FvH4_2g18370

GTP cyclohydrolase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
15751118 .. 15754470
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18370.t3

Sequence Viewer

Length: 1227 bp
ATGTCTATCAAAAGCATCAAGAATGGCTTCAACTTGTCGCCTGGTTATAGACAAAAGGTCAAGGACATTGTGCAAGGCGCATTATTCCCTGAAGCTGGTCTGGATAATGCAGTTGGTCATGCTGGAGGAGCTGGTGGACTTGTGGTTGTTCGAGATCTGGACCTCTTCTCCTATTGTGAATCTTGTATGCTACCATTCCAGGTTAAATGTCATGTTGGTTATGTCCCTTCTGGTCAACGAGTTGTAGGCTTAAGCAAGCTCTCTCGAGTAGCTGACGTGTTTGGAAAACGTCTTCAAGAGCCTCAGCGTCTAGCAGATGAATTGTGTTCAGCCCTGCACCATGGCATCAAGCCAGCCGGTGTCGCTGTCATGCTCCAGTGTTCACACATTCATTTTCCAAATTTAGAATCAGCTATTCTTGACTCGAACCACCAAGGATGGGTAAAATTGCTGGTTAGTTCTGGTTCTGGAGCTTTTGAAAATGAGAGTGCCGATATTTGGGCAGATTTTTTGAGTCTTCTGAAATTCAGAGGCATAGATGTGGATAAAACTTGCTTGAGAGACTCGAGCGACTGGTGTCCATCTCGATCTTCAGGCAGCGTTAATGCTGTTATTAAGGTTGAATCAGCCAATCAGGGAATGATCATTGCAGTAACTTCAATTCTTAGATCACTTGGTGAAGACCCATTAAGGAAGGAGCTCGTAGGAACACCTGCTCGTTTTGTTAAGTGGTTGATGAACTTCCAGAATTGTAATTTGGATATGAAGCTGAATGGGTTCGTATCTGCTAGGGTGGATCCTCTACATCCCAATGGAGACAGCTGCAAAGAAAAGCAAATCCATTCAGAGCTGAACTTGTCTCTTTGGTCTCAGTGTGAGCATCATTTACTTCCCTTTTATGGTGTTGTGCATATAGGATATATGTGCGCAGAAGGATCCATTCCCATTGGAAAGTCTCTACTACAATCAATTGTGTGTTTCTATGGTTTCAAGCTCCAGGTGCAGGAAAGACTCACGCGGCAGATAGCAGAAACTGTGTCATCACTTTCAGGTGGAGATGTGATGGTTGTTGTGGAGGCTAAGCACACCTGTATGATATCTAGAGGGATTGAGAAGTTTGGTAGTAGCACAGCTACAATTGCAGTACTGGGTCGTTTTTCAACTGACCCTGCTGCAAGGGCCAAGTTTTTGCAGAGCCTCCCAAACAATGCCATTTCAGGACCGTGA

Protein Analysis

409

Amino Acids

44.3

Weight (kDa)

