AT3G09980

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013142
Physical Location & Seq
Forward (+)
3069090 .. 3071531
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09980.1

Sequence Viewer

Length: 537 bp
ATGAAGGAGATGCAGGCAATAGAGACGTCGCAGCCGACGACGGTGGCTCCGGCGGTGCATAGCCGACAATTGGGAGCTCAGTTGTCGGGAAGTATGAGTTTCAGCAGCCAAATGTCGAAGGAAGATGAGGAGATGTCTAGAACTGCGTTATCTGCGTTTAGAGCGAAAGAAGAAGAGATCGAGAAGAAGAAGATGGAGATTAGGGAAAGGGTTCAAGCTCAGCTTGGTCGTGTCGAAGAAGAGACTAAGCGTCTTGCTTTGATCCGTGAGGAACTTGAAGGATTAGCTGATCCCATGAGGAAAGAAGTTGCTATGGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGTTGGTGGGAGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

178

Amino Acids

20.59

Weight (kDa)

7.88

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 29 - 176 4.1e-75 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 256, 284
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 4 cut(s) 215, 278, 407, 415
AhdI GACNNNNNGTC 1 cut(s) 249
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 8 cut(s) 77, 218, 223, 287, 401, 442, 499, 508
AluI AGCT 8 cut(s) 77, 218, 223, 287, 401, 442, 499, 508
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 17, 236
AlwI GGATC 2 cut(s) 256, 284
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 3 cut(s) 31, 105, 439
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 439
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 43, 117, 451
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 17, 236
BfaI CTAG 1 cut(s) 138
BisI GCNGC 3 cut(s) 32, 106, 440
BlpI GCTNAGC 2 cut(s) 219, 509
BlsI GCNGC 3 cut(s) 33, 107, 441
Bme1390I CCNGG 1 cut(s) 451
BmeRI GACNNNNNGTC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 451
Bpu1102I GCTNAGC 2 cut(s) 219, 509
BsaHI GRCGYC 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 92, 233
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 43, 117, 451
BsgI GTGCAG 1 cut(s) 458
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 17, 236
BsmBI CGTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 177, 261, 289
Bsp1720I GCTNAGC 2 cut(s) 219, 509
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 91, 232
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 2 cut(s) 256, 284
BspQI GCTCTTC 1 cut(s) 498
BssMI GATC 3 cut(s) 177, 261, 289
BssNI GRCGYC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 43, 370
Bst6I CTCTTC 3 cut(s) 168, 234, 498
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 4 cut(s) 78, 219, 246, 509
BstKTI GATC 3 cut(s) 180, 264, 292
BstMAI GTCTC 2 cut(s) 17, 236
BstMBI GATC 3 cut(s) 177, 261, 289
BstMWI GCNNNNNNNGC 4 cut(s) 152, 161, 407, 505
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 43, 117, 451
BstXI CCANNNNNNTGG 1 cut(s) 457
BsuRI GGCC 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 295
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 4 cut(s) 78, 219, 246, 509
DpnI GATC 3 cut(s) 179, 263, 291
DpnII GATC 3 cut(s) 177, 261, 289
DriI GACNNNNNGTC 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 168, 234, 498
Eam1105I GACNNNNNGTC 1 cut(s) 249
EarI CTCTTC 3 cut(s) 168, 234, 498
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 1 cut(s) 298
FaiI YATR 7 cut(s) 60, 95, 296, 314, 366, 521, 530
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 387, 419
FatI CATG 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 32, 106, 440
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 3 cut(s) 32, 106, 440
FspBI CTAG 1 cut(s) 138
GluI GCNGC 3 cut(s) 32, 106, 440
HaeIII GGCC 1 cut(s) 363
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 298
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 2 cut(s) 332, 524
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 4 cut(s) 87, 138, 181, 404
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 3 cut(s) 31, 40, 43
HpyAV CCTTC 3 cut(s) 112, 272, 427
HpyCH4III ACNGT 2 cut(s) 43, 370
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 13, 58, 439
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 161, 407, 505
HpyF3I CTNAG 4 cut(s) 78, 219, 246, 509
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 3 cut(s) 177, 261, 289
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 2 cut(s) 52, 74
LpnPI CCDG 5 cut(s) 63, 412, 436, 463, 485
Lsp1109I GCAGC 3 cut(s) 43, 117, 451
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 26
MalI GATC 3 cut(s) 179, 263, 291
MboI GATC 3 cut(s) 177, 261, 289
MfeI CAATTG 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 68, 347
MnlI CCTC 3 cut(s) 121, 262, 291
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 1 cut(s) 350
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 451
MunI CAATTG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 4 cut(s) 152, 161, 407, 505
NdeII GATC 3 cut(s) 177, 261, 289
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 35
PctI GAATGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 332, 524
PkrI GCNGC 3 cut(s) 33, 107, 441
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 361
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 3 cut(s) 32, 106, 440
Sau3AI GATC 3 cut(s) 177, 261, 289
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 79
Sse9I AATT 2 cut(s) 68, 347
SsiI CCGC 1 cut(s) 53
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 449
TaaI ACNGT 2 cut(s) 43, 370
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 116, 180, 234
TasI AATT 2 cut(s) 68, 347
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 2 cut(s) 332, 524
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TseI GCWGC 3 cut(s) 31, 105, 439
TspDTI ATGAA 2 cut(s) 17, 506
TspGWI ACGGA 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 1 cut(s) 138
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.