MD10G1157600.v1.1

GTP cyclohydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
24613176 .. 24616448
3273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1157600.v1.1.491

Sequence Viewer

Length: 1383 bp
ATGGGCGCTTTGGATGAAGGGCATTTCTGCTCGGAGCTTGAGAACGGAGTGAAGCTGGGTTGCATTGAGCTGAGTTTCGAGGAAGAACCCGAAACCATAGCTATTGAGGATGCTGTTAAAGTTCTCATGCAGGGCCTGGGGGAGGATGTTAACAGAGAAGGTTTGAAGAAGACGCCTTTTCGCGTTGCGAAAGCCCTCCGAGAAGGAACAAGGGGTTACAGACAAAAGGTTAAGGACATTGTGCAAGGTGCTTTATTTCCTGAAGCTGGCCTGGACAACGCAGTTGGTCATGCTGGGGGAGCTGGTGGACTTGTAGTCGTTCGAGATCTTGACCTCTTCTCATACTGTGAATCTTGTATGCTACCCTTCCAGGTTAGATGCCATGTGGGTTATGTCCCTTCTGGTCAACTGGTTGTAGGCTTAAGCAAGCTCTCTCGAGTAGCTGATGTGTTTGCAAAACGTCTCCAAGATCCCCAGCGTCTAGCAGATGAAGTGTGTTCAGCTTTACAGCATGGAATCAAAGCAGCAGGTGTTGCAGTCGTACTCCAATGTTTGCACGTCCATTTCCCAAATCTGGAATCTGTTTTCCTTGACTCGAACCACCAAGGATGGGTAGAATTACTGGTCAGCTCAGGTTCAGGAGTCTTTGAAAATGAAAATGCCAATCTTTGGGCTGACTTTTGGAGTCTGCTGAGATTCAGAGGCATAAATGTGGAGAAAACTCGCATGAGAGACACAAGCGATCACCATTGGTGTCCATCTCGTTCTTCTGCAGGTGCAATTGCTACCTCCGAGATGGAATCTATCAATCCGGGAATGGTCACTGCAGTAGCTTCAATCCTTAGGTCGTTGGGTGAAGACCCTTTAAGGAAGGAGCTTCTGGGAACACCTGCTCGTTTTGTGAAGTGGTTGATGAGCTTCCAAAATAGTAACTTTGATATGAAGTTGAATGGCTTCGTTTCTGGTAATGGAGATAGCTTCAAGGAAAAGCATATCCATTCCGAGCTGAACTTGTCATTCTGGTCTCAGTGTGAGCATCATCTACTTCCTTTCTATGGTGTTGTGCATATAGGATATATGTGCACAGAAGGATCCAATCCCATCGGAAAATCTCTTTTACAATCGATTGTGTGTTTTTACGGTTTCAAGCTCCAAGTACAAGAAAGACTCACGCGACAGATAGCAGAGACAGTATCACCACTGTTAGGTGGAGATGTGATTGTGGTTGTGGAGGCTAGCCACACCTGTATGATCTCTAGAGGGATCGAGAAGTTCGGAAGTAGTACAGCAACAATTGCTGTACTGGGTCGATTTTCAACTGACCCCGCTGCAAGAGCCAAGTTTATGCAGAGCATTCCAAACACTGCCGTTTCAGGACGATGA

Protein Analysis

461

Amino Acids

50.32

Weight (kDa)