8.18

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_cyclohydroI PF01227 35 - 187 1.3e-34 GTP cyclohydrolase I
GTP_cyclohydroI PF01227 274 - 456 1.2e-38 GTP cyclohydrolase I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011449)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 721
Acc16I TGCGCA 1 cut(s) 928
Acc36I ACCTGC 1 cut(s) 721
AccII CGCG 1 cut(s) 1018
AciI CCGC 1 cut(s) 1018
AclWI GGATC 4 cut(s) 791, 804, 930, 943
AcsI RAATTY 2 cut(s) 400, 524
AcuI CTGAAG 2 cut(s) 111, 576
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 1 cut(s) 1146
AfiI CCNNNNNNNGG 5 cut(s) 95, 439, 498, 899, 1003
AflII CTTAAG 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 7 cut(s) 31, 296, 479, 623, 660, 991, 1161
AhdI GACNNNNNGTC 1 cut(s) 56
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 3 cut(s) 40, 198, 996
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 5 cut(s) 555, 810, 864, 873, 960
AlwI GGATC 4 cut(s) 791, 804, 930, 943
AlwNI CAGNNNCTG 1 cut(s) 1034
Ama87I CYCGRG 2 cut(s) 264, 565
AoxI GGCC 1 cut(s) 1179
ApeKI GCWGC 3 cut(s) 597, 822, 1172
ApoI RAATTY 2 cut(s) 400, 524
Asp700I GAANNNNTTC 2 cut(s) 26, 776
AspLEI GCGC 2 cut(s) 80, 929
AspS9I GGNCC 3 cut(s) 160, 1179, 1220
AsuHPI GGTGA 1 cut(s) 689
AvaI CYCGRG 2 cut(s) 264, 565
AvaII GGWCC 2 cut(s) 160, 1220
BamHI GGATCC 2 cut(s) 796, 935
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 3 cut(s) 284, 509, 687
Bbv12I GWGCWC 1 cut(s) 702
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 609, 809, 1159
BccI CCATC 3 cut(s) 432, 589, 1057
BciT130I CCWGG 3 cut(s) 42, 200, 998
BclI TGATCA 1 cut(s) 642
BcoDI GTCTC 5 cut(s) 555, 810, 864, 873, 960
BfaI CTAG 3 cut(s) 311, 789, 1101
BfrI CTTAAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 721
BglII AGATCT 1 cut(s) 154
BisI GCNGC 4 cut(s) 598, 823, 1019, 1173
BlpI GCTNAGC 1 cut(s) 1080
BlsI GCNGC 4 cut(s) 599, 824, 1020, 1174
BmcAI AGTACT 1 cut(s) 1146
Bme1390I CCNGG 3 cut(s) 42, 200, 998
Bme18I GGWCC 2 cut(s) 160, 1220
BmeRI GACNNNNNGTC 1 cut(s) 56
BmeT110I CYCGRG 2 cut(s) 264, 565
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 160, 1179, 1220
BmiI GGNNCC 2 cut(s) 798, 937
BmrFI CCNGG 3 cut(s) 42, 200, 998
BmrI ACTGGG 1 cut(s) 1157
BmsI GCATC 3 cut(s) 24, 354, 889
BmuI ACTGGG 1 cut(s) 1157
BoxI GACNNNNGTC 1 cut(s) 576
BpiI GAAGAC 3 cut(s) 284, 509, 687
BpmI CTGGAG 4 cut(s) 144, 359, 489, 980
Bpu10I CCTNAGC 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 1080
BpuEI CTTGAG 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 873
BsaJI CCNNGG 2 cut(s) 340, 433
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 439, 498, 899, 1003
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 376, 578, 1152
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 3 cut(s) 42, 200, 998
BseDI CCNNGG 2 cut(s) 340, 433
BseGI GGATG 2 cut(s) 443, 805
BseLI CCNNNNNNNGG 5 cut(s) 95, 439, 498, 899, 1003
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 317, 884
BseNI ACTGG 3 cut(s) 376, 578, 1152
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 609, 809, 1159
BsgI GTGCAG 2 cut(s) 320, 1022
Bsh1236I CGCG 1 cut(s) 1018
BshFI GGCC 1 cut(s) 1181
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 2 cut(s) 264, 565
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 5 cut(s) 95, 439, 498, 899, 1003
BsmAI GTCTC 5 cut(s) 555, 810, 864, 873, 960
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 1181
Bso31I GGTCTC 1 cut(s) 873
BsoBI CYCGRG 2 cut(s) 264, 565
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 6 cut(s) 154, 587, 642, 668, 796, 935
Bsp1720I GCTNAGC 1 cut(s) 1080
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 1 cut(s) 1018
