Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009045

Physical Location & Seq

Genomic Coordinates Reverse (-)

1759898 .. 1771464

Gene Structure 11567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTCTGTTACTAGTCTCTTTTACACTTGCTCTCTCCCTCATTTCCACCAGTCCTGCCTTTGCTGTTGCACCTAAGCCTTTTGAAGGACTCTTGGCCAATGGAAATTTCGAAGAACCACCAAAACCAAGCAGCCTCAAGAAAACAGTACTCATAGGCAAAAATGCACTGCCCAAATGGGAAATCAATGGATTTGTGGAGTACATCTCCGGCGGGCCTCAACCAGGCGGCATGTACTTTGCTGTAGCTCATGGTGTCCATGCAGTTAGGCTCGGCAATGAGGCCTCGATCTCTCAGACCATAAAGGTCAAACCAGGATCTCTATATGCCCTAACATTCGGGGCATCAAGAACTTGTGCACAGGAAGAGGTTTTGAGGGTATCAGTGCCTCCTCAGGCAGGAGACCTTCCTTTGCAGACTCTATACAGCAGTAATGGAGGCGATACTTATGCTTGGGGATTCAAAGCCACTTCTAACACAGTTAAAGTGACTTTCCACAATCCTGGAATTCAAGAAGACCCTGCTTGCGGTCCACTCTTGGATGCAATTGCTATCAAGGAGCTCTTCCCTGTACTGCCCACCAGAGATAATCTGGTCAGAAATCCTGGGTTTGAGGAGGCACCCCATAGGTTAATGAACTCTTCCCATGGTGTACTCCTTCCTCCAAAACAACTAGATGCAACCTCCCCACTTCCTGGCTGGATCATTGAGTCCCTCAAAGCCGTAAAGTTCATTGATGCCAAGCACTTTAATGTCCCATTTGGAAAGGGTGCGGTTGAGCTTGTTGCTGGGAGAGAGAGTGCCATCGCCCAGGTTCTTAGAACAGTTCCCAACAAGCTCTACAGTCTCTCATTCACTATCGGTGACGCAAGGAACGGCTGCCATGGATCAATGATGGTCGAAGCATTTGCAGGCAAGGATACCTTGAAAGTTCCTTTCAACTCTCAAGGAAAAGGCGGTTTCAAGAATGCTAGTTTCAAGTTCAAAGCAACTTCATTCAGGACCAGAATTACATTCTTCAGTTCTTTCTACCACACCAGGACTGATGACTATGGTGCTCTTTGTGGACCCATCCTAGATGAAGTTAAGGTTTCTCCTATTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

369

Amino Acids

39.49

Weight (kDa)

