Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009045

Physical Location & Seq

Genomic Coordinates Forward (+)

2563803 .. 2566042

Gene Structure 2240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGGTTCCCAAAGCCATTATTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTCGGAGCTCCTGCTTCTGAAGGTTATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGAAGAAAACAGTTCTACTAGGCAAAAACGCCTTGCCCGAATGGGAAACCACCGGTTTCGTCGAGTACATCGCCGGCGGTCCTCAGCCAGGAGGCATGTACTTCCCAGTGGCTCATGGAGTCCACGCCGTGAGGCTCGGAAACGAAGCTACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTTCTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAAGTTCTTAGAGTCTCTGTACCTTCTCAGTCCGGTGACTTGCCACTTCAAACACTTTACAACAGTTTCGGAGGTGACGTGTACGCTTGGGCCTTCGTCGCCAAGACTTCTCAAGTTACTGTGACTTTCCACAATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAGAGCTTGTTCATCCAATCTACACCAGAGGGAACTTGGTGAAGAATGGAGGGTTCGAAGAAGGTCCTCACCGTCTAGTGAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATCTCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACTCTAAGTACTTTAATGTCCCCTTTGGACATGCTGCGATCGAGCTAGTTGCAGGCAAAGAAAGTGCCATTGCACAAGTCATTAGAACCTCTCCTGGTCAAACTTACACCCTCTCCTTCGTCGTTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCAGAGATACACTCAAAGTACCACACACTTCCGTTGGTGGAGGTCATGTCAAGACCGCGAGTTTCAAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACCAAGAAGACTGATACTGTATCTTTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCATGTCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

365

Amino Acids

39.07

Weight (kDa)

