Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457401.1

Orthogroup ID

OG0009045

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1663

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457401.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1019 bp

gactcttggacaatggaaattttgaagaaccaccaaaacgaagcaacctcaagaaaacagtactcataggcaaaaatgcactgcccaaatgggaaatcaatggccttgtggagtacgtctctggcgggcctcaaccaggcggcatgtactttcctgtagctcatggtgtccatgcagttaggcttggcaatgaggcctcaatctctcagaccataaaggtcaaaccagggtctctgtatgccctaacatttggggcatcgaggacttgtgcacaagaagaggttttgagagtatcagtgcctcctcaggcaggagaccttcctttgcagactctatacagcagtaatggaggtgatacttatgcttggggattcagagccacttctaacacggctaaagtgactttccacaatcctggaattcaagaagaccctgcttgcggtccactcttggatgcaattgctatcaaggagcttctccctgcactgcccactagaggtaacctggtcagaaatcctgggtttgaggagggaccccataggctaatcaactcttcccatggtgtacttcttcctccgaaacaactagatgcaacatccccacttcctggctggatcatcgagtccctcaaagccgtaaagttcattgatgccaagcactttaatgtcccatttggaaaagctgcagttgagcttgttgctgggagagagagtgctattgcccagattcttagaacagttcccaacaagctctacagtctctcattcactgtcggagacgcaaggaacggctgccacggatcaatgatggtcgaagcatttgcaggcaaggataccttgaaagttcctttcaactctcaaggaaaaggcggtttcaaggctgccagtttcaagttcaaagcagcttcattcagaaccagaattacattcttcagttctttctaccacaccaggactgatgactatggtgctctttgcggacccatcctagatgaagttcgggtttctcctattgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

338

Amino Acids

36.35

Weight (kDa)

