Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009045

Physical Location & Seq

Genomic Coordinates Forward (+)

64411894 .. 64414407

Gene Structure 2514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTCTGCTGCTAGTCTCTTTTATACTTGCTCTCTCCTTCATCTCCACTAGTCCTGCCTTTGCAGTTGCACCTAGGCCTCTTGAAGGACTCTTGGACAATGGAAATTTTGAAGAACCACCAAAACGAAGCAACCTCAAGAAAACAGTACTCATAGGCAAAAATGCACTGCCCAAATGGGAAATCAATGGCTTGGTGGAGTACATCTCCGGCGGGCCTCAACCAGGCGGCATGTACTTTCCTGTAGCTCATGGTGTCCATGCAGTTAGGCTTGGCAATGAGGCCTCAATCTCTCAGACCATAAAGGTCAAACCAGGGTCTCTGTATGCCCTAACATTTGGGGCATCAAGAACTTGTGCACAAGAAGAGGTTTTGAGAGTATCAGTGCCTCCTCAGGCAGGTGACCTTCCTTTGCAGACTCTATACAGCAGTAATGGAGGTGATACTTATGCTTGGGGATTCAAAGCCACTTCTAACACGGCTAAAGTGACTTTCCACAATCCTGGAATTCAAGAAGACCCTGCTTGCGGTCCACTCTTGGATGCAATTGCTATCAAGGAGCTTTTCCCTGCACTGCCCACTAGAGGTAACCTGGTCAGAAATCCTGGGTTTGAGGAGGGACCCCATAGGCTAATCAACTCTTCCCATGGTGTACTTCTTCCTCCGAAACAACTAGATGCAACATCCCCACTTCCTGGCTGGATCATCGAGTCCCTTAAGGCCGTAAAGTTCATTGATGCCAAGCACTTTAATGTCCCATTTGGAAAAGCTGCAGTTGAGCTTGTTGCTGGGAGAGAGAGTGCTATTGCCCAGATTCTTAGAACCGTTCCCAACAAGCTCTACAGTCTCTCATTCACTGTCGGTGATGCAAGGAACGGCTGCCACGGATCAATGATGGTCGAAGCATTTGCAGGCAAGGATACCTTGAAAGTTCCTTTCAACTCTCAAGGAAAAGGCGGTTTCAAGGCTGCAAGTTTCAAGTTCAAAGCAGCTTCATTCAGGACCAGAATTACATTCTTCAGTTCTTTCTACCACACCAGGACTGATGACTATGGTGCTCTTTGCGGACCCATCCTGGATGAAGTTCGGGTTTCTCCTATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

368

Amino Acids

39.48

Weight (kDa)

