Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009045

Physical Location & Seq

Genomic Coordinates Forward (+)

36310793 .. 36313266

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1307700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGTGAAAATGGCCACTGGGTTGCTCTCACTTTTGCTTTCATTCGCATTGCTGCTCACTAATCCTGCTTCTGCAGCTTTGCCTTTGGATGGACTCTTGGCCAATGGCAACTTTGAAGAACCGCCAAAACCAACAGACCTCAAGAAAACAGTTATCATAGGCAAAAATTCACTGCCCAAATGGGAAATCGATGGCCTGGTGGAGTACATCTCCGCGGGGCCGCAACCTGGCGGAATGTACTTTGACGTAGCTCATGGTGTCCATGCTGTGAGGCTTGGCAATGATGCCTCAATCTCCCAGACCATTAAGGTCAAGCTAGGGTCTCTGTATGCCCTAACATTTGGGGCATCGAGGACTTGTGCCCAAGAGGAGGTTTTGAGGGTGTCAGTTCCCCCCCAGGCAGGGGACCTTCCTCTGCAAACCTTGTACAGCAGCAATGGCGGCGACACTTACGCTTGGGGATTCAGAGCAACTTCTGAAACTGTTAAAGTGACCTTTCACAATCCTGGGATTCAAGAGGATCCTGCTTGTGGTCCACTCTTGGATGCAGTTGCTATCAAGGAGCTTTTCCCCGTGTACCCCTCTAGAGATAATTTGGTCAGAAACCCTGGCTTTGAAGAGGCTCCCCACAGGTTATTCAACTCTTCCCATGGTGTACTCCTCCCTCCAAAACAACTAGATGCGACATCCCCGCTCCCCGGCTGGATCATCGAGTCCCTCAAGGCCATAAAGTTCATCGACGCAAAACACTTCAATGTTCCATTCGGCAAGGGCGCGGTTGAGCTTGTTGCGGGGAGAGAAAGTGCCATAGCCCAGGTTCTTAGAACCGTTCCCAACAAGCTCTACAGCCTTTCATTCACAGTTGGTGATGCAAGAAACGGCTGCCATGGATCAATGATGGTTGAAGCATTTGCCGGCAAGGAAACGCTCAAAGTTCCCTTCACCTCCAAAGGAAAAGGCGGGTTCAAGACGGCCAGTTTCAGGTTCAAAGCGGTTTCAATCAGGACCAGAATCACGTTCTTCAGCTCTTTCTACCACACCAAGGACTATGGAGCTCTTTGCGGCCCTATCCTAGATGAAGTTAAGGTTTCCCCTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

368

Amino Acids

39.43

Weight (kDa)