BspANI GGCC 1 cut(s) 1181
BspCNI CTCAG 2 cut(s) 316, 883
BspFNI CGCG 1 cut(s) 1018
BspLI GGNNCC 2 cut(s) 798, 937
BspMI ACCTGC 1 cut(s) 721
BspPI GGATC 4 cut(s) 791, 804, 930, 943
BspTI CTTAAG 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 873
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 376, 578, 1152
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 340, 433
BssMI GATC 6 cut(s) 154, 587, 642, 668, 796, 935
BssT1I CCWWGG 2 cut(s) 340, 433
Bst2UI CCWGG 3 cut(s) 42, 200, 998
Bst4CI ACNGT 2 cut(s) 1036, 1224
Bst6I CTCTTC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 257, 354
BstDEI CTNAG 4 cut(s) 303, 665, 870, 1080
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 2 cut(s) 443, 805
BstFNI CGCG 1 cut(s) 1018
BstHHI GCGC 2 cut(s) 80, 929
BstKTI GATC 6 cut(s) 157, 590, 645, 671, 799, 938
BstMAI GTCTC 5 cut(s) 555, 810, 864, 873, 960
BstMBI GATC 6 cut(s) 154, 587, 642, 668, 796, 935
BstMWI GCNNNNNNNGC 5 cut(s) 128, 362, 1000, 1139, 1178
BstNI CCWGG 3 cut(s) 42, 200, 998
BstPAI GACNNNNGTC 1 cut(s) 576
BstSCI CCNGG 3 cut(s) 40, 198, 996
BstUI CGCG 1 cut(s) 1018
BstV1I GCAGC 3 cut(s) 609, 809, 1159
BstV2I GAAGAC 3 cut(s) 284, 509, 687
BstX2I RGATCY 3 cut(s) 154, 796, 935
BstYI RGATCY 3 cut(s) 154, 796, 935
BsuRI GGCC 1 cut(s) 1181
BtgI CCRYGG 1 cut(s) 340
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 443, 805
BtsIMutI CAGTG 2 cut(s) 383, 878
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 2 cut(s) 257, 354
CaiI CAGNNNCTG 1 cut(s) 1034
CfoI GCGC 2 cut(s) 80, 929
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 160, 1179, 1220
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 1145
CviAII CATG 4 cut(s) 119, 212, 341, 370
CviQI GTAC 1 cut(s) 1145
DdeI CTNAG 4 cut(s) 303, 665, 870, 1080
DpnI GATC 6 cut(s) 156, 589, 644, 670, 798, 937
DpnII GATC 6 cut(s) 154, 587, 642, 668, 796, 935
DraIII CACNNNGTG 1 cut(s) 677
DriI GACNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 170
Eam1105I GACNNNNNGTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 2 cut(s) 340, 433
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 873
Eco32I GATATC 1 cut(s) 1098
Eco47I GGWCC 2 cut(s) 160, 1220
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 2 cut(s) 111, 576
Eco88I CYCGRG 2 cut(s) 264, 565
EcoICRI GAGCTC 1 cut(s) 700
EcoRII CCWGG 3 cut(s) 40, 198, 996
EcoRV GATATC 1 cut(s) 1098
EcoT14I CCWWGG 2 cut(s) 340, 433
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 340, 433
FaeI CATG 4 cut(s) 122, 215, 344, 373
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 209
FatI CATG 4 cut(s) 118, 211, 340, 369
FbaI TGATCA 1 cut(s) 642
Fnu4HI GCNGC 4 cut(s) 598, 823, 1019, 1173
FokI GGATG 2 cut(s) 450, 792
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 4 cut(s) 598, 823, 1019, 1173
FspBI CTAG 3 cut(s) 311, 789, 1101
FspI TGCGCA 1 cut(s) 928
GlaI GCGC 2 cut(s) 79, 928
GluI GCNGC 4 cut(s) 598, 823, 1019, 1173
GsuI CTGGAG 4 cut(s) 144, 359, 489, 980
HaeIII GGCC 1 cut(s) 1181
HapII CCGG 1 cut(s) 357
HgaI GACGC 1 cut(s) 296
HhaI GCGC 2 cut(s) 80, 929
Hin1II CATG 4 cut(s) 122, 215, 344, 373
Hin6I GCGC 2 cut(s) 78, 927
HinP1I GCGC 2 cut(s) 78, 927
HincII GTYRAC 1 cut(s) 236
HindII GTYRAC 1 cut(s) 236
HinfI GANTC 7 cut(s) 179, 407, 422, 514, 563, 623, 1011
HpaII CCGG 1 cut(s) 357
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 3 cut(s) 137, 236, 383
Hpy188I TCNGA 3 cut(s) 522, 530, 847
Hpy8I GTNNAC 3 cut(s) 137, 236, 383
HpyAV CCTTC 3 cut(s) 237, 688, 926
HpyCH4III ACNGT 2 cut(s) 1036, 1224
HpyCH4IV ACGT 2 cut(s) 276, 289
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 362, 1000, 1139, 1178
HpyF3I CTNAG 4 cut(s) 303, 665, 870, 1080
HpySE526I ACGT 2 cut(s) 276, 289