7.17

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF642	PF04862	1 - 141	1.4e-58	Protein of unknown function (DUF642)
DUF642	PF04862	153 - 319	1.1e-15	Protein of unknown function (DUF642)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08030 AT3G08030
fragaria_vesca	FvH4_7g01370 FvH4_7g01370 FvH4_7g01370 FvH4_7g01370
malus_domestica	MD02G1307700.v1.1
prunus_persica	Prupe.2G017800_v2.0.a1 Prupe.2G017800_v2.0.a1
pyrus_communis	pycom02g25890 pycom07g01380
rosa_chinensis	RchiOBHm_Chr1g0317061
rosa_laevigata	RLG00000030629
rosa_multiflora	Rmu_co8457401.1_g000001 Rmu_sc0018727.1_g000004
rosa_roxburghii	Rroxscaffold_4G00330690
rosa_rugosa	Rorug01G0014200
rosa_samantha	Rh1AG025300 Rh1BG022100 Rh1CG023700 Rh1DG022500
rosa_wichuraiana	Rw1G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	962
AciI	CCGC	4 cut(s)	5, 204, 960, 980
AclWI	GGATC	2 cut(s)	503, 701
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	2 cut(s)	96, 994
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	6 cut(s)	194, 227, 378, 440, 737, 924
AfiI	CCNNNNNNNGG	3 cut(s)	215, 518, 686
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	5 cut(s)	407, 503, 893, 970, 976
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	5 cut(s)	214, 304, 493, 685, 820
AluBI	AGCT	5 cut(s)	65, 275, 553, 772, 896
AluI	AGCT	5 cut(s)	65, 275, 553, 772, 896
Alw21I	GWGCWC	2 cut(s)	67, 352
Alw26I	GTCTC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	503, 701
AoxI	GGCC	1 cut(s)	447
ApaLI	GTGCAC	1 cut(s)	348
ApeKI	GCWGC	3 cut(s)	53, 761, 902
ApoI	RAATTY	1 cut(s)	719
AsiGI	ACCGGT	1 cut(s)	179
AspS9I	GGNCC	5 cut(s)	206, 447, 521, 611, 1058
AsuHPI	GGTGA	6 cut(s)	102, 404, 443, 598, 608, 669
AsuII	TTCGAA	2 cut(s)	102, 603
AvaII	GGWCC	4 cut(s)	206, 521, 611, 1058
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	1040
Bbv12I	GWGCWC	2 cut(s)	67, 352
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	40, 748, 914
BccI	CCATC	1 cut(s)	880
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	5 cut(s)	216, 306, 495, 687, 822
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	4 cut(s)	146, 623, 773, 996
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	3 cut(s)	54, 762, 903
BlsI	GCNGC	3 cut(s)	55, 763, 904
BmcAI	AGTACT	1 cut(s)	737
Bme1390I	CCNGG	5 cut(s)	216, 306, 495, 687, 822
Bme18I	GGWCC	4 cut(s)	206, 521, 611, 1058
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	5 cut(s)	206, 447, 521, 611, 1058
BmiI	GGNNCC	2 cut(s)	9, 880
BmrFI	CCNGG	5 cut(s)	216, 306, 495, 687, 822
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	847
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	1040
BplI	GAGNNNNNCTC	4 cut(s)	633, 665, 900, 932
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	2 cut(s)	102, 603
BpuEI	CTTGAG	2 cut(s)	453, 692
BsaJI	CCNNGG	1 cut(s)	874
BsaWI	WCCGGW	2 cut(s)	179, 389
BsaXI	ACNNNNNCTCC	6 cut(s)	420, 450, 824, 854, 936, 966
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 518, 686
Bse118I	RCCGGY	2 cut(s)	179, 200
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	5 cut(s)	216, 306, 495, 687, 822
BseDI	CCNNGG	1 cut(s)	874
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	3 cut(s)	215, 518, 686
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	3 cut(s)	224, 299, 398
BseNI	ACTGG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	40, 748, 914
Bsh1236I	CGCG	1 cut(s)	962
Bsh1285I	CGRYCG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	449
BshTI	ACCGGT	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	768
BsiHKAI	GWGCWC	2 cut(s)	67, 352
BsiSI	CCGG	3 cut(s)	180, 201, 390
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	3 cut(s)	215, 518, 686
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	731
BsnI	GGCC	1 cut(s)	449
