 cut(s) 86, 318
BsmFI GGGAC 2 cut(s) 220, 380
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 2 cut(s) 194, 405
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 634
Bsp1286I GDGCHC 4 cut(s) 39, 84, 253, 761
Bsp1407I TGTACA 2 cut(s) 241, 1129
Bsp143I GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
BspACI CCGC 5 cut(s) 460, 1209, 1229, 1287, 1329
BspANI GGCC 2 cut(s) 194, 405
BspCNI CTCAG 3 cut(s) 82, 414, 487
BspFNI CGCG 1 cut(s) 1289
BspHI TCATGA 2 cut(s) 139, 1116
BspLI GGNNCC 4 cut(s) 208, 464, 758, 1087
BspPI GGATC 4 cut(s) 845, 1080, 1093, 1348
BspT107I GGYRCC 1 cut(s) 756
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 870
BsrGI TGTACA 2 cut(s) 241, 1129
BsrI ACTGG 3 cut(s) 570, 630, 846
BssECI CCNNGG 3 cut(s) 189, 607, 633
BssMI GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 347, 608, 995
BstAUI TGTACA 2 cut(s) 241, 1129
BstC8I GCNNGC 4 cut(s) 72, 291, 359, 720
BstDEI CTNAG 3 cut(s) 90, 422, 474
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 7 cut(s) 26, 280, 661, 828, 906, 1173, 1219
BstFNI CGCG 1 cut(s) 1289
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 6 cut(s) 334, 853, 1088, 1182, 1254, 1356
BstMAI GTCTC 2 cut(s) 86, 318
BstMBI GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
BstMWI GCNNNNNNNGC 7 cut(s) 533, 735, 771, 997, 1006, 1156, 1295
BstNSI RCATGY 1 cut(s) 1009
BstSCI CCNGG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 761
BstUI CGCG 1 cut(s) 1289
BstV1I GCAGC 4 cut(s) 47, 750, 975, 1293
BstV2I GAAGAC 2 cut(s) 128, 1382
BstX2I RGATCY 3 cut(s) 850, 1085, 1353
BstYI RGATCY 3 cut(s) 850, 1085, 1353
BsuRI GGCC 2 cut(s) 194, 405
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 1352
BtsCI GGATG 7 cut(s) 26, 280, 661, 828, 906, 1173, 1219
BtsIMutI CAGTG 3 cut(s) 441, 839, 991
Cac8I GCNNGC 4 cut(s) 72, 291, 359, 720
CciI TCATGA 2 cut(s) 139, 1116
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 193, 207, 403
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 242, 1130
CviAII CATG 4 cut(s) 140, 371, 1006, 1117
CviQI GTAC 2 cut(s) 242, 1130
DdeI CTNAG 3 cut(s) 90, 422, 474
DpnI GATC 6 cut(s) 333, 852, 1087, 1181, 1253, 1355
DpnII GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
EciI GGCGGA 1 cut(s) 1244
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 813, 1101
Eco88I CYCGRG 1 cut(s) 634
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 4 cut(s) 143, 374, 1009, 1120
FaqI GGGAC 2 cut(s) 220, 380
FatI CATG 4 cut(s) 139, 370, 1005, 1116
FauI CCCGC 1 cut(s) 1202
Fnu4HI GCNGC 5 cut(s) 61, 461, 739, 989, 1282
FokI GGATG 7 cut(s) 33, 287, 668, 815, 913, 1180, 1226
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 5 cut(s) 61, 461, 739, 989, 1282
FspBI CTAG 4 cut(s) 435, 600, 1257, 1346
GlaI GCGC 1 cut(s) 7
GluI GCNGC 5 cut(s) 61, 461, 739, 989, 1282
GsaI CCCAGC 1 cut(s) 1239
GsuI CTGGAG 2 cut(s) 53, 549
HaeIII GGCC 2 cut(s) 194, 405
HapII CCGG 1 cut(s) 803
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 8
Hin1II CATG 4 cut(s) 143, 374, 1009, 1120
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 2 cut(s) 720, 1148
HpaII CCGG 1 cut(s) 803
HphI GGTGA 3 cut(s) 241, 689, 780
Hpy166II GTNNAC 4 cut(s) 799, 1028, 1112, 1132
Hpy188I TCNGA 4 cut(s) 305, 323, 591, 687
Hpy8I GTNNAC 4 cut(s) 799, 1028, 1112, 1132
HpyAV CCTTC 7 cut(s) 152, 197, 206, 226, 272, 1021, 1076
HpyCH4III ACNGT 3 cut(s) 347, 608, 995
HpyCH4V TGCA 5 cut(s) 63, 130, 729, 991, 1159