9.24

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF642	PF04862	30 - 186	4.3e-68	Protein of unknown function (DUF642)
DUF642	PF04862	198 - 364	3e-14	Protein of unknown function (DUF642)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08030 AT3G08030
fragaria_vesca	FvH4_7g01370 FvH4_7g01370 FvH4_7g01370 FvH4_7g01370
malus_domestica	MD02G1307700.v1.1
prunus_persica	Prupe.2G017800_v2.0.a1 Prupe.2G017800_v2.0.a1
pyrus_communis	pycom02g25890 pycom07g01380
rosa_chinensis	RchiOBHm_Chr1g0317061
rosa_laevigata	RLG00000030629
rosa_multiflora	Rmu_co8457401.1_g000001 Rmu_sc0018727.1_g000004
rosa_roxburghii	Rroxscaffold_4G00330690
rosa_rugosa	Rorug01G0014200
rosa_samantha	Rh1AG025300 Rh1BG022100 Rh1CG023700 Rh1DG022500
rosa_wichuraiana	Rw1G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	695
AciI	CCGC	5 cut(s)	213, 228, 528, 957, 1065
AclWI	GGATC	2 cut(s)	710, 895
AcsI	RAATTY	2 cut(s)	106, 507
AcuI	CTGAAG	1 cut(s)	1003
AfaI	GTAC	4 cut(s)	150, 203, 236, 654
AfiI	CCNNNNNNNGG	6 cut(s)	86, 224, 398, 527, 584, 695
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	9 cut(s)	86, 113, 463, 512, 928, 940, 964, 979, 985
AhlI	ACTAGT	1 cut(s)	50
AjnI	CCWGG	8 cut(s)	223, 313, 502, 591, 604, 694, 1037, 1074
AluBI	AGCT	6 cut(s)	248, 562, 770, 781, 838, 992
AluI	AGCT	6 cut(s)	248, 562, 770, 781, 838, 992
Alw21I	GWGCWC	2 cut(s)	361, 1060
Alw26I	GTCTC	3 cut(s)	22, 324, 851
Alw44I	GTGCAC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	710, 895
AoxI	GGCC	4 cut(s)	77, 215, 282, 720
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	5 cut(s)	10, 770, 879, 968, 989
ApoI	RAATTY	2 cut(s)	106, 507
AspA2I	CCTAGG	1 cut(s)	74
AspS9I	GGNCC	5 cut(s)	215, 530, 620, 1002, 1067
AsuHPI	GGTGA	3 cut(s)	413, 452, 875
AvaII	GGWCC	4 cut(s)	530, 620, 1002, 1067
AvrII	CCTAGG	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	2 cut(s)	361, 1060
BbvI	GCAGC	4 cut(s)	757, 866, 955, 1001
BccI	CCATC	2 cut(s)	889, 1079
BceAI	ACGGC	3 cut(s)	495, 707, 892
BcgI	CGANNNNNNTGC	2 cut(s)	890, 924
BciT130I	CCWGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
BciVI	GTATCC	1 cut(s)	913
BcoDI	GTCTC	3 cut(s)	22, 324, 851
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	5 cut(s)	14, 51, 75, 582, 674
BfmI	CTRYAG	3 cut(s)	243, 771, 841
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	913
BisI	GCNGC	6 cut(s)	11, 229, 771, 880, 969, 990
BlnI	CCTAGG	1 cut(s)	74
BlsI	GCNGC	6 cut(s)	12, 230, 772, 881, 970, 991
BmcAI	AGTACT	1 cut(s)	150
Bme1390I	CCNGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
Bme18I	GGWCC	4 cut(s)	530, 620, 1002, 1067
BmgT120I	GGNCC	5 cut(s)	215, 530, 620, 1002, 1067
BmiI	GGNNCC	3 cut(s)	621, 622, 1069
BmrFI	CCNGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
BmsI	GCATC	5 cut(s)	353, 532, 667, 727, 856
BpiI	GAAGAC	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpuEI	CTTGAG	2 cut(s)	122, 930
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	5 cut(s)	74, 314, 605, 646, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	6 cut(s)	86, 224, 398, 527, 584, 695
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	283
BseBI	CCWGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
BseDI	CCNNGG	5 cut(s)	74, 314, 605, 646, 883
BseGI	GGATG	4 cut(s)	547, 683, 1071, 1084
BseLI	CCNNNNNNNGG	6 cut(s)	86, 224, 398, 527, 584, 695
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	308, 407
BseRI	GAGGAG	2 cut(s)	381, 629
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	4 cut(s)	757, 866, 955, 1001
BseYI	CCCAGC	1 cut(s)	788
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	4 cut(s)	79, 217, 284, 722
BsiHKAI	GWGCWC	2 cut(s)	361, 1060