Bsp119I	TTCGAA	2 cut(s)	102, 603
Bsp1286I	GDGCHC	2 cut(s)	67, 352
Bsp143I	GATC	4 cut(s)	508, 667, 693, 765
Bsp19I	CCATGG	1 cut(s)	874
BspACI	CCGC	4 cut(s)	5, 204, 960, 980
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	3 cut(s)	223, 298, 397
BspFNI	CGCG	1 cut(s)	962
BspLI	GGNNCC	2 cut(s)	9, 880
BspPI	GGATC	2 cut(s)	503, 701
BspT104I	TTCGAA	2 cut(s)	102, 603
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	2 cut(s)	179, 200
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	2 cut(s)	179, 200
BssECI	CCNNGG	1 cut(s)	874
BssMI	GATC	4 cut(s)	508, 667, 693, 765
BssT1I	CCWWGG	1 cut(s)	874
Bst2UI	CCWGG	5 cut(s)	216, 306, 495, 687, 822
Bst4CI	ACNGT	5 cut(s)	139, 422, 478, 620, 1045
Bst6I	CTCTTC	1 cut(s)	99
BstBI	TTCGAA	2 cut(s)	102, 603
BstC8I	GCNNGC	2 cut(s)	202, 781
BstDEI	CTNAG	7 cut(s)	210, 285, 365, 384, 732, 861, 1095
BstDSI	CCRYGG	1 cut(s)	874
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	962
BstKTI	GATC	4 cut(s)	511, 670, 696, 768
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	4 cut(s)	508, 667, 693, 765
BstMCI	CGRYCG	1 cut(s)	768
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 455, 902, 986
BstNI	CCWGG	5 cut(s)	216, 306, 495, 687, 822
BstNSI	RCATGY	2 cut(s)	226, 761
BstSCI	CCNGG	5 cut(s)	214, 304, 493, 685, 820
BstSLI	GKGCMC	1 cut(s)	352
BstUI	CGCG	1 cut(s)	962
BstV1I	GCAGC	3 cut(s)	40, 748, 914
BstV2I	GAAGAC	1 cut(s)	1040
BstX2I	RGATCY	2 cut(s)	508, 667
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	2 cut(s)	508, 667
BsuRI	GGCC	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	874
BtgZI	GCGATG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	3 cut(s)	240, 720, 1018
Cac8I	GCNNGC	2 cut(s)	202, 781
Cfr10I	RCCGGY	2 cut(s)	179, 200
Cfr13I	GGNCC	5 cut(s)	206, 447, 521, 611, 1058
CseI	GACGC	2 cut(s)	324, 542
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	6 cut(s)	193, 226, 377, 439, 736, 923
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	8 cut(s)	127, 223, 242, 758, 875, 883, 950, 1088
CviQI	GTAC	6 cut(s)	193, 226, 377, 439, 736, 923
DdeI	CTNAG	7 cut(s)	210, 285, 365, 384, 732, 861, 1095
DpnI	GATC	4 cut(s)	510, 669, 695, 767
DpnII	GATC	4 cut(s)	508, 667, 693, 765
DraIII	CACNNNGTG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	4 cut(s)	206, 521, 611, 1058
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	2 cut(s)	96, 994
EcoICRI	GAGCTC	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	5 cut(s)	214, 304, 493, 685, 820
EcoT14I	CCWWGG	1 cut(s)	874
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	874
FaeI	CATG	8 cut(s)	130, 226, 245, 761, 878, 886, 953, 1091
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	8 cut(s)	126, 222, 241, 757, 874, 882, 949, 1087
Fnu4HI	GCNGC	3 cut(s)	54, 762, 903
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	3 cut(s)	54, 762, 903
FspBI	CTAG	4 cut(s)	146, 623, 773, 996
GluI	GCNGC	3 cut(s)	54, 762, 903
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	3 cut(s)	180, 201, 390
HgaI	GACGC	2 cut(s)	324, 542
Hin1II	CATG	8 cut(s)	130, 226, 245, 761, 878, 886, 953, 1091
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	6 cut(s)	107, 246, 369, 642, 701, 728
HpaII	CCGG	3 cut(s)	180, 201, 390
HphI	GGTGA	6 cut(s)	102, 404, 443, 598, 608, 669
Hpy166II	GTNNAC	4 cut(s)	250, 350, 439, 628
Hpy188I	TCNGA	5 cut(s)	62, 76, 266, 288, 428
Hpy188III	TCNNGA	3 cut(s)	339, 503, 955
Hpy8I	GTNNAC	4 cut(s)	250, 350, 439, 628
Hpy99I	CGWCG	4 cut(s)	191, 340, 458, 851
HpyAV	CCTTC	5 cut(s)	71, 390, 460, 602, 853
HpyCH4III	ACNGT	5 cut(s)	139, 422, 478, 620, 1045
HpyCH4IV	ACGT	2 cut(s)	326, 435
HpyCH4V	TGCA	4 cut(s)	350, 779, 800, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 455, 902, 986
HpyF3I	CTNAG	7 cut(s)	210, 285, 365, 384, 732, 861, 1095
