RLG00000024083

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013142
Physical Location & Seq
Forward (+)
31611398 .. 31613258
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024083

Sequence Viewer

Length: 558 bp
ATGAGCAAGCAACGCCTCGGGGAGATGATGCAGACCATTGAGCAGGCTCCTCCTCAGCCACCTCCGCCGCAGTCGCAGTCGCAGCAACTGACCGTGCAGAACTCCGCCGGCTCTCTCAGCTTCAACAGTAACATGTCCAAGGAGGATGAGGAGATGTCCAGGTCGGCTCTCTCCACTTTCAGGGCCAAGGAGGAGGAGATCGAGAGGAAGAAGCTCGAGGTCAGAGAGAAGGTTCAGGCCCAGTTGGGTCGTGTTGAGGAAGAGACCAAGCGCTTGGCTACCATTCGTGAGGAGCTTGAAGGGCTTTCAGATCCAATGAGGAAGGAAGTTTCACTGGTTCGTAAGAAGATCGATACAGTTAACAAGGAGTTAAAGCCACTGGGACAAAGCTGCCAGAAGAAGGAAAAAGAATACAGAGAAGCACTTGAGGCTTTCAACGAAAAGAACAGGGAAAAAGTACAGCTCATTACAAAACTGATGGAGCTGGTGGGTGAAAGTGAGAAGATGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACATTGATTCAATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

186

Amino Acids

21.43

Weight (kDa)