6.12

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_cyclohydroI PF01227 35 - 187 7.8e-34 GTP cyclohydrolase I
GTP_cyclohydroI PF01227 275 - 452 1.1e-39 GTP cyclohydrolase I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011449)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 518, 764, 898
Acc36I ACCTGC 3 cut(s) 518, 764, 898
AccB7I CCANNNNNTGG 1 cut(s) 669
AccII CGCG 2 cut(s) 183, 1174
AciI CCGC 1 cut(s) 1326
AclWI GGATC 4 cut(s) 464, 1086, 1099, 1271
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 4 cut(s) 543, 1158, 1285, 1302
AfiI CCNNNNNNNGG 7 cut(s) 142, 266, 574, 610, 669, 1055, 1205
AflII CTTAAG 1 cut(s) 421
AgsI TTSAA 7 cut(s) 166, 650, 837, 949, 982, 1147, 1317
AhdI GACNNNNNGTC 1 cut(s) 314
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 3 cut(s) 135, 270, 369
Alw21I GWGCWC 1 cut(s) 1085
Alw26I GTCTC 4 cut(s) 467, 726, 1029, 1181
Alw44I GTGCAC 1 cut(s) 1081
AlwI GGATC 4 cut(s) 464, 1086, 1099, 1271
AlwNI CAGNNNCTG 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 2 cut(s) 133, 268
ApaLI GTGCAC 1 cut(s) 1081
ApeKI GCWGC 2 cut(s) 524, 1328
Asp700I GAANNNNTTC 1 cut(s) 953
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 813
AsuHPI GGTGA 3 cut(s) 737, 866, 1188
AsuNHI GCTAGC 1 cut(s) 1235
AvaI CYCGRG 1 cut(s) 435
AxyI CCTNAGG 1 cut(s) 842
BaeGI GKGCMC 1 cut(s) 1085
BamHI GGATCC 1 cut(s) 1091
BbsI GAAGAC 2 cut(s) 176, 864
Bbv12I GWGCWC 1 cut(s) 1085
BbvI GCAGC 2 cut(s) 536, 1315
BccI CCATC 4 cut(s) 603, 766, 790, 1109
BceAI ACGGC 1 cut(s) 1352
BciT130I CCWGG 3 cut(s) 137, 272, 371
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 4 cut(s) 467, 726, 1029, 1181
BfaI CTAG 3 cut(s) 482, 1236, 1257
BfmI CTRYAG 2 cut(s) 771, 825
BfoI RGCGCY 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 421
BfuAI ACCTGC 3 cut(s) 518, 764, 898
BglII AGATCT 1 cut(s) 325
BisI GCNGC 2 cut(s) 525, 1329
BlsI GCNGC 2 cut(s) 526, 1330
Bme1390I CCNGG 4 cut(s) 137, 272, 371, 813
BmeRI GACNNNNNGTC 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 1093
BmrFI CCNGG 4 cut(s) 137, 272, 371, 813
BmrI ACTGGG 1 cut(s) 1313
BmsI GCATC 3 cut(s) 100, 368, 1045
BmtI GCTAGC 1 cut(s) 1239
BmuI ACTGGG 1 cut(s) 1313
BpiI GAAGAC 2 cut(s) 176, 864
Bpu10I CCTNAGC 1 cut(s) 631
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 1124
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 1029
BsaJI CCNNGG 2 cut(s) 136, 604
Bsc4I CCNNNNNNNGG 7 cut(s) 142, 266, 574, 610, 669, 1055, 1205
Bse1I ACTGG 3 cut(s) 414, 627, 1308
Bse21I CCTNAGG 1 cut(s) 842
BseBI CCWGG 3 cut(s) 137, 272, 371
BseCI ATCGAT 1 cut(s) 1124
BseDI CCNNGG 2 cut(s) 136, 604
BseGI GGATG 4 cut(s) 19, 115, 151, 614
BseLI CCNNNNNNNGG 7 cut(s) 142, 266, 574, 610, 669, 1055, 1205
BseMII CTCAG 4 cut(s) 62, 645, 683, 1040