HpySE526I	ACGT	2 cut(s)	326, 435
Hsp92II	CATG	8 cut(s)	130, 226, 245, 761, 878, 886, 953, 1091
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	508, 667, 693, 765
LmnI	GCTCC	2 cut(s)	62, 70
Lsp1109I	GCAGC	3 cut(s)	40, 748, 914
LweI	GCATC	1 cut(s)	847
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	4 cut(s)	146, 623, 773, 996
MaeII	ACGT	2 cut(s)	326, 435
MaeIII	GTNAC	6 cut(s)	108, 392, 431, 472, 478, 702
MalI	GATC	4 cut(s)	510, 669, 695, 767
MboI	GATC	4 cut(s)	508, 667, 693, 765
MboII	GAAGA	9 cut(s)	77, 116, 142, 518, 601, 617, 677, 1000, 1045
MflI	RGATCY	2 cut(s)	508, 667
MhlI	GDGCHC	2 cut(s)	67, 352
MluCI	AATT	2 cut(s)	719, 999
MlyI	GAGTC	6 cut(s)	116, 255, 378, 651, 710, 722
MmeI	TCCRAC	3 cut(s)	510, 671, 832
MreI	CGCCGGCG	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	200
MseI	TTAA	2 cut(s)	546, 741
MspI	CCGG	3 cut(s)	180, 201, 390
MspR9I	CCNGG	5 cut(s)	216, 306, 495, 687, 822
MvaI	CCWGG	5 cut(s)	216, 306, 495, 687, 822
MvnI	CGCG	1 cut(s)	962
MwoI	GCNNNNNNNGC	4 cut(s)	62, 455, 902, 986
NaeI	GCCGGC	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	874
NdeII	GATC	4 cut(s)	508, 667, 693, 765
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	8 cut(s)	130, 226, 245, 761, 878, 886, 953, 1091
NlaIV	GGNNCC	2 cut(s)	9, 880
NmuCI	GTSAC	5 cut(s)	108, 392, 431, 478, 702
NspI	RCATGY	2 cut(s)	226, 761
NspV	TTCGAA	2 cut(s)	102, 603
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 332, 432
PdiI	GCCGGC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	55, 763, 904
Ple19I	CGATCG	1 cut(s)	768
PleI	GAGTC	6 cut(s)	115, 254, 377, 650, 709, 722
PpsI	GAGTC	6 cut(s)	115, 254, 377, 650, 709, 722
PpuMI	RGGWCCY	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	5 cut(s)	214, 304, 493, 685, 820
PspGI	CCWGG	5 cut(s)	214, 304, 493, 685, 820
PspN4I	GGNNCC	2 cut(s)	9, 880
PspPI	GGNCC	5 cut(s)	206, 447, 521, 611, 1058
PspPPI	RGGWCCY	1 cut(s)	611
PsrI	GAACNNNNNNTAC	2 cut(s)	985, 1017
PsuI	RGATCY	2 cut(s)	508, 667
PsyI	GACNNNGTC	1 cut(s)	536
PvuI	CGATCG	1 cut(s)	768
RsaI	GTAC	6 cut(s)	194, 227, 378, 440, 737, 924
RsaNI	GTAC	6 cut(s)	193, 226, 377, 439, 736, 923
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	546, 741
SatI	GCNGC	3 cut(s)	54, 762, 903
Sau3AI	GATC	4 cut(s)	508, 667, 693, 765
Sau96I	GGNCC	5 cut(s)	206, 447, 521, 611, 1058
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	6 cut(s)	116, 255, 378, 651, 710, 722
ScrFI	CCNGG	5 cut(s)	216, 306, 495, 687, 822
SduI	GDGCHC	2 cut(s)	67, 352
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	847
SfuI	TTCGAA	2 cut(s)	102, 603
SgrAI	CRCCGGYG	1 cut(s)	200
SinI	GGWCC	4 cut(s)	206, 521, 611, 1058
SmlI	CTYRAG	2 cut(s)	468, 707
SmoI	CTYRAG	2 cut(s)	468, 707
Sse9I	AATT	2 cut(s)	719, 999
SsiI	CCGC	4 cut(s)	5, 204, 960, 980
SspMI	CTAG	4 cut(s)	146, 623, 773, 996
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	5 cut(s)	214, 304, 493, 685, 820
StyI	CCWWGG	1 cut(s)	874
TaaI	ACNGT	5 cut(s)	139, 422, 478, 620, 1045
TaiI	ACGT	2 cut(s)	329, 438
TaqI	TCGA	5 cut(s)	102, 189, 338, 603, 768
TasI	AATT	2 cut(s)	719, 999
TatI	WGTACW	3 cut(s)	192, 225, 735
Tru1I	TTAA	2 cut(s)	546, 741
Tru9I	TTAA	2 cut(s)	546, 741
TscAI	CASTG	3 cut(s)	240, 720, 1018
TseFI	GTSAC	5 cut(s)	108, 392, 431, 478, 702
TseI	GCWGC	3 cut(s)	53, 761, 902
Tsp45I	GTSAC	5 cut(s)	108, 392, 431, 478, 702
TspDTI	ATGAA	3 cut(s)	143, 548, 712
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	3 cut(s)	240, 720, 1018
Tth111I	GACNNNGTC	1 cut(s)	536
VneI	GTGCAC	1 cut(s)	348
VpaK11BI	GGWCC	4 cut(s)	206, 521, 611, 1058
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	2 cut(s)	226, 761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XspI	CTAG	4 cut(s)	146, 623, 773, 996
ZrmI	AGTACT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.