9.12

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF642	PF04862	30 - 186	1.4e-68	Protein of unknown function (DUF642)
DUF642	PF04862	198 - 364	2.6e-14	Protein of unknown function (DUF642)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08030 AT3G08030
fragaria_vesca	FvH4_7g01370 FvH4_7g01370 FvH4_7g01370 FvH4_7g01370
malus_domestica	MD02G1307700.v1.1
prunus_persica	Prupe.2G017800_v2.0.a1 Prupe.2G017800_v2.0.a1
pyrus_communis	pycom02g25890 pycom07g01380
rosa_chinensis	RchiOBHm_Chr1g0317061
rosa_laevigata	RLG00000030629
rosa_multiflora	Rmu_co8457401.1_g000001 Rmu_sc0018727.1_g000004
rosa_roxburghii	Rroxscaffold_4G00330690
rosa_rugosa	Rorug01G0014200
rosa_samantha	Rh1AG025300 Rh1BG022100 Rh1CG023700 Rh1DG022500
rosa_wichuraiana	Rw1G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	695
AciI	CCGC	5 cut(s)	213, 228, 528, 773, 957
AclWI	GGATC	3 cut(s)	325, 710, 895
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	106, 507
AcuI	CTGAAG	1 cut(s)	1003
AfaI	GTAC	5 cut(s)	150, 203, 236, 573, 654
AfiI	CCNNNNNNNGG	5 cut(s)	86, 224, 398, 527, 695
AgsI	TTSAA	8 cut(s)	86, 463, 512, 928, 940, 964, 979, 985
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	7 cut(s)	223, 313, 502, 604, 694, 810, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	4 cut(s)	248, 562, 781, 838
AluI	AGCT	4 cut(s)	248, 562, 781, 838
Alw21I	GWGCWC	3 cut(s)	361, 564, 1060
Alw26I	GTCTC	3 cut(s)	22, 396, 851
Alw44I	GTGCAC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	325, 710, 895
AoxI	GGCC	3 cut(s)	96, 215, 282
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	132, 879
ApoI	RAATTY	2 cut(s)	106, 507
AspS9I	GGNCC	4 cut(s)	215, 530, 1002, 1067
AsuHPI	GGTGA	1 cut(s)	875
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	3 cut(s)	530, 1002, 1067
AxyI	CCTNAGG	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	361
BalI	TGGCCA	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	3 cut(s)	361, 564, 1060
BbvI	GCAGC	2 cut(s)	144, 866
BccI	CCATC	3 cut(s)	812, 889, 1079
BceAI	ACGGC	2 cut(s)	707, 892
BcgI	CGANNNNNNTGC	4 cut(s)	431, 465, 890, 924
BciT130I	CCWGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
BciVI	GTATCC	1 cut(s)	913
BcoDI	GTCTC	3 cut(s)	22, 396, 851
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	5 cut(s)	14, 674, 972, 1076, 1105
BfmI	CTRYAG	2 cut(s)	243, 841
BfuI	GTATCC	1 cut(s)	913
BisI	GCNGC	3 cut(s)	133, 229, 880
BlsI	GCNGC	3 cut(s)	134, 230, 881
BmcAI	AGTACT	1 cut(s)	150
Bme1390I	CCNGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
Bme18I	GGWCC	3 cut(s)	530, 1002, 1067
BmgT120I	GGNCC	4 cut(s)	215, 530, 1002, 1067
BmiI	GGNNCC	2 cut(s)	621, 1069
BmrFI	CCNGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
BmsI	GCATC	4 cut(s)	353, 532, 667, 727
BpiI	GAAGAC	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	122, 930
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	605, 646, 810, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 224, 398, 527, 695
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	283
BseBI	CCWGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
BseDI	CCNNGG	4 cut(s)	605, 646, 810, 883
BseGI	GGATG	2 cut(s)	547, 1071
BseLI	CCNNNNNNNGG	5 cut(s)	86, 224, 398, 527, 695
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	308, 407
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	2 cut(s)	381, 629
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	144, 866
BseYI	CCCAGC	1 cut(s)	788
BshFI	GGCC	3 cut(s)	98, 217, 284
BshNI	GGYRCC	1 cut(s)	619
BsiHKAI	GWGCWC	3 cut(s)	361, 564, 1060
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	697, 740
BslI	CCNNNNNNNGG	5 cut(s)	86, 224, 398, 527, 695