BseNI ACTGG 3 cut(s) 414, 627, 1308
BseSI GKGCMC 1 cut(s) 1085
BseXI GCAGC 2 cut(s) 536, 1315
BseYI CCCAGC 3 cut(s) 55, 293, 474
Bsh1236I CGCG 2 cut(s) 183, 1174
BshFI GGCC 2 cut(s) 135, 270
BshVI ATCGAT 1 cut(s) 1124
BsiHKAI GWGCWC 1 cut(s) 1085
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 7 cut(s) 142, 266, 574, 610, 669, 1055, 1205
BsmAI GTCTC 4 cut(s) 467, 726, 1029, 1181
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 1353
BsnI GGCC 2 cut(s) 135, 270
Bso31I GGTCTC 1 cut(s) 1029
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 1085
Bsp143I GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
BspACI CCGC 1 cut(s) 1326
BspANI GGCC 2 cut(s) 135, 270
BspCNI CTCAG 4 cut(s) 63, 644, 684, 1039
BspDI ATCGAT 1 cut(s) 1124
BspFNI CGCG 2 cut(s) 183, 1174
BspLI GGNNCC 1 cut(s) 1093
BspMAI CTGCAG 2 cut(s) 775, 829
BspMI ACCTGC 3 cut(s) 518, 764, 898
BspOI GCTAGC 1 cut(s) 1239
BspPI GGATC 4 cut(s) 464, 1086, 1099, 1271
BspTI CTTAAG 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 1029
BsrI ACTGG 3 cut(s) 414, 627, 1308
BssECI CCNNGG 2 cut(s) 136, 604
BssMI GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 3 cut(s) 137, 272, 371
Bst4CI ACNGT 4 cut(s) 347, 1142, 1192, 1203
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 173
BstAFI CTTAAG 1 cut(s) 421
BstAPI GCANNNNNTGC 2 cut(s) 533, 1295
BstC8I GCNNGC 3 cut(s) 268, 428, 1237
BstDEI CTNAG 5 cut(s) 71, 631, 692, 842, 1026
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 19, 115, 151, 614
BstFNI CGCG 2 cut(s) 183, 1174
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 6 cut(s) 328, 472, 745, 1094, 1254, 1266
BstMAI GTCTC 4 cut(s) 467, 726, 1029, 1181
BstMBI GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
BstMWI GCNNNNNNNGC 4 cut(s) 299, 533, 1295, 1334
BstNI CCWGG 3 cut(s) 137, 272, 371
BstSCI CCNGG 4 cut(s) 135, 270, 369, 811
BstSFI CTRYAG 2 cut(s) 771, 825
BstSLI GKGCMC 1 cut(s) 1085
BstUI CGCG 2 cut(s) 183, 1174
BstV1I GCAGC 2 cut(s) 536, 1315
BstV2I GAAGAC 2 cut(s) 176, 864
BstX2I RGATCY 3 cut(s) 325, 469, 1091
BstYI RGATCY 3 cut(s) 325, 469, 1091
Bsu15I ATCGAT 1 cut(s) 1124
Bsu36I CCTNAGG 1 cut(s) 842
BsuRI GGCC 2 cut(s) 135, 270
BsuTUI ATCGAT 1 cut(s) 1124
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 4 cut(s) 19, 115, 151, 614
BtsI GCAGTG 2 cut(s) 822, 1362
BtsIMutI CAGTG 4 cut(s) 822, 1034, 1199, 1362
BveI ACCTGC 3 cut(s) 518, 764, 898
Cac8I GCNNGC 3 cut(s) 268, 428, 1237
CaiI CAGNNNCTG 1 cut(s) 136
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 1124
CseI GACGC 2 cut(s) 181, 467
Csp6I GTAC 4 cut(s) 542, 1157, 1284, 1301
CviAII CATG 5 cut(s) 127, 290, 383, 512, 727
CviQI GTAC 4 cut(s) 542, 1157, 1284, 1301
DdeI CTNAG 5 cut(s) 71, 631, 692, 842, 1026
DpnI GATC 6 cut(s) 327, 471, 744, 1093, 1253, 1265