HpyF10VI GCNNNNNNNGC 7 cut(s) 533, 735, 771, 997, 1006, 1156, 1295
HpyF3I CTNAG 3 cut(s) 90, 422, 474
Hsp92II CATG 4 cut(s) 143, 374, 1009, 1120
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
LmnI GCTCC 2 cut(s) 34, 468
Lsp1109I GCAGC 4 cut(s) 47, 750, 975, 1293
LweI GCATC 1 cut(s) 171
MaeI CTAG 4 cut(s) 435, 600, 1257, 1346
MaeIII GTNAC 3 cut(s) 380, 439, 1319
MalI GATC 6 cut(s) 333, 852, 1087, 1181, 1253, 1355
MboI GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
MboII GAAGA 4 cut(s) 128, 155, 860, 1387
MflI RGATCY 3 cut(s) 850, 1085, 1353
MhlI GDGCHC 4 cut(s) 39, 84, 253, 761
MluCI AATT 4 cut(s) 680, 782, 1263, 1324
MlyI GAGTC 7 cut(s) 166, 309, 447, 540, 578, 1165, 1391
MmeI TCCRAC 5 cut(s) 252, 283, 532, 1084, 1113
MseI TTAA 2 cut(s) 768, 948
MslI CAYNNNNRTG 3 cut(s) 47, 144, 1137
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 803
MspR9I CCNGG 1 cut(s) 803
Mva1269I GAATGC 1 cut(s) 554
MvnI CGCG 1 cut(s) 1289
MwoI GCNNNNNNNGC 7 cut(s) 533, 735, 771, 997, 1006, 1156, 1295
NciI CCSGG 1 cut(s) 803
NdeII GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
NlaIII CATG 4 cut(s) 143, 374, 1009, 1120
NlaIV GGNNCC 4 cut(s) 208, 464, 758, 1087
NmuCI GTSAC 3 cut(s) 380, 439, 1319
NspI RCATGY 1 cut(s) 1009
PagI TCATGA 2 cut(s) 139, 1116
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 4 cut(s) 28, 350, 667, 888
PflFI GACNNNGTC 2 cut(s) 113, 1381
PkrI GCNGC 5 cut(s) 62, 462, 740, 990, 1283
PleI GAGTC 7 cut(s) 166, 308, 446, 539, 578, 1165, 1390
PpsI GAGTC 7 cut(s) 166, 308, 446, 539, 578, 1165, 1390
PsiI TTATAA 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 1235
PspN4I GGNNCC 4 cut(s) 208, 464, 758, 1087
PspPI GGNCC 3 cut(s) 193, 207, 403
PsuI RGATCY 3 cut(s) 850, 1085, 1353
PsyI GACNNNGTC 2 cut(s) 113, 1381
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 243, 1131
RsaNI GTAC 2 cut(s) 242, 1130
RseI CAYNNNNRTG 3 cut(s) 47, 144, 1137
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 768, 948
SatI GCNGC 5 cut(s) 61, 461, 739, 989, 1282
Sau3AI GATC 6 cut(s) 331, 850, 1085, 1179, 1251, 1353
Sau96I GGNCC 3 cut(s) 193, 207, 403
SchI GAGTC 7 cut(s) 166, 309, 447, 540, 578, 1165, 1391
ScrFI CCNGG 1 cut(s) 803
SduI GDGCHC 4 cut(s) 39, 84, 253, 761
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 3 cut(s) 47, 144, 1137
Sse9I AATT 4 cut(s) 680, 782, 1263, 1324
SsiI CCGC 5 cut(s) 460, 1209, 1229, 1287, 1329
SspMI CTAG 4 cut(s) 435, 600, 1257, 1346
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 801
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 3 cut(s) 347, 608, 995
TaqI TCGA 9 cut(s) 39, 78, 330, 651, 665, 886, 927, 1174, 1316
TasI AATT 4 cut(s) 680, 782, 1263, 1324
TatI WGTACW 2 cut(s) 241, 1129
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 4 cut(s) 28, 350, 667, 888
Tru1I TTAA 2 cut(s) 768, 948
Tru9I TTAA 2 cut(s) 768, 948
TscAI CASTG 3 cut(s) 448, 846, 998
TseFI GTSAC 3 cut(s) 380, 439, 1319
TseI GCWGC 4 cut(s) 60, 738, 988, 1281
Tsp45I GTSAC 3 cut(s) 380, 439, 1319
TspDTI ATGAA 9 cut(s) 65, 128, 156, 291, 359, 672, 947, 1049, 1133
TspGWI ACGGA 2 cut(s) 170, 843
TspRI CASTG 3 cut(s) 448, 846, 998
Tth111I GACNNNGTC 2 cut(s) 113, 1381
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 1 cut(s) 680
XbaI TCTAGA 3 cut(s) 434, 1256, 1345
XceI RCATGY 1 cut(s) 1009
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XspI CTAG 4 cut(s) 435, 600, 1257, 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.