BsmAI	GTCTC	3 cut(s)	22, 396, 851
BsmFI	GGGAC	2 cut(s)	697, 740
BsmI	GAATGC	1 cut(s)	973
BsnI	GGCC	3 cut(s)	98, 217, 284
Bso31I	GGTCTC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	3 cut(s)	361, 564, 1060
Bsp143I	GATC	4 cut(s)	288, 317, 702, 887
Bsp19I	CCATGG	2 cut(s)	646, 883
BspACI	CCGC	5 cut(s)	213, 228, 528, 773, 957
BspANI	GGCC	3 cut(s)	98, 217, 284
BspCNI	CTCAG	2 cut(s)	307, 406
BspLI	GGNNCC	2 cut(s)	621, 1069
BspPI	GGATC	3 cut(s)	325, 710, 895
BspQI	GCTCTTC	1 cut(s)	569
BspT104I	TTCGAA	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	619
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	4 cut(s)	605, 646, 810, 883
BssMI	GATC	4 cut(s)	288, 317, 702, 887
BssT1I	CCWWGG	2 cut(s)	646, 883
Bst2UI	CCWGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
Bst4CI	ACNGT	4 cut(s)	148, 481, 826, 845
Bst6I	CTCTTC	3 cut(s)	360, 569, 646
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	215, 526, 913
BstDEI	CTNAG	4 cut(s)	75, 294, 393, 818
BstDSI	CCRYGG	2 cut(s)	646, 883
BstENI	CCTNNNNNAGG	3 cut(s)	84, 222, 396
BstF5I	GGATG	2 cut(s)	547, 1071
BstKTI	GATC	4 cut(s)	291, 320, 705, 890
BstMAI	GTCTC	3 cut(s)	22, 396, 851
BstMBI	GATC	4 cut(s)	288, 317, 702, 887
BstNI	CCWGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	7 cut(s)	223, 313, 502, 604, 694, 810, 1037
BstSFI	CTRYAG	2 cut(s)	243, 841
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	144, 866
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	3 cut(s)	98, 217, 284
BtgI	CCRYGG	2 cut(s)	646, 883
BtgZI	GCGATG	1 cut(s)	790
BtsCI	GGATG	2 cut(s)	547, 1071
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	167, 390
Cac8I	GCNNGC	3 cut(s)	215, 526, 913
Cfr13I	GGNCC	4 cut(s)	215, 530, 1002, 1067
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	5 cut(s)	149, 202, 235, 572, 653
CviAII	CATG	5 cut(s)	232, 251, 260, 647, 884
CviQI	GTAC	5 cut(s)	149, 202, 235, 572, 653
DdeI	CTNAG	4 cut(s)	75, 294, 393, 818
DpnI	GATC	4 cut(s)	290, 319, 704, 889
DpnII	GATC	4 cut(s)	288, 317, 702, 887
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	3 cut(s)	360, 569, 646
EarI	CTCTTC	3 cut(s)	360, 569, 646
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	646, 883
Eco147I	AGGCCT	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	3 cut(s)	530, 1002, 1067
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	1003
Eco81I	CCTNAGG	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	562
EcoNI	CCTNNNNNAGG	3 cut(s)	84, 222, 396
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	7 cut(s)	223, 313, 502, 604, 694, 810, 1037
EcoT14I	CCWWGG	2 cut(s)	646, 883
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	646, 883
FaeI	CATG	5 cut(s)	235, 254, 263, 650, 887
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 908, 940
FaqI	GGGAC	2 cut(s)	697, 740
FatI	CATG	5 cut(s)	231, 250, 259, 646, 883
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	133, 229, 880
FokI	GGATG	2 cut(s)	554, 1058
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	133, 229, 880
FspBI	CTAG	5 cut(s)	14, 674, 972, 1076, 1105
GluI	GCNGC	3 cut(s)	133, 229, 880
GsaI	CCCAGC	1 cut(s)	792
HaeIII	GGCC	3 cut(s)	98, 217, 284
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	875
Hin1II	CATG	5 cut(s)	235, 254, 263, 650, 887
HinfI	GANTC	4 cut(s)	90, 418, 459, 710
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	875
Hpy166II	GTNNAC	4 cut(s)	359, 533, 653, 1067
Hpy188I	TCNGA	2 cut(s)	297, 599
Hpy188III	TCNNGA	5 cut(s)	139, 348, 512, 964, 1000
Hpy8I	GTNNAC	4 cut(s)	359, 533, 653, 1067
HpyAV	CCTTC	3 cut(s)	80, 416, 668
HpyCH4III	ACNGT	4 cut(s)	148, 481, 826, 845
HpyCH4V	TGCA	8 cut(s)	71, 167, 263, 359, 415, 545, 680, 911