DpnII GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
DriI GACNNNNNGTC 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 341
Eam1105I GACNNNNNGTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 1029
Eco57I CTGAAG 1 cut(s) 282
Eco81I CCTNAGG 1 cut(s) 842
Eco88I CYCGRG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 3 cut(s) 135, 270, 369
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 5 cut(s) 130, 293, 386, 515, 730
FaqI GGGAC 1 cut(s) 380
FatI CATG 5 cut(s) 126, 289, 382, 511, 726
FauI CCCGC 1 cut(s) 1333
Fnu4HI GCNGC 2 cut(s) 525, 1329
FokI GGATG 4 cut(s) 26, 122, 158, 621
Fsp4HI GCNGC 2 cut(s) 525, 1329
FspBI CTAG 3 cut(s) 482, 1236, 1257
GlaI GCGC 1 cut(s) 7
GluI GCNGC 2 cut(s) 525, 1329
GsaI CCCAGC 3 cut(s) 59, 297, 478
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 135, 270
HapII CCGG 1 cut(s) 812
HgaI GACGC 2 cut(s) 181, 467
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 5 cut(s) 130, 293, 386, 515, 730
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 2 cut(s) 151, 407
HindII GTYRAC 2 cut(s) 151, 407
HinfI GANTC 9 cut(s) 350, 516, 578, 593, 642, 685, 696, 800, 1167
HpaI GTTAAC 1 cut(s) 151
HpaII CCGG 1 cut(s) 812
HphI GGTGA 3 cut(s) 737, 866, 1188
Hpy166II GTNNAC 4 cut(s) 151, 308, 407, 1083
Hpy188I TCNGA 7 cut(s) 34, 200, 701, 793, 1003, 1106, 1277
Hpy188III TCNNGA 9 cut(s) 260, 323, 329, 435, 575, 639, 1257, 1267, 1374
Hpy8I GTNNAC 4 cut(s) 151, 308, 407, 1083
HpyAV CCTTC 7 cut(s) 11, 152, 197, 376, 408, 865, 1082
HpyCH4III ACNGT 4 cut(s) 347, 1142, 1192, 1203
HpyCH4IV ACGT 2 cut(s) 460, 558
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 533, 1295, 1334
HpyF3I CTNAG 5 cut(s) 71, 631, 692, 842, 1026
HpySE526I ACGT 2 cut(s) 460, 558
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 5 cut(s) 130, 293, 386, 515, 730
HspAI GCGC 1 cut(s) 6
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
LmnI GCTCC 4 cut(s) 34, 299, 874, 1155
Lsp1109I GCAGC 2 cut(s) 536, 1315
LweI GCATC 3 cut(s) 100, 368, 1045
MaeI CTAG 3 cut(s) 482, 1236, 1257
MaeII ACGT 2 cut(s) 460, 558
MaeIII GTNAC 3 cut(s) 215, 820, 929
MalI GATC 6 cut(s) 327, 471, 744, 1093, 1253, 1265
MboI GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
MboII GAAGA 6 cut(s) 95, 178, 181, 328, 759, 869
MfeI CAATTG 2 cut(s) 780, 1293
MflI RGATCY 3 cut(s) 325, 469, 1091
MhlI GDGCHC 1 cut(s) 1085
MluCI AATT 3 cut(s) 617, 780, 1293
MlyI GAGTC 4 cut(s) 587, 651, 694, 1161
MnlI CCTC 9 cut(s) 73, 100, 136, 206, 344, 695, 799, 1225, 1253
MroXI GAANNNNTTC 1 cut(s) 953
MseI TTAA 5 cut(s) 117, 150, 231, 422, 866
MslI CAYNNNNRTG 2 cut(s) 710, 1247
MspA1I CMGCKG 1 cut(s) 1328
MspCI CTTAAG 1 cut(s) 421
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 4 cut(s) 137, 272, 371, 813