8.87

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF642	PF04862	31 - 187	7.4e-67	Protein of unknown function (DUF642)
DUF642	PF04862	199 - 363	5.9e-14	Protein of unknown function (DUF642)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08030 AT3G08030
fragaria_vesca	FvH4_7g01370 FvH4_7g01370 FvH4_7g01370 FvH4_7g01370
malus_domestica	MD02G1307700.v1.1
prunus_persica	Prupe.2G017800_v2.0.a1 Prupe.2G017800_v2.0.a1
pyrus_communis	pycom02g25890 pycom07g01380
rosa_chinensis	RchiOBHm_Chr1g0317061
rosa_laevigata	RLG00000030629
rosa_multiflora	Rmu_co8457401.1_g000001 Rmu_sc0018727.1_g000004
rosa_roxburghii	Rroxscaffold_4G00330690
rosa_rugosa	Rorug01G0014200
rosa_samantha	Rh1AG025300 Rh1BG022100 Rh1CG023700 Rh1DG022500
rosa_wichuraiana	Rw1G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	694
AccII	CGCG	2 cut(s)	215, 776
AclWI	GGATC	4 cut(s)	515, 528, 713, 898
AcoI	YGGCCR	3 cut(s)	12, 99, 972
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	1006
AfaI	GTAC	5 cut(s)	206, 239, 428, 578, 657
AgsI	TTSAA	9 cut(s)	116, 515, 617, 640, 754, 905, 967, 988, 999
AjnI	CCWGG	6 cut(s)	195, 226, 396, 505, 607, 813
AluBI	AGCT	8 cut(s)	77, 251, 316, 565, 784, 841, 1026, 1055
AluI	AGCT	8 cut(s)	77, 251, 316, 565, 784, 841, 1026, 1055
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	4 cut(s)	515, 528, 713, 898
AoxI	GGCC	7 cut(s)	12, 99, 193, 218, 723, 972, 1063
ApeKI	GCWGC	4 cut(s)	52, 74, 432, 882
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	776
AspS9I	GGNCC	5 cut(s)	218, 406, 533, 1005, 1064
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	3 cut(s)	16, 878, 934
AvaII	GGWCC	3 cut(s)	406, 533, 1005
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	2 cut(s)	14, 101
BamHI	GGATCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	1057
Bbv12I	GWGCWC	1 cut(s)	1057
BbvI	GCAGC	4 cut(s)	39, 86, 444, 869
BccI	CCATC	3 cut(s)	83, 185, 892
BceAI	ACGGC	2 cut(s)	895, 987
BciT130I	CCWGG	6 cut(s)	197, 228, 398, 507, 609, 815
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	4 cut(s)	317, 585, 677, 1073
BfmI	CTRYAG	2 cut(s)	72, 844
BisI	GCNGC	7 cut(s)	53, 75, 221, 433, 442, 883, 1063
BlsI	GCNGC	7 cut(s)	54, 76, 222, 434, 443, 884, 1064
Bme1390I	CCNGG	7 cut(s)	197, 228, 398, 507, 609, 699, 815
Bme18I	GGWCC	3 cut(s)	406, 533, 1005
BmgT120I	GGNCC	5 cut(s)	218, 406, 533, 1005, 1064
BmiI	GGNNCC	4 cut(s)	219, 407, 522, 624
BmrFI	CCNGG	7 cut(s)	197, 228, 398, 507, 609, 699, 815
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	5 cut(s)	274, 356, 535, 670, 859
BmuI	ACTGGG	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuEI	CTTGAG	2 cut(s)	125, 704
BpuMI	CCSGG	1 cut(s)	699
Bsa29I	ATCGAT	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	9 cut(s)	213, 396, 506, 607, 649, 697, 813, 886, 1041
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bse118I	RCCGGY	1 cut(s)	914
Bse1I	ACTGG	2 cut(s)	22, 975
Bse3DI	GCAATG	3 cut(s)	47, 286, 442
BseBI	CCWGG	6 cut(s)	197, 228, 398, 507, 609, 815
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	9 cut(s)	213, 396, 506, 607, 649, 697, 813, 886, 1041
BseGI	GGATG	3 cut(s)	94, 550, 686
BseMI	GCAATG	3 cut(s)	47, 286, 442
BseNI	ACTGG	2 cut(s)	22, 975
BseRI	GAGGAG	2 cut(s)	383, 650
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	4 cut(s)	39, 86, 444, 869
Bsh1236I	CGCG	2 cut(s)	215, 776
BshFI	GGCC	7 cut(s)	14, 101, 195, 220, 725, 974, 1065
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiSI	CCGG	2 cut(s)	699, 915
BslFI	GGGAC	2 cut(s)	419, 700
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	419, 700
BsnI	GGCC	7 cut(s)	14, 101, 195, 220, 725, 974, 1065
Bso31I	GGTCTC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	364, 1057
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	520, 705, 890
Bsp19I	CCATGG	2 cut(s)	649, 886
BspANI	GGCC	7 cut(s)	14, 101, 195, 220, 725, 974, 1065