9.26

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08030 AT3G08030
fragaria_vesca	FvH4_7g01370 FvH4_7g01370 FvH4_7g01370 FvH4_7g01370
malus_domestica	MD02G1307700.v1.1
prunus_persica	Prupe.2G017800_v2.0.a1 Prupe.2G017800_v2.0.a1
pyrus_communis	pycom02g25890 pycom07g01380
rosa_chinensis	RchiOBHm_Chr1g0317061
rosa_laevigata	RLG00000030629
rosa_multiflora	Rmu_co8457401.1_g000001 Rmu_sc0018727.1_g000004
rosa_roxburghii	Rroxscaffold_4G00330690
rosa_rugosa	Rorug01G0014200
rosa_samantha	Rh1AG025300 Rh1BG022100 Rh1CG023700 Rh1DG022500
rosa_wichuraiana	Rw1G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	607
AciI	CCGC	5 cut(s)	125, 140, 440, 869, 977
AclWI	GGATC	2 cut(s)	622, 807
AcsI	RAATTY	2 cut(s)	18, 419
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	4 cut(s)	62, 115, 148, 566
AfiI	CCNNNNNNNGG	5 cut(s)	136, 310, 439, 496, 607
AgsI	TTSAA	7 cut(s)	25, 424, 840, 852, 876, 891, 897
AjnI	CCWGG	7 cut(s)	135, 225, 414, 503, 516, 606, 949
AluBI	AGCT	6 cut(s)	160, 474, 682, 693, 750, 904
AluI	AGCT	6 cut(s)	160, 474, 682, 693, 750, 904
Alw21I	GWGCWC	2 cut(s)	273, 972
Alw26I	GTCTC	5 cut(s)	123, 236, 308, 763, 770
Alw44I	GTGCAC	1 cut(s)	269
AlwI	GGATC	2 cut(s)	622, 807
AoxI	GGCC	3 cut(s)	102, 127, 194
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	4 cut(s)	682, 791, 880, 901
ApoI	RAATTY	2 cut(s)	18, 419
AspS9I	GGNCC	4 cut(s)	127, 442, 532, 979
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	3 cut(s)	442, 532, 979
AxyI	CCTNAGG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	273, 972
BbvI	GCAGC	4 cut(s)	669, 778, 867, 913
BccI	CCATC	2 cut(s)	801, 991
BceAI	ACGGC	3 cut(s)	407, 619, 804
BcgI	CGANNNNNNTGC	2 cut(s)	802, 836
BciT130I	CCWGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
BciVI	GTATCC	1 cut(s)	825
BcoDI	GTCTC	5 cut(s)	123, 236, 308, 763, 770
BfaI	CTAG	3 cut(s)	494, 586, 988
BfmI	CTRYAG	3 cut(s)	155, 683, 753
BfuI	GTATCC	1 cut(s)	825
BisI	GCNGC	5 cut(s)	141, 683, 792, 881, 902
BlsI	GCNGC	5 cut(s)	142, 684, 793, 882, 903
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
Bme18I	GGWCC	3 cut(s)	442, 532, 979
BmgT120I	GGNCC	4 cut(s)	127, 442, 532, 979
BmiI	GGNNCC	3 cut(s)	533, 534, 981
BmrFI	CCNGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
BmsI	GCATC	4 cut(s)	265, 444, 579, 639
BpiI	GAAGAC	1 cut(s)	434
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpuEI	CTTGAG	2 cut(s)	34, 842
BsaI	GGTCTC	2 cut(s)	236, 308
BsaJI	CCNNGG	4 cut(s)	226, 517, 558, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 310, 439, 496, 607
Bse1I	ACTGG	1 cut(s)	884
Bse21I	CCTNAGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
BseDI	CCNNGG	4 cut(s)	226, 517, 558, 795
BseGI	GGATG	3 cut(s)	459, 595, 983
BseLI	CCNNNNNNNGG	5 cut(s)	136, 310, 439, 496, 607
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	220, 319
BseNI	ACTGG	1 cut(s)	884
BseRI	GAGGAG	2 cut(s)	293, 541
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	4 cut(s)	669, 778, 867, 913
BseYI	CCCAGC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	3 cut(s)	104, 129, 196
BsiHKAI	GWGCWC	2 cut(s)	273, 972
BslFI	GGGAC	3 cut(s)	545, 609, 652
BslI	CCNNNNNNNGG	5 cut(s)	136, 310, 439, 496, 607
BsmAI	GTCTC	5 cut(s)	123, 236, 308, 763, 770
BsmBI	CGTCTC	2 cut(s)	123, 770
BsmFI	GGGAC	3 cut(s)	545, 609, 652
BsnI	GGCC	3 cut(s)	104, 129, 196
Bso31I	GGTCTC	2 cut(s)	236, 308
Bsp1286I	GDGCHC	2 cut(s)	273, 972
Bsp143I	GATC	2 cut(s)	614, 799
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	5 cut(s)	125, 140, 440, 869, 977
BspANI	GGCC	3 cut(s)	104, 129, 196
BspCNI	CTCAG	2 cut(s)	219, 318
BspLI	GGNNCC	3 cut(s)	533, 534, 981
BspMAI	CTGCAG	1 cut(s)	687
BspPI	GGATC	2 cut(s)	622, 807
BspTNI	GGTCTC	2 cut(s)	236, 308
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	884
BssECI	CCNNGG	4 cut(s)	226, 517, 558, 795
BssMI	GATC	2 cut(s)	614, 799
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
Bst4CI	ACNGT	4 cut(s)	60, 738, 757, 771
Bst6I	CTCTTC	2 cut(s)	272, 558
BstC8I	GCNNGC	3 cut(s)	127, 438, 825
BstDEI	CTNAG	4 cut(s)	206, 305, 730, 1016
BstDSI	CCRYGG	2 cut(s)	558, 795
BstEII	GGTNACC	1 cut(s)	499
BstENI	CCTNNNNNAGG	2 cut(s)	134, 308
BstF5I	GGATG	3 cut(s)	459, 595, 983
BstKTI	GATC	2 cut(s)	617, 802
BstMAI	GTCTC	5 cut(s)	123, 236, 308, 763, 770
BstMBI	GATC	2 cut(s)	614, 799
BstNI	CCWGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
BstNSI	RCATGY	1 cut(s)	147
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	7 cut(s)	135, 225, 414, 503, 516, 606, 949
BstSFI	CTRYAG	3 cut(s)	155, 683, 753
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	4 cut(s)	669, 778, 867, 913
BstV2I	GAAGAC	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	104, 129, 196
BtgI	CCRYGG	2 cut(s)	558, 795
BtsCI	GGATG	3 cut(s)	459, 595, 983
BtsI	GCAGTG	2 cut(s)	79, 484
BtsIMutI	CAGTG	4 cut(s)	79, 302, 484, 767
Cac8I	GCNNGC	3 cut(s)	127, 438, 825
Cfr13I	GGNCC	4 cut(s)	127, 442, 532, 979
CseI	GACGC	1 cut(s)	787
CsiI	ACCWGGT	1 cut(s)	503
Csp6I	GTAC	4 cut(s)	61, 114, 147, 565
CviAII	CATG	4 cut(s)	144, 163, 172, 559