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	3 cut(s)	633, 697, 740
BslI	CCNNNNNNNGG	6 cut(s)	86, 224, 398, 527, 584, 695
BsmAI	GTCTC	3 cut(s)	22, 324, 851
BsmFI	GGGAC	3 cut(s)	633, 697, 740
BsnI	GGCC	4 cut(s)	79, 217, 284, 722
Bso31I	GGTCTC	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	361, 1060
Bsp143I	GATC	2 cut(s)	702, 887
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	5 cut(s)	213, 228, 528, 957, 1065
BspANI	GGCC	4 cut(s)	79, 217, 284, 722
BspCNI	CTCAG	2 cut(s)	307, 406
BspLI	GGNNCC	3 cut(s)	621, 622, 1069
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	710, 895
BspTI	CTTAAG	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	283
BssECI	CCNNGG	5 cut(s)	74, 314, 605, 646, 883
BssMI	GATC	2 cut(s)	702, 887
BssT1I	CCWWGG	2 cut(s)	74, 646
Bst2UI	CCWGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
Bst4CI	ACNGT	4 cut(s)	148, 826, 845, 859
Bst6I	CTCTTC	2 cut(s)	360, 646
BstAFI	CTTAAG	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	215, 526, 913
BstDEI	CTNAG	4 cut(s)	294, 393, 818, 1104
BstDSI	CCRYGG	2 cut(s)	646, 883
BstEII	GGTNACC	2 cut(s)	401, 587
BstENI	CCTNNNNNAGG	3 cut(s)	84, 222, 396
BstF5I	GGATG	4 cut(s)	547, 683, 1071, 1084
BstKTI	GATC	2 cut(s)	705, 890
BstMAI	GTCTC	3 cut(s)	22, 324, 851
BstMBI	GATC	2 cut(s)	702, 887
BstNI	CCWGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
BstNSI	RCATGY	1 cut(s)	235
BstPI	GGTNACC	2 cut(s)	401, 587
BstSCI	CCNGG	8 cut(s)	223, 313, 502, 591, 604, 694, 1037, 1074
BstSFI	CTRYAG	3 cut(s)	243, 771, 841
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	4 cut(s)	757, 866, 955, 1001
BstV2I	GAAGAC	1 cut(s)	522
BstXI	CCANNNNNNTGG	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	4 cut(s)	79, 217, 284, 722
BtgI	CCRYGG	2 cut(s)	646, 883
BtsCI	GGATG	4 cut(s)	547, 683, 1071, 1084
BtsI	GCAGTG	2 cut(s)	167, 572
BtsIMutI	CAGTG	4 cut(s)	167, 390, 572, 855
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	3 cut(s)	215, 526, 913
Cfr13I	GGNCC	5 cut(s)	215, 530, 620, 1002, 1067
CsiI	ACCWGGT	1 cut(s)	591
Csp6I	GTAC	4 cut(s)	149, 202, 235, 653
CviAII	CATG	4 cut(s)	232, 251, 260, 647
CviQI	GTAC	4 cut(s)	149, 202, 235, 653
DdeI	CTNAG	4 cut(s)	294, 393, 818, 1104
DpnI	GATC	2 cut(s)	704, 889
DpnII	GATC	2 cut(s)	702, 887
Eam1104I	CTCTTC	2 cut(s)	360, 646
EarI	CTCTTC	2 cut(s)	360, 646
Eco130I	CCWWGG	2 cut(s)	74, 646
Eco147I	AGGCCT	2 cut(s)	79, 284
Eco31I	GGTCTC	1 cut(s)	324
Eco47I	GGWCC	4 cut(s)	530, 620, 1002, 1067
Eco57I	CTGAAG	1 cut(s)	1003
Eco81I	CCTNAGG	1 cut(s)	393
Eco91I	GGTNACC	2 cut(s)	401, 587
EcoNI	CCTNNNNNAGG	3 cut(s)	84, 222, 396
EcoO109I	RGGNCCY	1 cut(s)	620
EcoO65I	GGTNACC	2 cut(s)	401, 587
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	8 cut(s)	223, 313, 502, 591, 604, 694, 1037, 1074
EcoT14I	CCWWGG	2 cut(s)	74, 646
ErhI	CCWWGG	2 cut(s)	74, 646
FaeI	CATG	4 cut(s)	235, 254, 263, 650
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FaqI	GGGAC	3 cut(s)	633, 697, 740
FatI	CATG	4 cut(s)	231, 250, 259, 646
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	6 cut(s)	11, 229, 771, 880, 969, 990
FokI	GGATG	4 cut(s)	554, 670, 1058, 1091
Fsp4HI	GCNGC	6 cut(s)	11, 229, 771, 880, 969, 990
FspBI	CTAG	5 cut(s)	14, 51, 75, 582, 674
GluI	GCNGC	6 cut(s)	11, 229, 771, 880, 969, 990
GsaI	CCCAGC	1 cut(s)	792
HaeIII	GGCC	4 cut(s)	79, 217, 284, 722
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	4 cut(s)	235, 254, 263, 650
HinfI	GANTC	5 cut(s)	90, 418, 459, 710, 814
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	3 cut(s)	413, 452, 875
Hpy166II	GTNNAC	3 cut(s)	359, 533, 653
Hpy188I	TCNGA	3 cut(s)	297, 599, 666
Hpy188III	TCNNGA	5 cut(s)	83, 139, 348, 512, 1000