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	215, 776
BspLI	GGNNCC	4 cut(s)	219, 407, 522, 624
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	4 cut(s)	515, 528, 713, 898
BspTNI	GGTCTC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	694
BsrDI	GCAATG	3 cut(s)	47, 286, 442
BsrFI	RCCGGY	1 cut(s)	914
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	22, 975
BssAI	RCCGGY	1 cut(s)	914
BssECI	CCNNGG	9 cut(s)	213, 396, 506, 607, 649, 697, 813, 886, 1041
BssMI	GATC	3 cut(s)	520, 705, 890
BssT1I	CCWWGG	3 cut(s)	649, 886, 1041
Bst2UI	CCWGG	6 cut(s)	197, 228, 398, 507, 609, 815
Bst4CI	ACNGT	4 cut(s)	151, 484, 829, 862
Bst6I	CTCTTC	2 cut(s)	612, 649
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	916
BstDEI	CTNAG	1 cut(s)	821
BstDSI	CCRYGG	3 cut(s)	213, 649, 886
BstF5I	GGATG	3 cut(s)	94, 550, 686
BstFNI	CGCG	2 cut(s)	215, 776
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	3 cut(s)	523, 708, 893
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	520, 705, 890
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 438, 441
BstNI	CCWGG	6 cut(s)	197, 228, 398, 507, 609, 815
BstSCI	CCNGG	7 cut(s)	195, 226, 396, 505, 607, 697, 813
BstSFI	CTRYAG	2 cut(s)	72, 844
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	2 cut(s)	215, 776
BstV1I	GCAGC	4 cut(s)	39, 86, 444, 869
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	7 cut(s)	14, 101, 195, 220, 725, 974, 1065
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	3 cut(s)	213, 649, 886
BtsCI	GGATG	3 cut(s)	94, 550, 686
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	15, 170
Cac8I	GCNNGC	1 cut(s)	916
CfoI	GCGC	1 cut(s)	776
Cfr10I	RCCGGY	1 cut(s)	914
Cfr13I	GGNCC	5 cut(s)	218, 406, 533, 1005, 1064
Cfr42I	CCGCGG	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	5 cut(s)	205, 238, 427, 577, 656
CviAII	CATG	4 cut(s)	254, 263, 650, 887
CviQI	GTAC	5 cut(s)	205, 238, 427, 577, 656
DdeI	CTNAG	1 cut(s)	821
DpnI	GATC	3 cut(s)	522, 707, 892
DpnII	GATC	3 cut(s)	520, 705, 890
EaeI	YGGCCR	3 cut(s)	12, 99, 972
Eam1104I	CTCTTC	2 cut(s)	612, 649
EarI	CTCTTC	2 cut(s)	612, 649
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	1055
Eco130I	CCWWGG	3 cut(s)	649, 886, 1041
Eco24I	GRGCYC	1 cut(s)	1057
Eco31I	GGTCTC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	406, 533, 1005
Eco53kI	GAGCTC	1 cut(s)	1055
Eco57I	CTGAAG	1 cut(s)	1006
EcoICRI	GAGCTC	1 cut(s)	1055
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	6 cut(s)	195, 226, 396, 505, 607, 813
EcoT14I	CCWWGG	3 cut(s)	649, 886, 1041
EcoT38I	GRGCYC	1 cut(s)	1057
ErhI	CCWWGG	3 cut(s)	649, 886, 1041
FaeI	CATG	4 cut(s)	257, 266, 653, 890
FaiI	YATR	9 cut(s)	158, 255, 264, 330, 651, 728, 809, 888, 1050
FaqI	GGGAC	2 cut(s)	419, 700
FatI	CATG	4 cut(s)	253, 262, 649, 886
FauI	CCCGC	4 cut(s)	208, 699, 784, 953
Fnu4HI	GCNGC	7 cut(s)	53, 75, 221, 433, 442, 883, 1063
FokI	GGATG	3 cut(s)	101, 557, 673
FriOI	GRGCYC	1 cut(s)	1057
Fsp4HI	GCNGC	7 cut(s)	53, 75, 221, 433, 442, 883, 1063
FspBI	CTAG	4 cut(s)	317, 585, 677, 1073
GlaI	GCGC	1 cut(s)	775
GluI	GCNGC	7 cut(s)	53, 75, 221, 433, 442, 883, 1063
HaeIII	GGCC	7 cut(s)	14, 101, 195, 220, 725, 974, 1065
HapII	CCGG	2 cut(s)	699, 915
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	1 cut(s)	776
Hin1II	CATG	4 cut(s)	257, 266, 653, 890
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HinfI	GANTC	5 cut(s)	93, 462, 511, 713, 1011
HpaII	CCGG	2 cut(s)	699, 915
HphI	GGTGA	3 cut(s)	16, 878, 934
Hpy166II	GTNNAC	3 cut(s)	536, 577, 656
Hpy188I	TCNGA	3 cut(s)	467, 478, 602
Hpy188III	TCNNGA	5 cut(s)	142, 515, 585, 967, 1003
Hpy8I	GTNNAC	3 cut(s)	536, 577, 656
Hpy99I	CGWCG	1 cut(s)	743
HpyAV	CCTTC	2 cut(s)	419, 949
HpyCH4III	ACNGT	4 cut(s)	151, 484, 829, 862
HpyCH4IV	ACGT	2 cut(s)	246, 1016