MunI CAATTG 2 cut(s) 780, 1293
Mva1269I GAATGC 1 cut(s) 1353
MvaI CCWGG 3 cut(s) 137, 272, 371
MvnI CGCG 2 cut(s) 183, 1174
MwoI GCNNNNNNNGC 4 cut(s) 299, 533, 1295, 1334
NciI CCSGG 1 cut(s) 813
NdeII GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
NheI GCTAGC 1 cut(s) 1235
NlaIII CATG 5 cut(s) 130, 293, 386, 515, 730
NlaIV GGNNCC 1 cut(s) 1093
NmuCI GTSAC 1 cut(s) 820
PaeR7I CTCGAG 1 cut(s) 435
PaqCI CACCTGC 3 cut(s) 518, 764, 898
PctI GAATGC 1 cut(s) 1353
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 5 cut(s) 350, 516, 578, 696, 800
PflMI CCANNNNNTGG 1 cut(s) 669
PfoI TCCNGGA 1 cut(s) 811
PkrI GCNGC 2 cut(s) 526, 1330
PleI GAGTC 4 cut(s) 587, 650, 693, 1161
PpsI GAGTC 4 cut(s) 587, 650, 693, 1161
Psp6I CCWGG 3 cut(s) 135, 270, 369
PspFI CCCAGC 3 cut(s) 55, 293, 474
PspGI CCWGG 3 cut(s) 135, 270, 369
PspN4I GGNNCC 1 cut(s) 1093
PspPI GGNCC 1 cut(s) 133
PstI CTGCAG 2 cut(s) 775, 829
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 3 cut(s) 325, 469, 1091
RsaI GTAC 4 cut(s) 543, 1158, 1285, 1302
RsaNI GTAC 4 cut(s) 542, 1157, 1284, 1301
RseI CAYNNNNRTG 2 cut(s) 710, 1247
SaqAI TTAA 5 cut(s) 117, 150, 231, 422, 866
SatI GCNGC 2 cut(s) 525, 1329
Sau3AI GATC 6 cut(s) 325, 469, 742, 1091, 1251, 1263
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 4 cut(s) 587, 651, 694, 1161
ScrFI CCNGG 4 cut(s) 137, 272, 371, 813
SduI GDGCHC 1 cut(s) 1085
SfaNI GCATC 3 cut(s) 100, 368, 1045
SfcI CTRYAG 2 cut(s) 771, 825
Sfr274I CTCGAG 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 435
SmiMI CAYNNNNRTG 2 cut(s) 710, 1247
SmlI CTYRAG 3 cut(s) 38, 421, 435
SmoI CTYRAG 3 cut(s) 38, 421, 435
Sse9I AATT 3 cut(s) 617, 780, 1293
SsiI CCGC 1 cut(s) 1326
SspMI CTAG 3 cut(s) 482, 1236, 1257
StyD4I CCNGG 4 cut(s) 135, 270, 369, 811
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 4 cut(s) 347, 1142, 1192, 1203
TaiI ACGT 2 cut(s) 463, 561
TaqI TCGA 7 cut(s) 78, 322, 436, 596, 1124, 1266, 1309
TasI AATT 3 cut(s) 617, 780, 1293
TatI WGTACW 3 cut(s) 1156, 1283, 1300
TfiI GAWTC 5 cut(s) 350, 516, 578, 696, 800
Tru1I TTAA 5 cut(s) 117, 150, 231, 422, 866
Tru9I TTAA 5 cut(s) 117, 150, 231, 422, 866
TscAI CASTG 4 cut(s) 829, 1034, 1206, 1369
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 2 cut(s) 524, 1328
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 4 cut(s) 30, 504, 669, 956
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 4 cut(s) 829, 1034, 1206, 1369
Van91I CCANNNNNTGG 1 cut(s) 669
Vha464I CTTAAG 1 cut(s) 421
VneI GTGCAC 1 cut(s) 1081
XagI CCTNNNNNAGG 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 1256
XhoI CTCGAG 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 3 cut(s) 482, 1236, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.