7.73

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 37 - 183 7.5e-76 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 65, 68, 105
AclWI GGATC 1 cut(s) 305
AfaI GTAC 1 cut(s) 459
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 180, 400
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 4 cut(s) 124, 299, 436, 549
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 8 cut(s) 120, 214, 295, 390, 463, 484, 520, 529
AluI AGCT 8 cut(s) 120, 214, 295, 390, 463, 484, 520, 529
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 2 cut(s) 17, 215
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 2 cut(s) 183, 237
ApeKI GCWGC 2 cut(s) 82, 390
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 183, 238
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 2 cut(s) 17, 215
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 94, 377
BccI CCATC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 274
BisI GCNGC 3 cut(s) 68, 83, 391
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 3 cut(s) 69, 84, 392
Bme1390I CCNGG 1 cut(s) 160
BmeT110I CYCGRG 2 cut(s) 17, 215
BmgT120I GGNCC 2 cut(s) 183, 238
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 2 cut(s) 235, 389
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 2 cut(s) 235, 389
BpmI CTGGAG 1 cut(s) 542
Bpu10I CCTNAGC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 446
Bsa29I ATCGAT 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 16, 138, 186
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 400
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 3 cut(s) 241, 339, 384
BseBI CCWGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 16, 138, 186
BseGI GGATG 2 cut(s) 151, 516
BseLI CCNNNNNNNGG 2 cut(s) 180, 400
BseMII CTCAG 3 cut(s) 68, 130, 521
BseNI ACTGG 3 cut(s) 241, 339, 384
BseRI GAGGAG 7 cut(s) 39, 42, 164, 206, 209, 305, 539
BseXI GCAGC 2 cut(s) 94, 377
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 2 cut(s) 185, 239
BshVI ATCGAT 1 cut(s) 351
BsiHKCI CYCGRG 2 cut(s) 17, 215
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 180, 400
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 2 cut(s) 185, 239
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 2 cut(s) 17, 215
Bsp143I GATC 3 cut(s) 198, 310, 348
Bsp1720I GCTNAGC 1 cut(s) 530
BspACI CCGC 3 cut(s) 65, 68, 105
BspANI GGCC 2 cut(s) 185, 239
BspCNI CTCAG 3 cut(s) 67, 129, 522
BspDI ATCGAT 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 3 cut(s) 241, 339, 384
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 16, 138, 186
BssMI GATC 3 cut(s) 198, 310, 348
BssT1I CCWWGG 2 cut(s) 138, 186
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 94, 128, 358
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 8, 45, 109
BstDEI CTNAG 3 cut(s) 54, 116, 530
BstF5I GGATG 2 cut(s) 151, 516
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 3 cut(s) 201, 313, 351
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 3 cut(s) 198, 310, 348
BstMWI GCNNNNNNNGC 8 cut(s) 12, 64, 73, 82, 117, 301, 428, 526
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 94, 377
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 310
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 2 cut(s) 185, 239
BsuTUI ATCGAT 1 cut(s) 351
BtsCI GGATG 2 cut(s) 151, 516
BtsIMutI CAGTG 2 cut(s) 332, 377
Cac8I GCNNGC 3 cut(s) 8, 45, 109
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 183, 238
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 1 cut(s) 458
CviAII CATG 1 cut(s) 133
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 3 cut(s) 54, 116, 530
DpnI GATC 3 cut(s) 200, 312, 350
DpnII GATC 3 cut(s) 198, 310, 348
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 2 cut(s) 54, 94
Eco130I CCWWGG 2 cut(s) 138, 186
Eco31I GGTCTC 1 cut(s) 257
Eco47III AGCGCT 1 cut(s) 272
Eco88I CYCGRG 2 cut(s) 17, 215
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 2 cut(s) 138, 186
ErhI CCWWGG 2 cut(s) 138, 186
FaeI CATG 1 cut(s) 136
FaiI YATR 1 cut(s) 134
FaqI GGGAC 1 cut(s) 396
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 68, 83, 391
FokI GGATG 2 cut(s) 158, 523
Fsp4HI GCNGC 3 cut(s) 68, 83, 391
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 68, 83, 391
GsuI CTGGAG 1 cut(s) 542
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 2 cut(s) 185, 239
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 273
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 1 cut(s) 545
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 224, 310
Hpy188III TCNNGA 2 cut(s) 202, 287
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 4 cut(s) 223, 293, 316, 394
HpyCH4III ACNGT 3 cut(s) 94, 128, 358
HpyCH4V TGCA 3 cut(s) 31, 97, 553
HpyF10VI GCNNNNNNNGC 8 cut(s) 12, 64, 73, 82, 117, 301, 428, 526
HpyF3I CTNAG 3 cut(s) 54, 116, 530
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 271
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 3 cut(s) 198, 310, 348
LmnI GCTCC 4 cut(s) 52, 292, 481, 526
Lsp1109I GCAGC 2 cut(s) 94, 377
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 128
MalI GATC 3 cut(s) 200, 312, 350
MboI GATC 3 cut(s) 198, 310, 348
MboII GAAGA 6 cut(s) 220, 272, 358, 409, 514, 526
MflI RGATCY 1 cut(s) 310
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 2 cut(s) 360, 371
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 8 cut(s) 12, 64, 73, 82, 117, 301, 428, 526
NaeI GCCGGC 1 cut(s) 109
NdeII GATC 3 cut(s) 198, 310, 348
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 136
PaeR7I CTCGAG 1 cut(s) 215
PciI ACATGT 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 3 cut(s) 69, 84, 392
PscI ACATGT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 2 cut(s) 183, 238
PspXI VCTCGAGB 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
SaqAI TTAA 2 cut(s) 360, 371
SatI GCNGC 3 cut(s) 68, 83, 391
Sau3AI GATC 3 cut(s) 198, 310, 348
Sau96I GGNCC 2 cut(s) 183, 238
ScrFI CCNGG 1 cut(s) 160
SfaNI GCATC 1 cut(s) 18
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 215, 425
SmoI CTYRAG 2 cut(s) 215, 425
SsiI CCGC 3 cut(s) 65, 68, 105
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 2 cut(s) 138, 186
TaaI ACNGT 3 cut(s) 94, 128, 358
TaqI TCGA 3 cut(s) 201, 216, 351
TatI WGTACW 1 cut(s) 457
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 2 cut(s) 360, 371
Tru9I TTAA 2 cut(s) 360, 371
TscAI CASTG 2 cut(s) 339, 384
TseI GCWGC 2 cut(s) 82, 390
TspDTI ATGAA 1 cut(s) 527
TspRI CASTG 2 cut(s) 339, 384
XceI RCATGY 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.