Hsp92II CATG 4 cut(s) 122, 215, 344, 373
HspAI GCGC 2 cut(s) 78, 927
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 6 cut(s) 154, 587, 642, 668, 796, 935
LmnI GCTCC 5 cut(s) 128, 378, 470, 697, 999
Lsp1109I GCAGC 3 cut(s) 609, 809, 1159
LweI GCATC 3 cut(s) 24, 354, 889
MaeI CTAG 3 cut(s) 311, 789, 1101
MaeII ACGT 2 cut(s) 276, 289
MaeIII GTNAC 1 cut(s) 652
MalI GATC 6 cut(s) 156, 589, 644, 670, 798, 937
MboI GATC 6 cut(s) 154, 587, 642, 668, 796, 935
MboII GAAGA 5 cut(s) 157, 284, 509, 582, 692
MfeI CAATTG 2 cut(s) 969, 1137
MflI RGATCY 3 cut(s) 154, 796, 935
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 9 cut(s) 320, 400, 446, 524, 660, 748, 754, 969, 1137
MlyI GAGTC 4 cut(s) 416, 523, 557, 1005
MnlI CCTC 8 cut(s) 119, 173, 312, 524, 810, 1069, 1097, 1208
MroXI GAANNNNTTC 2 cut(s) 26, 776
MseI TTAA 6 cut(s) 204, 251, 603, 615, 689, 726
MslI CAYNNNNRTG 3 cut(s) 539, 810, 1091
MspA1I CMGCKG 1 cut(s) 822
MspCI CTTAAG 1 cut(s) 250
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 3 cut(s) 42, 200, 998
MunI CAATTG 2 cut(s) 969, 1137
MvaI CCWGG 3 cut(s) 42, 200, 998
MvnI CGCG 1 cut(s) 1018
MwoI GCNNNNNNNGC 5 cut(s) 128, 362, 1000, 1139, 1178
NcoI CCATGG 1 cut(s) 340
NdeII GATC 6 cut(s) 154, 587, 642, 668, 796, 935
NlaIII CATG 4 cut(s) 122, 215, 344, 373
NlaIV GGNNCC 2 cut(s) 798, 937
NsbI TGCGCA 1 cut(s) 928
PaeR7I CTCGAG 2 cut(s) 264, 565
PaqCI CACCTGC 1 cut(s) 721
PdmI GAANNNNTTC 2 cut(s) 26, 776
PfeI GAWTC 3 cut(s) 179, 407, 623
PkrI GCNGC 4 cut(s) 599, 824, 1020, 1174
PleI GAGTC 4 cut(s) 416, 522, 557, 1005
PpsI GAGTC 4 cut(s) 416, 522, 557, 1005
PshAI GACNNNNGTC 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 3 cut(s) 40, 198, 996
PspGI CCWGG 3 cut(s) 40, 198, 996
PspN4I GGNNCC 2 cut(s) 798, 937
PspPI GGNCC 3 cut(s) 160, 1179, 1220
PspXI VCTCGAGB 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 1034
PsuI RGATCY 3 cut(s) 154, 796, 935
PvuII CAGCTG 1 cut(s) 822
RsaI GTAC 1 cut(s) 1146
RsaNI GTAC 1 cut(s) 1145
RseI CAYNNNNRTG 3 cut(s) 539, 810, 1091
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 6 cut(s) 204, 251, 603, 615, 689, 726
SatI GCNGC 4 cut(s) 598, 823, 1019, 1173
Sau3AI GATC 6 cut(s) 154, 587, 642, 668, 796, 935
Sau96I GGNCC 3 cut(s) 160, 1179, 1220
ScaI AGTACT 1 cut(s) 1146
SchI GAGTC 4 cut(s) 416, 523, 557, 1005
ScrFI CCNGG 3 cut(s) 42, 200, 998
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 3 cut(s) 24, 354, 889
Sfr274I CTCGAG 2 cut(s) 264, 565
SinI GGWCC 2 cut(s) 160, 1220
SlaI CTCGAG 2 cut(s) 264, 565
SmiMI CAYNNNNRTG 3 cut(s) 539, 810, 1091
SmlI CTYRAG 4 cut(s) 250, 264, 556, 565
SmoI CTYRAG 4 cut(s) 250, 264, 556, 565
Sse9I AATT 9 cut(s) 320, 400, 446, 524, 660, 748, 754, 969, 1137
SsiI CCGC 1 cut(s) 1018
SspMI CTAG 3 cut(s) 311, 789, 1101
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 3 cut(s) 40, 198, 996
StyI CCWWGG 2 cut(s) 340, 433
TaaI ACNGT 2 cut(s) 1036, 1224
TaiI ACGT 2 cut(s) 279, 292
TaqI TCGA 5 cut(s) 151, 265, 425, 566, 586
TasI AATT 9 cut(s) 320, 400, 446, 524, 660, 748, 754, 969, 1137
TatI WGTACW 1 cut(s) 1144
TauI GCSGC 1 cut(s) 1021
TfiI GAWTC 3 cut(s) 179, 407, 623
Tru1I TTAA 6 cut(s) 204, 251, 603, 615, 689, 726
Tru9I TTAA 6 cut(s) 204, 251, 603, 615, 689, 726
TscAI CASTG 2 cut(s) 383, 878
TseI GCWGC 3 cut(s) 597, 822, 1172
TspDTI ATGAA 4 cut(s) 333, 380, 752, 779
TspRI CASTG 2 cut(s) 383, 878
Vha464I CTTAAG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 160, 1220
XapI RAATTY 2 cut(s) 400, 524
XbaI TCTAGA 1 cut(s) 1100
XhoI CTCGAG 2 cut(s) 264, 565
XmnI GAANNNNTTC 2 cut(s) 26, 776
XspI CTAG 3 cut(s) 311, 789, 1101
ZrmI AGTACT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.