Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009045

Physical Location & Seq

Genomic Coordinates Reverse (-)

3460443 .. 3465000

Gene Structure 4558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTACTTTCCTGTAGCTCATGGTGTCCATGCAGTTAGGCTTGGCAATGAGGCCTCAATCTCTCAGACCATAAAGGTCAAACCAGGGTCTCTGTATGCCCTAACATTTGGGGCATCGAGGACGTGTGCACAAGAAGAGGTTTTGAGAGTATCAGTGCCTCCTCAGGCAGGAGACCTTCCTTTACAGACTCTATACAGCAGTAATGGAGGTGATACTTATGCTTGGGGATTCAGAGCCACTTCTAACACGGCTAAAGTGACTTTCCACAATCCTGGAATTCAAGAAGACCCTGCTTGCGGTCCACTCTTGGATGCAATTGCTATCAAGGAGCTTCTCCCTGCACTGCCCACTAGAGGTAACCTGGTCAGAAATCCTGGGTTTGAGGAGGGACCCCATAGGCTATTCAACTCTTCCCATGGTGTACTTCTTCCTCCGAAACAACTAGATGCAACATCCCCACTTCCTGGCTGGATCATCGAGTCCCTCAAAGCCGTAAAGTTCATTGATGCCAAGCACTTTAATGTCCCATTTGGAAAAGCTGCAGTTGAGCTTGTTGCTGGGAGAGAGAGTGCTATTGCCCAGATTCTTAGAACAGTTCCCAACAAGCTCTACAGTCTCTCATTCACTGTCGGTGACGCAAGGAACGGCTGCCACGGATCAATGATGGTCGAAGCATTTGCAGGCAAGGATACCTTGAAAGTTCCTTTCAACTCTCAAGGAAAAGGCGGTTTCAAGGCTGCCAGTTTCAAGTTCAAAGCAGCTTCATTCAGAACCAGAATTACATTCTTCAGTTCTTTCTACCACACCCGGACTGATGACTATGGTGCTCTTTGCGGACCCATCCTAGATGAAGTTCGGGTTTCTCCTATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

291

Amino Acids

31.32

Weight (kDa)