HpyF3I	CTNAG	4 cut(s)	75, 294, 393, 818
Hsp92II	CATG	5 cut(s)	235, 254, 263, 650, 887
Kzo9I	GATC	4 cut(s)	288, 317, 702, 887
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	2 cut(s)	144, 866
LweI	GCATC	4 cut(s)	353, 532, 667, 727
MaeI	CTAG	5 cut(s)	14, 674, 972, 1076, 1105
MaeIII	GTNAC	3 cut(s)	9, 487, 863
MalI	GATC	4 cut(s)	290, 319, 704, 889
MboI	GATC	4 cut(s)	288, 317, 702, 887
MboII	GAAGA	6 cut(s)	125, 377, 527, 556, 633, 1009
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	3 cut(s)	361, 564, 1060
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	4 cut(s)	106, 507, 546, 1008
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	3 cut(s)	84, 412, 719
Mox20I	TGGCCA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	4 cut(s)	483, 632, 750, 1086
MslI	CAYNNNNRTG	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	973
MvaI	CCWGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
NcoI	CCATGG	2 cut(s)	646, 883
NdeII	GATC	4 cut(s)	288, 317, 702, 887
NlaIII	CATG	5 cut(s)	235, 254, 263, 650, 887
NlaIV	GGNNCC	2 cut(s)	621, 1069
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	2 cut(s)	487, 863
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	569
PctI	GAATGC	1 cut(s)	973
PfeI	GAWTC	1 cut(s)	459
PflMI	CCANNNNNTGG	1 cut(s)	695
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	134, 230, 881
PleI	GAGTC	3 cut(s)	84, 412, 718
PpsI	GAGTC	3 cut(s)	84, 412, 718
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	7 cut(s)	223, 313, 502, 604, 694, 810, 1037
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	7 cut(s)	223, 313, 502, 604, 694, 810, 1037
PspN4I	GGNNCC	2 cut(s)	621, 1069
PspPI	GGNCC	4 cut(s)	215, 530, 1002, 1067
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	5 cut(s)	150, 203, 236, 573, 654
RsaNI	GTAC	5 cut(s)	149, 202, 235, 572, 653
RseI	CAYNNNNRTG	1 cut(s)	750
SacI	GAGCTC	1 cut(s)	564
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	483, 632, 750, 1086
SatI	GCNGC	3 cut(s)	133, 229, 880
Sau3AI	GATC	4 cut(s)	288, 317, 702, 887
Sau96I	GGNCC	4 cut(s)	215, 530, 1002, 1067
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	3 cut(s)	84, 412, 719
ScrFI	CCNGG	7 cut(s)	225, 315, 504, 606, 696, 812, 1039
SduI	GDGCHC	3 cut(s)	361, 564, 1060
SfaNI	GCATC	4 cut(s)	353, 532, 667, 727
SfcI	CTRYAG	2 cut(s)	243, 841
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	3 cut(s)	530, 1002, 1067
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	137, 945
SmoI	CTYRAG	2 cut(s)	137, 945
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	4 cut(s)	106, 507, 546, 1008
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	5 cut(s)	213, 228, 528, 773, 957
SspMI	CTAG	5 cut(s)	14, 674, 972, 1076, 1105
SstI	GAGCTC	1 cut(s)	564
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	7 cut(s)	223, 313, 502, 604, 694, 810, 1037
StyI	CCWWGG	2 cut(s)	646, 883
TaaI	ACNGT	4 cut(s)	148, 481, 826, 845
TaqI	TCGA	3 cut(s)	111, 287, 900
TasI	AATT	4 cut(s)	106, 507, 546, 1008
TatI	WGTACW	5 cut(s)	148, 201, 234, 571, 652
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	4 cut(s)	483, 632, 750, 1086
Tru9I	TTAA	4 cut(s)	483, 632, 750, 1086
TscAI	CASTG	2 cut(s)	174, 390
TseFI	GTSAC	2 cut(s)	487, 863
TseI	GCWGC	2 cut(s)	132, 879
Tsp45I	GTSAC	2 cut(s)	487, 863
TspDTI	ATGAA	4 cut(s)	650, 721, 984, 1095
TspRI	CASTG	2 cut(s)	174, 390
Van91I	CCANNNNNTGG	1 cut(s)	695
VneI	GTGCAC	1 cut(s)	357
VpaK11BI	GGWCC	3 cut(s)	530, 1002, 1067
XagI	CCTNNNNNAGG	3 cut(s)	84, 222, 396
XapI	RAATTY	2 cut(s)	106, 507
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	589, 696
XspI	CTAG	5 cut(s)	14, 674, 972, 1076, 1105
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.