Prupe.7G115700_v2.0.a1

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013142
Physical Location & Seq
Forward (+)
14091484 .. 14093947
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G115700.1

Sequence Viewer

Length: 516 bp
ATGATGCAGACAGAGCAGGCTCAGCCACAGCAGCAGCAGCAGCAGCTGGTGGTGCAGAACTCAGCTGGAAGCCTCAGTTTCAACAGCAATCTCTCCAAGGAGGATGAAGAGATGTCAAGGTCGGCTCTTTCCACTTTCAGAGCCAAAGAGGAGGAGATCGAGAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAAGCCCAGTTGGGTCGTGTTGAAGAGGAGACCAAGCGTTTGGCCACTATTCGTGAGGAGCTTGAAGGCCTTGCAGATCCAATGAGGAAGGAAGTTTCACAGGTCCGTAAGAAGATCGATTCAATTAACAAAGAGTTAAAGCCACTAGGACACACCTGCCAGAAGAAGGAAAAAGAATACAGAGACGCGCTTGAGGCTTTCAATGAAAAGAACAGGGAAAAAGTGCAGCTTATTACAAAACTAATGGAGCTGGTGAGTGAAAGTGAGAAGTTGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACGTAGATTCCTTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

172

Amino Acids

19.97

Weight (kDa)

6.68

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 356
AccII CGCG 1 cut(s) 380
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 6 cut(s) 82, 194, 215, 257, 315, 394
AloI GAACNNNNNNTCC 1 cut(s) 488
AluBI AGCT 7 cut(s) 46, 65, 253, 421, 442, 478, 487
AluI AGCT 7 cut(s) 46, 65, 253, 421, 442, 478, 487
Alw26I GTCTC 2 cut(s) 215, 369
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 2 cut(s) 234, 259
ApeKI GCWGC 6 cut(s) 31, 34, 37, 40, 43, 418
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 236
BbvI GCAGC 6 cut(s) 43, 46, 49, 52, 55, 430
BccI CCATC 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 215, 369
BfaI CTAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 6 cut(s) 32, 35, 38, 41, 44, 419
BlpI GCTNAGC 2 cut(s) 21, 488
BlsI GCNGC 6 cut(s) 33, 36, 39, 42, 45, 420
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 500
Bpu1102I GCTNAGC 2 cut(s) 21, 488
BpuEI CTTGAG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 109, 474
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 4 cut(s) 35, 75, 88, 479
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 5 cut(s) 164, 167, 233, 263, 497
BseXI GCAGC 6 cut(s) 43, 46, 49, 52, 55, 430
BsgI GTGCAG 2 cut(s) 74, 437
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 2 cut(s) 236, 261
BshVI ATCGAT 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 215, 369
BsmBI CGTCTC 1 cut(s) 369
BsnI GGCC 2 cut(s) 236, 261
Bso31I GGTCTC 1 cut(s) 215
Bsp143I GATC 3 cut(s) 156, 268, 306
Bsp1720I GCTNAGC 2 cut(s) 21, 488
BspANI GGCC 2 cut(s) 236, 261
BspCNI CTCAG 4 cut(s) 34, 74, 87, 480
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 1 cut(s) 380
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 156, 268, 306
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 513
Bst6I CTCTTC 2 cut(s) 102, 210
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 4 cut(s) 21, 61, 74, 488
BstF5I GGATG 2 cut(s) 109, 474
BstFNI CGCG 1 cut(s) 380
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 3 cut(s) 159, 271, 309
BstMAI GTCTC 2 cut(s) 215, 369
BstMBI GATC 3 cut(s) 156, 268, 306
BstMWI GCNNNNNNNGC 9 cut(s) 13, 22, 31, 37, 40, 43, 52, 386, 484
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 6 cut(s) 43, 46, 49, 52, 55, 430
BstX2I RGATCY 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 2 cut(s) 236, 261
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 2 cut(s) 109, 474
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 295
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 386
DdeI CTNAG 4 cut(s) 21, 61, 74, 488
DpnI GATC 3 cut(s) 158, 270, 308
DpnII GATC 3 cut(s) 156, 268, 306
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 102, 210
EarI CTCTTC 2 cut(s) 102, 210
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 369
FalI AAGNNNNNCTT 2 cut(s) 405, 437
Fnu4HI GCNGC 6 cut(s) 32, 35, 38, 41, 44, 419
FokI GGATG 2 cut(s) 116, 481
Fsp4HI GCNGC 6 cut(s) 32, 35, 38, 41, 44, 419
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 381
GluI GCNGC 6 cut(s) 32, 35, 38, 41, 44, 419
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 2 cut(s) 236, 261
HgaI GACGC 1 cut(s) 386
HhaI GCGC 1 cut(s) 382
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HinfI GANTC 2 cut(s) 311, 503
HphI GGTGA 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 140, 182
Hpy188III TCNNGA 2 cut(s) 160, 245
HpyAV CCTTC 3 cut(s) 251, 274, 352
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 4 cut(s) 7, 55, 266, 418
HpyF10VI GCNNNNNNNGC 9 cut(s) 13, 22, 31, 37, 40, 43, 52, 386, 484
HpyF3I CTNAG 4 cut(s) 21, 61, 74, 488
HpySE526I ACGT 1 cut(s) 498
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 156, 268, 306
LmnI GCTCC 3 cut(s) 250, 439, 484
Lsp1109I GCAGC 6 cut(s) 43, 46, 49, 52, 55, 430
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 498
MalI GATC 3 cut(s) 158, 270, 308
MboI GATC 3 cut(s) 156, 268, 306
MboII GAAGA 7 cut(s) 119, 178, 181, 227, 316, 367, 484
MflI RGATCY 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 236
Mox20I TGGCCA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 189
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 318, 329
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 2 cut(s) 46, 65
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 9 cut(s) 13, 22, 31, 37, 40, 43, 52, 386, 484
NdeII GATC 3 cut(s) 156, 268, 306
PaqCI CACCTGC 1 cut(s) 356
PceI AGGCCT 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 311, 503
PkrI GCNGC 6 cut(s) 33, 36, 39, 42, 45, 420
PspPI GGNCC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 2 cut(s) 46, 65
SaqAI TTAA 2 cut(s) 318, 329
SatI GCNGC 6 cut(s) 32, 35, 38, 41, 44, 419
Sau3AI GATC 3 cut(s) 156, 268, 306
Sau96I GGNCC 1 cut(s) 295
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 1 cut(s) 315
SseBI AGGCCT 1 cut(s) 261
SspMI CTAG 1 cut(s) 338
StuI AGGCCT 1 cut(s) 261
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 513
TaiI ACGT 1 cut(s) 501
TaqI TCGA 2 cut(s) 159, 309
TasI AATT 1 cut(s) 315
TfiI GAWTC 2 cut(s) 311, 503
Tru1I TTAA 2 cut(s) 318, 329
Tru9I TTAA 2 cut(s) 318, 329
TseI GCWGC 6 cut(s) 31, 34, 37, 40, 43, 418
TspDTI ATGAA 3 cut(s) 120, 411, 485
TspGWI ACGGA 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.