Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011449

Physical Location & Seq

Genomic Coordinates Reverse (-)

45707165 .. 45710858

Gene Structure 3694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG265600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCTACCATTCCAGGTTAAATGTCATGTGGGTTATGTCCCTTCTGGTCAACGAGTTGTAGGCTTAAGCAAGCTCTCTCGAGTAGCTGATGTGTTTGGAAAACGTCTTCAAGAGCCACAGCGTCTAGCAGATGAAGTGTGCTCAGCCCTGCACCATGGCATCAAGCCAGCCGGTGTCGCTGTCAGGCTCCAGTGTTCACACATTCATTTCCCAAATTTAGAATCAGCTTTTCTCGACTCAAACCACCAAGGATGGGTAAAATTGCTGGTTAGTTCAGGTTCTGGAGTTTTTGAAAATGAAAGTGCCAATATTTGGGCAGATTTTTTGAGTCTTCTGAAATTCAGAGGCATAGATGTGGAGAAAACTGGCTTGAGAGACTCAAGCAATTGGTGTCCATCTCGATCTTCAGCCGGTGCTAATGCTGTCTCGAAGGTTGAATCAGCCAATCAGGGAATGGTCACTGCAGTAGCTTCAATTCTTAGATCACTGGGTGAAGACCCATTGAGAAAGGAGCTCGTAGGAACACCTGCTCGCTTTGTGAAATGGTTGATGAACTTCCAGAATTGTAATTTGGATATGAAGCTGAATGGGTTTGTTTCTGCTAGGGTGGATCCTCTACACCCCAATGGAGATAGCTGCAAAGAAAAGCAAATCCACTCTGAGCTCAACTTGTCTGTGTGGTCTCAGTGTGAGCATCATTTACTTCCCTTTTATGGTGTCGTGCATATAGGATATACGGCCACAGAAGGATCCAATCCCATTGGAAAATCTCTTCTACAATCAATTGTCTGTTTCTATGGTTTTAAGCTCCAGGTGCAGGAGAGACTTACACGGCAGATAGCAGAAACTGTGGCATCACTTTCAGGTGGAGATGTGATAGTTGTTGTGGAGGCTAACCACACCTGTATGATCTCTAGAGGGATTGAGAAGTTTGGAAGTAGCACAGCTACCATTGCAGTACTGGGTCGTTTTTCAACTGACCCTGCTGCAAGGGCCAAGTTTTTGCAGAGCCTCCCAAACACTGCCATTTCGGGACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003933 GO:0003934 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006725 GO:0006729 GO:0006732 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0008277 GO:0009058 GO:0009108 GO:0009966 GO:0009987 GO:0010646 GO:0016020 GO:0016787 GO:0016810 GO:0016814 GO:0017076 GO:0017144 GO:0018130 GO:0019001 GO:0019238 GO:0019438 GO:0019637 GO:0019751 GO:0023051 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034311 GO:0034312 GO:0034641 GO:0035639 GO:0035998 GO:0036094 GO:0042558 GO:0042559 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046146 GO:0046165 GO:0046173 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051066 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

GTP_cyclohydroI

Protein Analysis

346

Amino Acids

37.61

Weight (kDa)

