Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011449

Physical Location & Seq

Genomic Coordinates Forward (+)

22564414 .. 22566768

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0157600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAATACGGAAGGTTTTGGGATGAAAATCAGTAAAACAGAGGTGAACTTGAGGAGGCTGCTTGCAGCTGCTCCTCAGCAACAAAACCAGGCAAAACTTTCGCATTATGTTGCTACTTTACGAGAACAGGTAGAACAGCTAGCTGAAGAGAGAACACCGGAAGGCTTACCTAGAGTTTCAAAGGCTGTCTTAAGTGACTATTCAGAGAAGATCGAAGCCATTGCTTCGAAATTAGCTGCTCCATTGCCTGATTTGCAAGAACCACAGGAGTCCCTTGCAAGAATTTCGGTTAAAGCAAAGTCTTCTGAAACAGGAGACAATCAGAGTCCCCATTCTCCAGGTCTGAGAAGAAGATTTGTGCCCAACTCAAACATCCAAGATGGAACTCGTGAGACTCCTAGTGCAGATTCTTTGTCACCTGTCAAACTTGACGCTGCAGCTCAAGCGCACATTGAAAAGCATAGAAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGGTTGGCAAGGCAACTCAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAGAACACTGAAAAACTACTTGACTCTACAGAGGAGGCTGTAGAAAGGAGCTTGGCTAGCACTGGTCATGCCACTGCACGGGCATCCGATATATACTCAAAGACCTCCAAGACTTCATGTTTCACATGGCTTTTGATGTTTCTAATGACGTGTATATTCATTATGGTGGTACTTTTAATTCGTGTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003933 GO:0003934 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006725 GO:0006729 GO:0006732 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0008277 GO:0009058 GO:0009108 GO:0009966 GO:0009987 GO:0010646 GO:0016020 GO:0016787 GO:0016810 GO:0016814 GO:0017076 GO:0017144 GO:0018130 GO:0019001 GO:0019238 GO:0019438 GO:0019637 GO:0019751 GO:0023051 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034311 GO:0034312 GO:0034641 GO:0035639 GO:0035998 GO:0036094 GO:0042558 GO:0042559 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046146 GO:0046165 GO:0046173 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051066 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

GTP_cyclohydroI

Protein Analysis

246

Amino Acids

27.26

Weight (kDa)

6.61

Isoelectric Point (pI)