9.24

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF642	PF04862	1 - 109	7.6e-45	Protein of unknown function (DUF642)
DUF642	PF04862	121 - 287	1.5e-14	Protein of unknown function (DUF642)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08030 AT3G08030
fragaria_vesca	FvH4_7g01370 FvH4_7g01370 FvH4_7g01370 FvH4_7g01370
malus_domestica	MD02G1307700.v1.1
prunus_persica	Prupe.2G017800_v2.0.a1 Prupe.2G017800_v2.0.a1
pyrus_communis	pycom02g25890 pycom07g01380
rosa_chinensis	RchiOBHm_Chr1g0317061
rosa_laevigata	RLG00000030629
rosa_multiflora	Rmu_co8457401.1_g000001 Rmu_sc0018727.1_g000004
rosa_roxburghii	Rroxscaffold_4G00330690
rosa_rugosa	Rorug01G0014200
rosa_samantha	Rh1AG025300 Rh1BG022100 Rh1CG023700 Rh1DG022500
rosa_wichuraiana	Rw1G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	3 cut(s)	297, 726, 834
AclWI	GGATC	2 cut(s)	479, 664
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	772
AfaI	GTAC	2 cut(s)	5, 423
AfiI	CCNNNNNNNGG	4 cut(s)	167, 296, 353, 464
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	7 cut(s)	281, 406, 697, 709, 733, 748, 754
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	5 cut(s)	82, 271, 360, 373, 463
AluBI	AGCT	6 cut(s)	17, 331, 539, 550, 607, 761
AluI	AGCT	6 cut(s)	17, 331, 539, 550, 607, 761
Alw21I	GWGCWC	2 cut(s)	130, 829
Alw26I	GTCTC	3 cut(s)	93, 165, 620
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	479, 664
AoxI	GGCC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	539, 648, 737, 758
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	299, 389, 836
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	2 cut(s)	221, 644
AvaII	GGWCC	3 cut(s)	299, 389, 836
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	130, 829
BbvI	GCAGC	4 cut(s)	526, 635, 724, 770
BccI	CCATC	2 cut(s)	658, 848
BceAI	ACGGC	3 cut(s)	264, 476, 661
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	5 cut(s)	84, 273, 362, 375, 465
BciVI	GTATCC	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	808
BcoDI	GTCTC	3 cut(s)	93, 165, 620
BfaI	CTAG	3 cut(s)	351, 443, 845
BfmI	CTRYAG	3 cut(s)	12, 540, 610
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	4 cut(s)	540, 649, 738, 759
BlsI	GCNGC	4 cut(s)	541, 650, 739, 760
Bme1390I	CCNGG	6 cut(s)	84, 273, 362, 375, 465, 808
Bme18I	GGWCC	3 cut(s)	299, 389, 836
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	299, 389, 836
BmiI	GGNNCC	3 cut(s)	390, 391, 838
BmrFI	CCNGG	6 cut(s)	84, 273, 362, 375, 465, 808
BmsI	GCATC	4 cut(s)	122, 301, 436, 496
BpiI	GAAGAC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	808
BsaI	GGTCTC	2 cut(s)	93, 165
BsaJI	CCNNGG	4 cut(s)	83, 374, 415, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 296, 353, 464
Bse1I	ACTGG	1 cut(s)	741
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	5 cut(s)	84, 273, 362, 375, 465
BseDI	CCNNGG	4 cut(s)	83, 374, 415, 652
BseGI	GGATG	3 cut(s)	316, 452, 840
BseLI	CCNNNNNNNGG	4 cut(s)	167, 296, 353, 464
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	77, 176
BseNI	ACTGG	1 cut(s)	741
BseRI	GAGGAG	2 cut(s)	150, 398
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	4 cut(s)	526, 635, 724, 770
BseYI	CCCAGC	1 cut(s)	557
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	130, 829
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	3 cut(s)	402, 466, 509
BslI	CCNNNNNNNGG	4 cut(s)	167, 296, 353, 464
BsmAI	GTCTC	3 cut(s)	93, 165, 620
BsmFI	GGGAC	3 cut(s)	402, 466, 509
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	2 cut(s)	93, 165
Bsp1286I	GDGCHC	2 cut(s)	130, 829
Bsp143I	GATC	2 cut(s)	471, 656
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	3 cut(s)	297, 726, 834
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	76, 175
BspLI	GGNNCC	3 cut(s)	390, 391, 838
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	479, 664
BspTNI	GGTCTC	2 cut(s)	93, 165
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	741
BssECI	CCNNGG	4 cut(s)	83, 374, 415, 652
BssMI	GATC	2 cut(s)	471, 656
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	5 cut(s)	84, 273, 362, 375, 465
Bst4CI	ACNGT	3 cut(s)	595, 614, 628
Bst6I	CTCTTC	2 cut(s)	129, 415
BstC8I	GCNNGC	2 cut(s)	295, 682
BstDEI	CTNAG	4 cut(s)	63, 162, 587, 873
BstDSI	CCRYGG	2 cut(s)	415, 652
BstEII	GGTNACC	1 cut(s)	356
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	316, 452, 840
BstKTI	GATC	2 cut(s)	474, 659
BstMAI	GTCTC	3 cut(s)	93, 165, 620
BstMBI	GATC	2 cut(s)	471, 656
BstNI	CCWGG	5 cut(s)	84, 273, 362, 375, 465
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	6 cut(s)	82, 271, 360, 373, 463, 806
BstSFI	CTRYAG	3 cut(s)	12, 540, 610
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	4 cut(s)	526, 635, 724, 770
BstV2I	GAAGAC	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	272
Bsu36I	CCTNAGG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	2 cut(s)	415, 652
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	316, 452, 840