8.7

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_cyclohydroI	PF01227	1 - 68	2e-16	GTP cyclohydrolase I
GTP_cyclohydroI	PF01227	154 - 337	2.2e-38	GTP cyclohydrolase I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07270 AT3G07270
fragaria_vesca	FvH4_2g18370 FvH4_2g18370 FvH4_2g18370
malus_domestica	MD05G1169300.v1.1 MD10G1157600.v1.1
prunus_persica	Prupe.8G196500_v2.0.a1 Prupe.8G196500_v2.0.a1
pyrus_communis	pycom05g15690
rosa_chinensis	RchiOBHm_Chr6g0283751
rosa_laevigata	RLG00000012801
rosa_multiflora	Rmu_sc0001521.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185210
rosa_rugosa	Rorug06G0157600
rosa_samantha	Rh6AG269700 Rh6BG271800 Rh6CG272000 Rh6DG265600
rosa_wichuraiana	Rw6G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	312
AclWI	GGATC	4 cut(s)	605, 618, 744, 757
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	2 cut(s)	214, 338
AcuI	CTGAAG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	960
AfiI	CCNNNNNNNGG	4 cut(s)	253, 312, 713, 817
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	5 cut(s)	110, 293, 437, 474, 975
AjnI	CCWGG	2 cut(s)	12, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
Alw21I	GWGCWC	3 cut(s)	143, 516, 666
Alw26I	GTCTC	4 cut(s)	369, 430, 687, 817
AlwI	GGATC	4 cut(s)	605, 618, 744, 757
AlwNI	CAGNNNCTG	2 cut(s)	281, 848
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	738, 993
ApeKI	GCWGC	2 cut(s)	636, 986
ApoI	RAATTY	2 cut(s)	214, 338
AspS9I	GGNCC	2 cut(s)	993, 1034
AsuHPI	GGTGA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	1034
BamHI	GGATCC	2 cut(s)	610, 749
BanII	GRGCYC	2 cut(s)	516, 666
BbsI	GAAGAC	3 cut(s)	98, 323, 501
Bbv12I	GWGCWC	3 cut(s)	143, 516, 666
BbvI	GCAGC	2 cut(s)	623, 973
BccI	CCATC	2 cut(s)	246, 403
BceAI	ACGGC	2 cut(s)	753, 848
BciT130I	CCWGG	2 cut(s)	14, 812
BcoDI	GTCTC	4 cut(s)	369, 430, 687, 817
BfaI	CTAG	3 cut(s)	125, 603, 915
BfmI	CTRYAG	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	637, 987
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	2 cut(s)	638, 988
BmcAI	AGTACT	1 cut(s)	960
Bme1390I	CCNGG	2 cut(s)	14, 812
Bme18I	GGWCC	1 cut(s)	1034
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	993, 1034
BmiI	GGNNCC	4 cut(s)	188, 612, 751, 1035
BmrFI	CCNGG	2 cut(s)	14, 812
BmrI	ACTGGG	2 cut(s)	497, 971
BmsI	GCATC	3 cut(s)	168, 703, 863
BmuI	ACTGGG	2 cut(s)	497, 971
BpiI	GAAGAC	3 cut(s)	98, 323, 501
BpmI	CTGGAG	3 cut(s)	173, 303, 794
Bpu1102I	GCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	2 cut(s)	364, 391
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	154, 247
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 312, 713, 817
Bse118I	RCCGGY	2 cut(s)	170, 410
Bse1I	ACTGG	4 cut(s)	190, 370, 492, 966
Bse3DI	GCAATG	1 cut(s)	951
BseBI	CCWGG	2 cut(s)	14, 812
BseDI	CCNNGG	2 cut(s)	154, 247
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	4 cut(s)	253, 312, 713, 817
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	3 cut(s)	156, 651, 698
BseNI	ACTGG	4 cut(s)	190, 370, 492, 966
BseXI	GCAGC	2 cut(s)	623, 973
BsgI	GTGCAG	2 cut(s)	134, 836
BshFI	GGCC	2 cut(s)	740, 995
BsiHKAI	GWGCWC	3 cut(s)	143, 516, 666
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	171, 411
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	4 cut(s)	253, 312, 713, 817
BsmAI	GTCTC	4 cut(s)	369, 430, 687, 817
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	740, 995
Bso31I	GGTCTC	1 cut(s)	687