HpyCH4V	TGCA	4 cut(s)	74, 418, 548, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 438, 441
HpyF3I	CTNAG	1 cut(s)	821
HpySE526I	ACGT	2 cut(s)	246, 1016
Hsp92II	CATG	4 cut(s)	257, 266, 653, 890
HspAI	GCGC	1 cut(s)	774
KroI	GCCGGC	1 cut(s)	914
KroNI	GCCGGC	1 cut(s)	916
KspI	CCGCGG	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	520, 705, 890
LmnI	GCTCC	4 cut(s)	562, 628, 699, 1052
Lsp1109I	GCAGC	4 cut(s)	39, 86, 444, 869
LweI	GCATC	5 cut(s)	274, 356, 535, 670, 859
MaeI	CTAG	4 cut(s)	317, 585, 677, 1073
MaeII	ACGT	2 cut(s)	246, 1016
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	3 cut(s)	522, 707, 892
MbiI	CCGCTC	1 cut(s)	694
MboI	GATC	3 cut(s)	520, 705, 890
MboII	GAAGA	4 cut(s)	128, 629, 636, 1012
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	2 cut(s)	364, 1057
MlsI	TGGCCA	2 cut(s)	14, 101
MluCI	AATT	2 cut(s)	166, 592
MluNI	TGGCCA	2 cut(s)	14, 101
MlyI	GAGTC	2 cut(s)	87, 722
Mox20I	TGGCCA	2 cut(s)	14, 101
MroNI	GCCGGC	1 cut(s)	914
MscI	TGGCCA	2 cut(s)	14, 101
MseI	TTAA	4 cut(s)	306, 486, 1083, 1102
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	2 cut(s)	14, 101
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	699, 915
MspR9I	CCNGG	7 cut(s)	197, 228, 398, 507, 609, 699, 815
MvaI	CCWGG	6 cut(s)	197, 228, 398, 507, 609, 815
MvnI	CGCG	2 cut(s)	215, 776
MwoI	GCNNNNNNNGC	3 cut(s)	74, 438, 441
NaeI	GCCGGC	1 cut(s)	916
NciI	CCSGG	1 cut(s)	699
NcoI	CCATGG	2 cut(s)	649, 886
NdeII	GATC	3 cut(s)	520, 705, 890
NgoMIV	GCCGGC	1 cut(s)	914
NlaIII	CATG	4 cut(s)	257, 266, 653, 890
NlaIV	GGNNCC	4 cut(s)	219, 407, 522, 624
NmuCI	GTSAC	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	916
PfeI	GAWTC	3 cut(s)	462, 511, 1011
PkrI	GCNGC	7 cut(s)	54, 76, 222, 434, 443, 884, 1064
PleI	GAGTC	2 cut(s)	87, 721
PpsI	GAGTC	2 cut(s)	87, 721
PpuMI	RGGWCCY	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	1057
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	6 cut(s)	195, 226, 396, 505, 607, 813
PspGI	CCWGG	6 cut(s)	195, 226, 396, 505, 607, 813
PspN4I	GGNNCC	4 cut(s)	219, 407, 522, 624
PspPI	GGNCC	5 cut(s)	218, 406, 533, 1005, 1064
PspPPI	RGGWCCY	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	5 cut(s)	206, 239, 428, 578, 657
RsaNI	GTAC	5 cut(s)	205, 238, 427, 577, 656
RseI	CAYNNNNRTG	1 cut(s)	753
SacI	GAGCTC	1 cut(s)	1057
SacII	CCGCGG	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	306, 486, 1083, 1102
SatI	GCNGC	7 cut(s)	53, 75, 221, 433, 442, 883, 1063
Sau3AI	GATC	3 cut(s)	520, 705, 890
Sau96I	GGNCC	5 cut(s)	218, 406, 533, 1005, 1064
SchI	GAGTC	2 cut(s)	87, 722
ScrFI	CCNGG	7 cut(s)	197, 228, 398, 507, 609, 699, 815
SduI	GDGCHC	2 cut(s)	364, 1057
SfaNI	GCATC	5 cut(s)	274, 356, 535, 670, 859
SfcI	CTRYAG	2 cut(s)	72, 844
Sfr303I	CCGCGG	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	216
SinI	GGWCC	3 cut(s)	406, 533, 1005
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	140, 719
SmoI	CTYRAG	2 cut(s)	140, 719
Sse9I	AATT	2 cut(s)	166, 592
SspMI	CTAG	4 cut(s)	317, 585, 677, 1073
SstI	GAGCTC	1 cut(s)	1057
StyD4I	CCNGG	7 cut(s)	195, 226, 396, 505, 607, 697, 813
StyI	CCWWGG	3 cut(s)	649, 886, 1041
TaaI	ACNGT	4 cut(s)	151, 484, 829, 862
TaiI	ACGT	2 cut(s)	249, 1019
TaqI	TCGA	4 cut(s)	189, 350, 711, 738
TasI	AATT	2 cut(s)	166, 592
TatI	WGTACW	4 cut(s)	204, 237, 426, 655
TauI	GCSGC	3 cut(s)	223, 444, 1065
TfiI	GAWTC	3 cut(s)	462, 511, 1011
Tru1I	TTAA	4 cut(s)	306, 486, 1083, 1102
Tru9I	TTAA	4 cut(s)	306, 486, 1083, 1102
TscAI	CASTG	2 cut(s)	22, 177
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	4 cut(s)	52, 74, 432, 882
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	4 cut(s)	30, 724, 843, 1092
TspRI	CASTG	2 cut(s)	22, 177
VpaK11BI	GGWCC	3 cut(s)	406, 533, 1005
XapI	RAATTY	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	584
XspI	CTAG	4 cut(s)	317, 585, 677, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.