Hpy8I	GTNNAC	3 cut(s)	359, 533, 653
HpyAV	CCTTC	3 cut(s)	49, 80, 416
HpyCH4III	ACNGT	4 cut(s)	148, 826, 845, 859
HpyF3I	CTNAG	4 cut(s)	294, 393, 818, 1104
Hsp92II	CATG	4 cut(s)	235, 254, 263, 650
KflI	GGGWCCC	1 cut(s)	620
Kzo9I	GATC	2 cut(s)	702, 887
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	4 cut(s)	757, 866, 955, 1001
LweI	GCATC	5 cut(s)	353, 532, 667, 727, 856
MabI	ACCWGGT	1 cut(s)	591
MaeI	CTAG	5 cut(s)	14, 51, 75, 582, 674
MaeIII	GTNAC	3 cut(s)	401, 487, 587
MalI	GATC	2 cut(s)	704, 889
MboI	GATC	2 cut(s)	702, 887
MboII	GAAGA	6 cut(s)	125, 377, 527, 633, 650, 1009
MfeI	CAATTG	1 cut(s)	546
MhlI	GDGCHC	2 cut(s)	361, 1060
MluCI	AATT	4 cut(s)	106, 507, 546, 1008
MlyI	GAGTC	3 cut(s)	84, 412, 719
MseI	TTAA	2 cut(s)	717, 750
MslI	CAYNNNNRTG	1 cut(s)	750
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	2 cut(s)	702, 887
NlaIII	CATG	4 cut(s)	235, 254, 263, 650
NlaIV	GGNNCC	3 cut(s)	621, 622, 1069
NmuCI	GTSAC	2 cut(s)	401, 487
NspI	RCATGY	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	389
PceI	AGGCCT	2 cut(s)	79, 284
PfeI	GAWTC	2 cut(s)	459, 814
PflMI	CCANNNNNTGG	1 cut(s)	695
PfoI	TCCNGGA	2 cut(s)	502, 1074
PkrI	GCNGC	6 cut(s)	12, 230, 772, 881, 970, 991
PleI	GAGTC	3 cut(s)	84, 412, 718
PpsI	GAGTC	3 cut(s)	84, 412, 718
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	8 cut(s)	223, 313, 502, 591, 604, 694, 1037, 1074
PspEI	GGTNACC	2 cut(s)	401, 587
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	8 cut(s)	223, 313, 502, 591, 604, 694, 1037, 1074
PspN4I	GGNNCC	3 cut(s)	621, 622, 1069
PspPI	GGNCC	5 cut(s)	215, 530, 620, 1002, 1067
PspPPI	RGGWCCY	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	775
RsaI	GTAC	4 cut(s)	150, 203, 236, 654
RsaNI	GTAC	4 cut(s)	149, 202, 235, 653
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	2 cut(s)	717, 750
SatI	GCNGC	6 cut(s)	11, 229, 771, 880, 969, 990
Sau3AI	GATC	2 cut(s)	702, 887
Sau96I	GGNCC	5 cut(s)	215, 530, 620, 1002, 1067
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	3 cut(s)	84, 412, 719
ScrFI	CCNGG	8 cut(s)	225, 315, 504, 593, 606, 696, 1039, 1076
SduI	GDGCHC	2 cut(s)	361, 1060
SexAI	ACCWGGT	1 cut(s)	591
SfaNI	GCATC	5 cut(s)	353, 532, 667, 727, 856
SfcI	CTRYAG	3 cut(s)	243, 771, 841
SinI	GGWCC	4 cut(s)	530, 620, 1002, 1067
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	3 cut(s)	137, 716, 945
SmoI	CTYRAG	3 cut(s)	137, 716, 945
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	4 cut(s)	106, 507, 546, 1008
SseBI	AGGCCT	2 cut(s)	79, 284
SsiI	CCGC	5 cut(s)	213, 228, 528, 957, 1065
SspMI	CTAG	5 cut(s)	14, 51, 75, 582, 674
StuI	AGGCCT	2 cut(s)	79, 284
StyD4I	CCNGG	8 cut(s)	223, 313, 502, 591, 604, 694, 1037, 1074
StyI	CCWWGG	2 cut(s)	74, 646
TaaI	ACNGT	4 cut(s)	148, 826, 845, 859
TaqI	TCGA	2 cut(s)	708, 900
TasI	AATT	4 cut(s)	106, 507, 546, 1008
TatI	WGTACW	4 cut(s)	148, 201, 234, 652
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	459, 814
Tru1I	TTAA	2 cut(s)	717, 750
Tru9I	TTAA	2 cut(s)	717, 750
TscAI	CASTG	4 cut(s)	174, 390, 579, 862
TseFI	GTSAC	2 cut(s)	401, 487
TseI	GCWGC	5 cut(s)	10, 770, 879, 968, 989
Tsp45I	GTSAC	2 cut(s)	401, 487
TspDTI	ATGAA	4 cut(s)	31, 721, 984, 1095
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	4 cut(s)	174, 390, 579, 862
Van91I	CCANNNNNTGG	1 cut(s)	695
Vha464I	CTTAAG	1 cut(s)	716
VneI	GTGCAC	1 cut(s)	357
VpaK11BI	GGWCC	4 cut(s)	530, 620, 1002, 1067
XagI	CCTNNNNNAGG	3 cut(s)	84, 222, 396
XapI	RAATTY	2 cut(s)	106, 507
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	696
XmaJI	CCTAGG	1 cut(s)	74
XspI	CTAG	5 cut(s)	14, 51, 75, 582, 674
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.