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	143, 516, 666
Bsp143I	GATC	5 cut(s)	401, 482, 610, 749, 909
Bsp1720I	GCTNAGC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	154
BspANI	GGCC	2 cut(s)	740, 995
BspCNI	CTCAG	3 cut(s)	155, 652, 697
BspLI	GGNNCC	4 cut(s)	188, 612, 751, 1035
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	4 cut(s)	605, 618, 744, 757
BspTI	CTTAAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	951
BsrFI	RCCGGY	2 cut(s)	170, 410
BsrI	ACTGG	4 cut(s)	190, 370, 492, 966
BssAI	RCCGGY	2 cut(s)	170, 410
BssECI	CCNNGG	2 cut(s)	154, 247
BssMI	GATC	5 cut(s)	401, 482, 610, 749, 909
BssT1I	CCWWGG	2 cut(s)	154, 247
Bst2UI	CCWGG	2 cut(s)	14, 812
Bst4CI	ACNGT	1 cut(s)	850
Bst6I	CTCTTC	1 cut(s)	777
BstAFI	CTTAAG	1 cut(s)	64
BstC8I	GCNNGC	3 cut(s)	71, 168, 532
BstDEI	CTNAG	4 cut(s)	142, 479, 660, 684
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	5 cut(s)	404, 485, 613, 752, 912
BstMAI	GTCTC	4 cut(s)	369, 430, 687, 817
BstMBI	GATC	5 cut(s)	401, 482, 610, 749, 909
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 814, 953, 992
BstNI	CCWGG	2 cut(s)	14, 812
BstSCI	CCNGG	2 cut(s)	12, 810
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	623, 973
BstV2I	GAAGAC	3 cut(s)	98, 323, 501
BstX2I	RGATCY	2 cut(s)	610, 749
BstYI	RGATCY	2 cut(s)	610, 749
BsuRI	GGCC	2 cut(s)	740, 995
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	257
BtsI	GCAGTG	2 cut(s)	459, 1020
BtsIMutI	CAGTG	5 cut(s)	197, 459, 485, 692, 1020
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	3 cut(s)	71, 168, 532
CaiI	CAGNNNCTG	2 cut(s)	281, 848
Cfr10I	RCCGGY	2 cut(s)	170, 410
Cfr13I	GGNCC	2 cut(s)	993, 1034
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	959
CviAII	CATG	3 cut(s)	26, 155, 1038
CviQI	GTAC	1 cut(s)	959
DdeI	CTNAG	4 cut(s)	142, 479, 660, 684
DpnI	GATC	5 cut(s)	403, 484, 612, 751, 911
DpnII	GATC	5 cut(s)	401, 482, 610, 749, 909
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Ecl136II	GAGCTC	2 cut(s)	514, 664
Eco130I	CCWWGG	2 cut(s)	154, 247
Eco24I	GRGCYC	2 cut(s)	516, 666
Eco31I	GGTCTC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	1034
Eco53kI	GAGCTC	2 cut(s)	514, 664
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	2 cut(s)	514, 664
EcoRII	CCWGG	2 cut(s)	12, 810
EcoT14I	CCWWGG	2 cut(s)	154, 247
EcoT38I	GRGCYC	2 cut(s)	516, 666
ErhI	CCWWGG	2 cut(s)	154, 247
FaeI	CATG	3 cut(s)	29, 158, 1041
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	25, 154, 1037
Fnu4HI	GCNGC	2 cut(s)	637, 987
FokI	GGATG	1 cut(s)	264
FriOI	GRGCYC	2 cut(s)	516, 666
Fsp4HI	GCNGC	2 cut(s)	637, 987
FspBI	CTAG	3 cut(s)	125, 603, 915
GluI	GCNGC	2 cut(s)	637, 987
GsuI	CTGGAG	3 cut(s)	173, 303, 794
HaeIII	GGCC	2 cut(s)	740, 995
HapII	CCGG	2 cut(s)	171, 411
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	29, 158, 1041
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	5 cut(s)	221, 236, 328, 377, 437
HpaII	CCGG	2 cut(s)	171, 411
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	50, 197
Hpy188I	TCNGA	3 cut(s)	336, 344, 661
Hpy188III	TCNNGA	9 cut(s)	78, 110, 233, 282, 399, 427, 559, 915, 1032
Hpy8I	GTNNAC	2 cut(s)	50, 197
HpyAV	CCTTC	3 cut(s)	51, 424, 740
HpyCH4III	ACNGT	1 cut(s)	850
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	8 cut(s)	151, 464, 639, 724, 817, 956, 989, 1006
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 814, 953, 992
HpyF3I	CTNAG	4 cut(s)	142, 479, 660, 684
