AT3G52920

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013142
Physical Location & Seq
Forward (+)
19624278 .. 19626347
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52920.2

Sequence Viewer

Length: 543 bp
ATGACAACAACGAATGAAGCTACTACACAGCCTCCTCAGCAGATGATGAGCTTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCTGCTCTCTCTGCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGTGAAAGGGTTAAGGCTCAGCTTGGTCGTGTTGAGGAAGAGACTCGTCGTCTTGCTAGTATCCGCGAGGAGCTTGAGACAATGGCAGATCCCATGAGGAAGGAAGTTAATTGGGTGCGTAAGAAGATTGATAGCGTCAACAAAGAACTCAAACCATTAGGCTCTACTGTTCAAAAGAAGGAAAGGGAATACAAAGAAGCATTGGATACGTTCAACGAGAAGAATCGTGAGAAAGTTCAGCTGATCACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGAAGAAGCTGGATGAGCTAAGCAGGAGCATAGACACAGAGAGTGAATCTATCTCACAAGACAAGACCATACCAATCAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

180

Amino Acids

20.98

Weight (kDa)

6.53

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 21 - 162 3.5e-71 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 1 cut(s) 223
AclWI GGATC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 332, 373, 460
AhdI GACNNNNNGTC 1 cut(s) 207
AluBI AGCT 9 cut(s) 20, 51, 181, 232, 400, 412, 451, 466, 475
AluI AGCT 9 cut(s) 20, 51, 181, 232, 400, 412, 451, 466, 475
Alw26I GTCTC 2 cut(s) 194, 230
AlwI GGATC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 87
BbvCI CCTCAGC 2 cut(s) 36, 452
BccI CCATC 2 cut(s) 85, 415
BciVI GTATCC 2 cut(s) 230, 358
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 194, 230
BfaI CTAG 1 cut(s) 216
BfuI GTATCC 2 cut(s) 230, 358
BlpI GCTNAGC 2 cut(s) 177, 476
BmeRI GACNNNNNGTC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 2 cut(s) 36, 452
Bpu1102I GCTNAGC 2 cut(s) 177, 476
BpuEI CTTGAG 2 cut(s) 73, 254
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
BseGI GGATG 1 cut(s) 475
BseMII CTCAG 3 cut(s) 50, 191, 443
BseRI GAGGAG 2 cut(s) 24, 242
Bsh1236I CGCG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 438
BsmAI GTCTC 2 cut(s) 194, 230
BsmFI GGGAC 1 cut(s) 438
Bsp143I GATC 2 cut(s) 247, 402
Bsp1720I GCTNAGC 2 cut(s) 177, 476
BspACI CCGC 1 cut(s) 223
BspCNI CTCAG 3 cut(s) 49, 190, 444
BspFNI CGCG 1 cut(s) 225
BspPI GGATC 1 cut(s) 242
BssMI GATC 2 cut(s) 247, 402
Bst4CI ACNGT 2 cut(s) 328, 429
Bst6I CTCTTC 3 cut(s) 81, 137, 192
BstDEI CTNAG 4 cut(s) 36, 177, 452, 476
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 2 cut(s) 250, 405
BstMAI GTCTC 2 cut(s) 194, 230
BstMBI GATC 2 cut(s) 247, 402
BstMWI GCNNNNNNNGC 5 cut(s) 37, 101, 110, 119, 472
BstUI CGCG 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 1 cut(s) 247
BsuI GTATCC 2 cut(s) 230, 358
BtsCI GGATG 1 cut(s) 475
CseI GACGC 1 cut(s) 283
CviAII CATG 1 cut(s) 253
DdeI CTNAG 4 cut(s) 36, 177, 452, 476
DpnI GATC 2 cut(s) 249, 404
DpnII GATC 2 cut(s) 247, 402
DriI GACNNNNNGTC 1 cut(s) 207
Eam1104I CTCTTC 3 cut(s) 81, 137, 192
Eam1105I GACNNNNNGTC 1 cut(s) 207
EarI CTCTTC 3 cut(s) 81, 137, 192
FaeI CATG 1 cut(s) 256
FaiI YATR 3 cut(s) 254, 488, 527
FaqI GGGAC 1 cut(s) 438
FatI CATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 402
FokI GGATG 1 cut(s) 482
FspBI CTAG 1 cut(s) 216
HgaI GACGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 3 cut(s) 202, 382, 503
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 3 cut(s) 161, 386, 535
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 253, 331
HpyCH4III ACNGT 2 cut(s) 328, 429
HpyCH4IV ACGT 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 101, 110, 119, 472
HpyF3I CTNAG 4 cut(s) 36, 177, 452, 476
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 2 cut(s) 247, 402
LmnI GCTCC 2 cut(s) 229, 483
LpnPI CCDG 2 cut(s) 452, 466
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 368
MalI GATC 2 cut(s) 249, 404
MboI GATC 2 cut(s) 247, 402
MboII GAAGA 8 cut(s) 92, 98, 140, 154, 209, 295, 391, 472
MflI RGATCY 1 cut(s) 247
MluCI AATT 1 cut(s) 268
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 7 cut(s) 42, 45, 138, 187, 220, 249, 447
MseI TTAA 2 cut(s) 171, 267
MspA1I CMGCKG 1 cut(s) 400
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 5 cut(s) 37, 101, 110, 119, 472
NdeII GATC 2 cut(s) 247, 402
NlaIII CATG 1 cut(s) 256
PfeI GAWTC 2 cut(s) 382, 503
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 400
SaqAI TTAA 2 cut(s) 171, 267
Sau3AI GATC 2 cut(s) 247, 402
SchI GAGTC 1 cut(s) 196
SmlI CTYRAG 2 cut(s) 52, 233
SmoI CTYRAG 2 cut(s) 52, 233
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 328, 429
TaiI ACGT 1 cut(s) 371
TasI AATT 1 cut(s) 268
TfiI GAWTC 2 cut(s) 382, 503
Tru1I TTAA 2 cut(s) 171, 267
Tru9I TTAA 2 cut(s) 171, 267
TspDTI ATGAA 1 cut(s) 30
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.