64.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Use1	PF09753	12 - 246	9.1e-70	Membrane fusion protein Use1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07270 AT3G07270
fragaria_vesca	FvH4_2g18370 FvH4_2g18370 FvH4_2g18370
malus_domestica	MD05G1169300.v1.1 MD10G1157600.v1.1
prunus_persica	Prupe.8G196500_v2.0.a1 Prupe.8G196500_v2.0.a1
pyrus_communis	pycom05g15690
rosa_chinensis	RchiOBHm_Chr6g0283751
rosa_laevigata	RLG00000012801
rosa_multiflora	Rmu_sc0001521.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185210
rosa_rugosa	Rorug06G0157600
rosa_samantha	Rh6AG269700 Rh6BG271800 Rh6CG272000 Rh6DG265600
rosa_wichuraiana	Rw6G023310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	165, 455
AdeI	CACNNNGTG	1 cut(s)	547
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	1 cut(s)	627
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	180, 455
AhlI	ACTAGT	1 cut(s)	524
AjiI	CACGTC	1 cut(s)	699
AjnI	CCWGG	2 cut(s)	87, 337
AluBI	AGCT	6 cut(s)	68, 139, 143, 236, 440, 600
AluI	AGCT	6 cut(s)	68, 139, 143, 236, 440, 600
Alw26I	GTCTC	4 cut(s)	309, 386, 515, 533
ApeKI	GCWGC	6 cut(s)	58, 65, 68, 236, 434, 437
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	55, 408
AsuII	TTCGAA	1 cut(s)	227
AsuNHI	GCTAGC	2 cut(s)	139, 605
BaeGI	GKGCMC	1 cut(s)	363
BauI	CACGAG	1 cut(s)	387
BbsI	GAAGAC	2 cut(s)	294, 472
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	6 cut(s)	45, 55, 77, 223, 421, 449
BccI	CCATC	1 cut(s)	374
BcgI	CGANNNNNNTGC	6 cut(s)	81, 115, 203, 237, 267, 301
BciT130I	CCWGG	2 cut(s)	89, 339
BcoDI	GTCTC	4 cut(s)	309, 386, 515, 533
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	5 cut(s)	140, 171, 399, 525, 606
BfmI	CTRYAG	3 cut(s)	435, 576, 588
BfrI	CTTAAG	1 cut(s)	190
BisI	GCNGC	6 cut(s)	59, 66, 69, 237, 435, 438
BlsI	GCNGC	6 cut(s)	60, 67, 70, 238, 436, 439
Bme1390I	CCNGG	2 cut(s)	89, 339
BmgBI	CACGTC	1 cut(s)	699
BmrFI	CCNGG	2 cut(s)	89, 339
BmsI	GCATC	1 cut(s)	641
BmtI	GCTAGC	2 cut(s)	143, 609
BpiI	GAAGAC	2 cut(s)	294, 472
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	70, 426
BsaBI	GATNNNNATC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	2 cut(s)	219, 242
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	89, 339
BseGI	GGATG	3 cut(s)	27, 372, 632
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMI	GCAATG	2 cut(s)	219, 242
BseMII	CTCAG	2 cut(s)	89, 335
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	3 cut(s)	63, 67, 596
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	6 cut(s)	45, 55, 77, 223, 421, 449
BsgI	GTGCAG	3 cut(s)	423, 569, 609
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	256, 312
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	4 cut(s)	309, 386, 515, 533
BsmFI	GGGAC	2 cut(s)	256, 312
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	88, 336
BspHI	TCATGA	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	439
BspOI	GCTAGC	2 cut(s)	143, 609
BspT104I	TTCGAA	1 cut(s)	227
BspTI	CTTAAG	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	219, 242
BsrI	ACTGG	1 cut(s)	616
BssMI	GATC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	89, 339
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	63, 141, 607
BstDEI	CTNAG	3 cut(s)	75, 344, 738
BstF5I	GGATG	3 cut(s)	27, 372, 632
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	4 cut(s)	309, 386, 515, 533
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 443, 606
BstNI	CCWGG	2 cut(s)	89, 339
BstSCI	CCNGG	2 cut(s)	87, 337
BstSFI	CTRYAG	3 cut(s)	435, 576, 588
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	6 cut(s)	45, 55, 77, 223, 421, 449
BstV2I	GAAGAC	2 cut(s)	294, 472
BtrI	CACGTC	1 cut(s)	699
BtsCI	GGATG	3 cut(s)	27, 372, 632
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	555, 609, 621
Cac8I	GCNNGC	3 cut(s)	63, 141, 607
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	448
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	4 cut(s)	532, 617, 666, 675
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	3 cut(s)	75, 344, 738
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
DraIII	CACNNNGTG	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	165, 455
EcoRII	CCWGG	2 cut(s)	87, 337
FaeI	CATG	4 cut(s)	535, 620, 669, 678
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	2 cut(s)	256, 312
FatI	CATG	4 cut(s)	531, 616, 665, 674
Fnu4HI	GCNGC	6 cut(s)	59, 66, 69, 237, 435, 438
FokI	GGATG	3 cut(s)	34, 359, 619
Fsp4HI	GCNGC	6 cut(s)	59, 66, 69, 237, 435, 438
FspBI	CTAG	5 cut(s)	140, 171, 399, 525, 606
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	6 cut(s)	59, 66, 69, 237, 435, 438
GsuI	CTGGAG	1 cut(s)	321
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	4 cut(s)	535, 620, 669, 678
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	5 cut(s)	269, 325, 394, 407, 572
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	55, 408
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	5 cut(s)	205, 307, 324, 345, 637
Hpy188III	TCNNGA	3 cut(s)	389, 473, 532
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	5, 155
HpyCH4IV	ACGT	1 cut(s)	698
HpyCH4V	TGCA	7 cut(s)	65, 256, 278, 404, 437, 550, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 443, 606
HpyF3I	CTNAG	3 cut(s)	75, 344, 738
HpySE526I	ACGT	1 cut(s)	698
Hsp92II	CATG	4 cut(s)	535, 620, 669, 678
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	76, 244, 597
Lsp1109I	GCAGC	6 cut(s)	45, 55, 77, 223, 421, 449
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	5 cut(s)	140, 171, 399, 525, 606
MaeII	ACGT	1 cut(s)	698
MaeIII	GTNAC	3 cut(s)	194, 414, 733
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	6 cut(s)	158, 220, 294, 360, 363, 477
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	230, 282, 726
MlyI	GAGTC	4 cut(s)	278, 334, 388, 566
MnlI	CCTC	8 cut(s)	34, 45, 48, 84, 469, 574, 577, 664
MseI	TTAA	3 cut(s)	191, 291, 725
MslI	CAYNNNNRTG	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	89, 339
MvaI	CCWGG	2 cut(s)	89, 339
MwoI	GCNNNNNNNGC	3 cut(s)	253, 443, 606
NdeII	GATC	1 cut(s)	210
NheI	GCTAGC	2 cut(s)	139, 605
NlaIII	CATG	4 cut(s)	535, 620, 669, 678
NmuCI	GTSAC	3 cut(s)	194, 414, 733
NspV	TTCGAA	1 cut(s)	227
PagI	TCATGA	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	6 cut(s)	60, 67, 70, 238, 436, 439
PleI	GAGTC	4 cut(s)	277, 333, 388, 566
PpsI	GAGTC	4 cut(s)	277, 333, 388, 566
Psp6I	CCWGG	2 cut(s)	87, 337
PspGI	CCWGG	2 cut(s)	87, 337
PstI	CTGCAG	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	3 cut(s)	191, 291, 725
SatI	GCNGC	6 cut(s)	59, 66, 69, 237, 435, 438
Sau3AI	GATC	1 cut(s)	210
SchI	GAGTC	4 cut(s)	278, 334, 388, 566
ScrFI	CCNGG	2 cut(s)	89, 339
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	3 cut(s)	435, 576, 588
SfuI	TTCGAA	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	3 cut(s)	49, 190, 441
SmoI	CTYRAG	3 cut(s)	49, 190, 441
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	3 cut(s)	230, 282, 726
SspMI	CTAG	5 cut(s)	140, 171, 399, 525, 606
StyD4I	CCNGG	2 cut(s)	87, 337
TaiI	ACGT	1 cut(s)	701
TaqI	TCGA	2 cut(s)	213, 227
TasI	AATT	3 cut(s)	230, 282, 726
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	191, 291, 725
Tru9I	TTAA	3 cut(s)	191, 291, 725
TscAI	CASTG	3 cut(s)	562, 616, 628
TseFI	GTSAC	3 cut(s)	194, 414, 733
TseI	GCWGC	6 cut(s)	58, 65, 68, 236, 434, 437
Tsp45I	GTSAC	3 cut(s)	194, 414, 733
TspDTI	ATGAA	5 cut(s)	17, 38, 504, 654, 697
TspGWI	ACGGA	2 cut(s)	23, 535
TspRI	CASTG	3 cut(s)	562, 616, 628
Vha464I	CTTAAG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	282
XspI	CTAG	5 cut(s)	140, 171, 399, 525, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.