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	29, 158, 1041
Kzo9I	GATC	5 cut(s)	401, 482, 610, 749, 909
LmnI	GCTCC	3 cut(s)	192, 511, 813
Lsp1109I	GCAGC	2 cut(s)	623, 973
LweI	GCATC	3 cut(s)	168, 703, 863
MaeI	CTAG	3 cut(s)	125, 603, 915
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	5 cut(s)	403, 484, 612, 751, 911
MboI	GATC	5 cut(s)	401, 482, 610, 749, 909
MboII	GAAGA	5 cut(s)	98, 323, 396, 506, 764
MfeI	CAATTG	2 cut(s)	385, 783
MflI	RGATCY	2 cut(s)	610, 749
MhlI	GDGCHC	3 cut(s)	143, 516, 666
MluCI	AATT	8 cut(s)	214, 260, 338, 385, 474, 562, 568, 783
MlyI	GAGTC	3 cut(s)	230, 337, 371
MnlI	CCTC	5 cut(s)	338, 624, 883, 911, 1022
MseI	TTAA	3 cut(s)	18, 65, 804
MslI	CAYNNNNRTG	3 cut(s)	353, 624, 905
MspCI	CTTAAG	1 cut(s)	64
MspI	CCGG	2 cut(s)	171, 411
MspR9I	CCNGG	2 cut(s)	14, 812
MunI	CAATTG	2 cut(s)	385, 783
MvaI	CCWGG	2 cut(s)	14, 812
MwoI	GCNNNNNNNGC	4 cut(s)	176, 814, 953, 992
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	5 cut(s)	401, 482, 610, 749, 909
NlaIII	CATG	3 cut(s)	29, 158, 1041
NlaIV	GGNNCC	4 cut(s)	188, 612, 751, 1035
NmuCI	GTSAC	1 cut(s)	457
PaeR7I	CTCGAG	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	221, 437
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	638, 988
PleI	GAGTC	3 cut(s)	230, 336, 371
PpsI	GAGTC	3 cut(s)	230, 336, 371
Psp124BI	GAGCTC	2 cut(s)	516, 666
Psp6I	CCWGG	2 cut(s)	12, 810
PspGI	CCWGG	2 cut(s)	12, 810
PspN4I	GGNNCC	4 cut(s)	188, 612, 751, 1035
PspPI	GGNCC	2 cut(s)	993, 1034
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	2 cut(s)	281, 848
PsuI	RGATCY	2 cut(s)	610, 749
RsaI	GTAC	1 cut(s)	960
RsaNI	GTAC	1 cut(s)	959
RseI	CAYNNNNRTG	3 cut(s)	353, 624, 905
SacI	GAGCTC	2 cut(s)	516, 666
SaqAI	TTAA	3 cut(s)	18, 65, 804
SatI	GCNGC	2 cut(s)	637, 987
Sau3AI	GATC	5 cut(s)	401, 482, 610, 749, 909
Sau96I	GGNCC	2 cut(s)	993, 1034
ScaI	AGTACT	1 cut(s)	960
SchI	GAGTC	3 cut(s)	230, 337, 371
ScrFI	CCNGG	2 cut(s)	14, 812
SduI	GDGCHC	3 cut(s)	143, 516, 666
SfaNI	GCATC	3 cut(s)	168, 703, 863
SfcI	CTRYAG	1 cut(s)	462
Sfr274I	CTCGAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	1034
SlaI	CTCGAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	3 cut(s)	353, 624, 905
SmlI	CTYRAG	4 cut(s)	64, 78, 370, 379
SmoI	CTYRAG	4 cut(s)	64, 78, 370, 379
Sse9I	AATT	8 cut(s)	214, 260, 338, 385, 474, 562, 568, 783
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	3 cut(s)	125, 603, 915
SstI	GAGCTC	2 cut(s)	516, 666
StyD4I	CCNGG	2 cut(s)	12, 810
StyI	CCWWGG	2 cut(s)	154, 247
TaaI	ACNGT	1 cut(s)	850
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	4 cut(s)	79, 234, 400, 428
TasI	AATT	8 cut(s)	214, 260, 338, 385, 474, 562, 568, 783
TatI	WGTACW	1 cut(s)	958
TfiI	GAWTC	2 cut(s)	221, 437
Tru1I	TTAA	3 cut(s)	18, 65, 804
Tru9I	TTAA	3 cut(s)	18, 65, 804
TscAI	CASTG	5 cut(s)	197, 466, 492, 692, 1027
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	636, 986
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	5 cut(s)	147, 194, 312, 566, 593
TspRI	CASTG	5 cut(s)	197, 466, 492, 692, 1027
Van91I	CCANNNNNTGG	1 cut(s)	312
Vha464I	CTTAAG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	1034
XapI	RAATTY	2 cut(s)	214, 338
XbaI	TCTAGA	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	2 cut(s)	451, 958
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	3 cut(s)	125, 603, 915
ZrmI	AGTACT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.