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	3 cut(s)	159, 341, 624
Cac8I	GCNNGC	2 cut(s)	295, 682
Cfr13I	GGNCC	3 cut(s)	299, 389, 836
CseI	GACGC	1 cut(s)	644
CsiI	ACCWGGT	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	4, 422
CviAII	CATG	3 cut(s)	20, 29, 416
CviQI	GTAC	2 cut(s)	4, 422
DdeI	CTNAG	4 cut(s)	63, 162, 587, 873
DpnI	GATC	2 cut(s)	473, 658
DpnII	GATC	2 cut(s)	471, 656
Eam1104I	CTCTTC	2 cut(s)	129, 415
EarI	CTCTTC	2 cut(s)	129, 415
Eco130I	CCWWGG	1 cut(s)	415
Eco147I	AGGCCT	1 cut(s)	53
Eco31I	GGTCTC	2 cut(s)	93, 165
Eco47I	GGWCC	3 cut(s)	299, 389, 836
Eco57I	CTGAAG	1 cut(s)	772
Eco81I	CCTNAGG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	5 cut(s)	82, 271, 360, 373, 463
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	23, 32, 419
FaiI	YATR	9 cut(s)	21, 30, 71, 96, 193, 219, 396, 417, 822
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	3 cut(s)	402, 466, 509
FatI	CATG	3 cut(s)	19, 28, 415
Fnu4HI	GCNGC	4 cut(s)	540, 649, 738, 759
FokI	GGATG	3 cut(s)	323, 439, 827
Fsp4HI	GCNGC	4 cut(s)	540, 649, 738, 759
FspBI	CTAG	3 cut(s)	351, 443, 845
GluI	GCNGC	4 cut(s)	540, 649, 738, 759
GsaI	CCCAGC	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	808
HgaI	GACGC	1 cut(s)	644
Hin1II	CATG	3 cut(s)	23, 32, 419
HinfI	GANTC	4 cut(s)	187, 228, 479, 583
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	221, 644
Hpy166II	GTNNAC	3 cut(s)	128, 302, 422
Hpy188I	TCNGA	5 cut(s)	66, 233, 368, 435, 770
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	3 cut(s)	128, 302, 422
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	3 cut(s)	595, 614, 628
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	7 cut(s)	32, 128, 314, 341, 449, 542, 680
HpyF3I	CTNAG	4 cut(s)	63, 162, 587, 873
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	23, 32, 419
KflI	GGGWCCC	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	471, 656
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	4 cut(s)	526, 635, 724, 770
LweI	GCATC	4 cut(s)	122, 301, 436, 496
MabI	ACCWGGT	1 cut(s)	360
MaeI	CTAG	3 cut(s)	351, 443, 845
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	256, 356, 632
MalI	GATC	2 cut(s)	473, 658
MboI	GATC	2 cut(s)	471, 656
MboII	GAAGA	5 cut(s)	146, 296, 402, 419, 778
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	130, 829
MluCI	AATT	3 cut(s)	276, 315, 777
MlyI	GAGTC	2 cut(s)	181, 488
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	6 cut(s)	84, 273, 362, 375, 465, 808
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	5 cut(s)	84, 273, 362, 375, 465
NciI	CCSGG	1 cut(s)	808
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	471, 656
NlaIII	CATG	3 cut(s)	23, 32, 419
NlaIV	GGNNCC	3 cut(s)	390, 391, 838
NmuCI	GTSAC	2 cut(s)	256, 632
PceI	AGGCCT	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	228, 583
PflMI	CCANNNNNTGG	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	541, 650, 739, 760
PleI	GAGTC	2 cut(s)	181, 487
PpsI	GAGTC	2 cut(s)	181, 487
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
Psp6I	CCWGG	5 cut(s)	82, 271, 360, 373, 463
PspEI	GGTNACC	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	5 cut(s)	82, 271, 360, 373, 463
PspN4I	GGNNCC	3 cut(s)	390, 391, 838
PspPI	GGNCC	3 cut(s)	299, 389, 836
PspPPI	RGGWCCY	1 cut(s)	389
PsrI	GAACNNNNNNTAC	2 cut(s)	763, 795
PstI	CTGCAG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	5, 423
RsaNI	GTAC	2 cut(s)	4, 422
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	540, 649, 738, 759
Sau3AI	GATC	2 cut(s)	471, 656
Sau96I	GGNCC	3 cut(s)	299, 389, 836
SchI	GAGTC	2 cut(s)	181, 488
ScrFI	CCNGG	6 cut(s)	84, 273, 362, 375, 465, 808
SduI	GDGCHC	2 cut(s)	130, 829
SexAI	ACCWGGT	1 cut(s)	360
SfaNI	GCATC	4 cut(s)	122, 301, 436, 496
SfcI	CTRYAG	3 cut(s)	12, 540, 610
SinI	GGWCC	3 cut(s)	299, 389, 836
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
Sse9I	AATT	3 cut(s)	276, 315, 777
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	297, 726, 834
SspMI	CTAG	3 cut(s)	351, 443, 845
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	6 cut(s)	82, 271, 360, 373, 463, 806
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	595, 614, 628
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	116, 477, 669
TasI	AATT	3 cut(s)	276, 315, 777
TatI	WGTACW	2 cut(s)	3, 421
TfiI	GAWTC	2 cut(s)	228, 583
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	159, 348, 631
TseFI	GTSAC	2 cut(s)	256, 632
TseI	GCWGC	4 cut(s)	539, 648, 737, 758
Tsp45I	GTSAC	2 cut(s)	256, 632
TspDTI	ATGAA	3 cut(s)	490, 753, 864
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	3 cut(s)	159, 348, 631
Van91I	CCANNNNNTGG	1 cut(s)	464
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	3 cut(s)	299, 389, 836
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XspI	CTAG	3 cut(s)	351, 443, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.