CviQI	GTAC	4 cut(s)	61, 114, 147, 565
DdeI	CTNAG	4 cut(s)	206, 305, 730, 1016
DpnI	GATC	2 cut(s)	616, 801
DpnII	GATC	2 cut(s)	614, 799
Eam1104I	CTCTTC	2 cut(s)	272, 558
EarI	CTCTTC	2 cut(s)	272, 558
Eco130I	CCWWGG	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	196
Eco31I	GGTCTC	2 cut(s)	236, 308
Eco47I	GGWCC	3 cut(s)	442, 532, 979
Eco57I	CTGAAG	1 cut(s)	915
Eco81I	CCTNAGG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 308
EcoO109I	RGGNCCY	1 cut(s)	532
EcoO65I	GGTNACC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	7 cut(s)	135, 225, 414, 503, 516, 606, 949
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
Esp3I	CGTCTC	2 cut(s)	123, 770
FaeI	CATG	4 cut(s)	147, 166, 175, 562
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	3 cut(s)	545, 609, 652
FatI	CATG	4 cut(s)	143, 162, 171, 558
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	141, 683, 792, 881, 902
FokI	GGATG	3 cut(s)	466, 582, 970
Fsp4HI	GCNGC	5 cut(s)	141, 683, 792, 881, 902
FspBI	CTAG	3 cut(s)	494, 586, 988
GluI	GCNGC	5 cut(s)	141, 683, 792, 881, 902
GsaI	CCCAGC	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	104, 129, 196
HgaI	GACGC	1 cut(s)	787
Hin1II	CATG	4 cut(s)	147, 166, 175, 562
HinfI	GANTC	5 cut(s)	2, 330, 371, 622, 726
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	3 cut(s)	271, 445, 565
Hpy188I	TCNGA	6 cut(s)	209, 376, 511, 578, 775, 913
Hpy188III	TCNNGA	2 cut(s)	51, 424
Hpy8I	GTNNAC	3 cut(s)	271, 445, 565
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	4 cut(s)	60, 738, 757, 771
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	9 cut(s)	79, 175, 271, 327, 457, 484, 592, 685, 823
HpyF3I	CTNAG	4 cut(s)	206, 305, 730, 1016
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	147, 166, 175, 562
KflI	GGGWCCC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	614, 799
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	4 cut(s)	669, 778, 867, 913
LweI	GCATC	4 cut(s)	265, 444, 579, 639
MabI	ACCWGGT	1 cut(s)	503
MaeI	CTAG	3 cut(s)	494, 586, 988
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	399, 499
MalI	GATC	2 cut(s)	616, 801
MboI	GATC	2 cut(s)	614, 799
MboII	GAAGA	6 cut(s)	37, 289, 439, 545, 562, 921
MfeI	CAATTG	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	273, 972
MluCI	AATT	4 cut(s)	18, 419, 458, 920
MlyI	GAGTC	2 cut(s)	324, 631
MmeI	TCCRAC	1 cut(s)	753
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	1 cut(s)	662
MspR9I	CCNGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	2 cut(s)	614, 799
NlaIII	CATG	4 cut(s)	147, 166, 175, 562
NlaIV	GGNNCC	3 cut(s)	533, 534, 981
NmuCI	GTSAC	1 cut(s)	399
NspI	RCATGY	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	371, 726
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	5 cut(s)	142, 684, 793, 882, 903
PleI	GAGTC	2 cut(s)	324, 630
PpsI	GAGTC	2 cut(s)	324, 630
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	7 cut(s)	135, 225, 414, 503, 516, 606, 949
PspEI	GGTNACC	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	7 cut(s)	135, 225, 414, 503, 516, 606, 949
PspN4I	GGNNCC	3 cut(s)	533, 534, 981
PspPI	GGNCC	4 cut(s)	127, 442, 532, 979
PspPPI	RGGWCCY	1 cut(s)	532
PsrI	GAACNNNNNNTAC	2 cut(s)	906, 938
PstI	CTGCAG	1 cut(s)	687
RsaI	GTAC	4 cut(s)	62, 115, 148, 566
RsaNI	GTAC	4 cut(s)	61, 114, 147, 565
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	5 cut(s)	141, 683, 792, 881, 902
Sau3AI	GATC	2 cut(s)	614, 799
Sau96I	GGNCC	4 cut(s)	127, 442, 532, 979
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	2 cut(s)	324, 631
ScrFI	CCNGG	7 cut(s)	137, 227, 416, 505, 518, 608, 951
SduI	GDGCHC	2 cut(s)	273, 972
SexAI	ACCWGGT	1 cut(s)	503
SfaNI	GCATC	4 cut(s)	265, 444, 579, 639
SfcI	CTRYAG	3 cut(s)	155, 683, 753
SinI	GGWCC	3 cut(s)	442, 532, 979
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	49, 857
SmoI	CTYRAG	2 cut(s)	49, 857
Sse9I	AATT	4 cut(s)	18, 419, 458, 920
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	5 cut(s)	125, 140, 440, 869, 977
SspMI	CTAG	3 cut(s)	494, 586, 988
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	7 cut(s)	135, 225, 414, 503, 516, 606, 949
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	4 cut(s)	60, 738, 757, 771
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	259, 620, 812
TasI	AATT	4 cut(s)	18, 419, 458, 920
TatI	WGTACW	3 cut(s)	60, 146, 564
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	371, 726
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	4 cut(s)	86, 302, 491, 774
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	4 cut(s)	682, 791, 880, 901
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	3 cut(s)	633, 896, 1007
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	4 cut(s)	86, 302, 491, 774
Van91I	CCANNNNNTGG	1 cut(s)	607
VneI	GTGCAC	1 cut(s)	269
VpaK11BI	GGWCC	3 cut(s)	442, 532, 979
XagI	CCTNNNNNAGG	2 cut(s)	134, 308
XapI	RAATTY	2 cut(s)	18, 419
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XspI	CTAG	3 cut(s)	494, 586, 988
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.