Rroxscaffold_6G00408970

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013142
Physical Location & Seq
Forward (+)
31498951 .. 31501447
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408970.1

Sequence Viewer

Length: 690 bp
ATGAGCAAGCAACGCCTCGGGGAGATGATGCAGACCATTGAGCAGGCTCCTCCTCAGCCACCTCCGCCGCAGATGCAGTCGCAGTCGCAGCAACTGACCGTGCAGAACTCCGCCGGCTCTCTCAGCTTCAACAGTAACATGTCCAAGGAGGATGAGGAGATGTCCAGGTCGGCTCTCTCCACTTTCAGGGCCAAGGAGGAGGAGATCGAGAGGAAGAAGCTCGAGGTCAGAGAGAAGGTTCAGGCCCAGTTGGGTCGTGTTGAGGAAGAGACCAAGCGCTTGGCTACCATTCGTGAGGAGCTTGAAGGGCTTTCAGATCCAATGAGGAAGGAAGTTTCACTGGTTCGGAAGAAGATCGATACAGTTAACAAGGAGTTAAAGCCACTGGGACAAAGCTGCCAGAAGAAGGAAAAAGAATACAGAGAAGCACTTGAGGCTTTCAACGAAAAGAACAGGGAAAAAGTACAGCTCATTACAAAACTGATGGAGGGTATCTGGGTAAGACTTTTGGGTTTAGGATTCTTGTGGAAAGATGATTTGATGGAAGCTTGGGAAGGGGTAGTTGTGAAAATCTGGATTCTTGTGGAAGATAATTTGATGGAAGCTTGGAAAGGGCTGGTGGGTGAAAGTGAGAAGATGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACATTGATTCAATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

229

Amino Acids

26.6

Weight (kDa)

5.68

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 39 - 163 9.5e-64 Transcriptional activator
Transcrip_act PF04949 199 - 227 2e-06 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 65, 68, 111
AclWI GGATC 1 cut(s) 311
AfaI GTAC 1 cut(s) 465
AfeI AGCGCT 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 186, 406
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 4 cut(s) 130, 305, 442, 681
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 9 cut(s) 126, 220, 301, 396, 469, 548, 605, 652, 661
AluI AGCT 9 cut(s) 126, 220, 301, 396, 469, 548, 605, 652, 661
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 2 cut(s) 17, 221
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 2 cut(s) 189, 243
ApeKI GCWGC 2 cut(s) 88, 396
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 189, 244
AsuHPI GGTGA 1 cut(s) 635
AvaI CYCGRG 2 cut(s) 17, 221
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 100, 383
BccI CCATC 3 cut(s) 478, 535, 592
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 3 cut(s) 68, 89, 397
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 3 cut(s) 69, 90, 398
Bme1390I CCNGG 1 cut(s) 166
BmeT110I CYCGRG 2 cut(s) 17, 221
BmgT120I GGNCC 2 cut(s) 189, 244
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 2 cut(s) 241, 395
BmsI GCATC 2 cut(s) 18, 63
BmuI ACTGGG 2 cut(s) 241, 395
BpmI CTGGAG 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 452
Bsa29I ATCGAT 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 16, 144, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 406
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 3 cut(s) 247, 345, 390
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 16, 144, 192
BseGI GGATG 2 cut(s) 157, 648
BseLI CCNNNNNNNGG 2 cut(s) 186, 406
BseMII CTCAG 3 cut(s) 68, 136, 653
BseNI ACTGG 3 cut(s) 247, 345, 390
BseRI GAGGAG 7 cut(s) 39, 42, 170, 212, 215, 311, 671
BseXI GCAGC 2 cut(s) 100, 383
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 2 cut(s) 191, 245
BshVI ATCGAT 1 cut(s) 357
BsiHKCI CYCGRG 2 cut(s) 17, 221
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 186, 406
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 2 cut(s) 191, 245
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 2 cut(s) 17, 221
Bsp143I GATC 3 cut(s) 204, 316, 354
Bsp1720I GCTNAGC 1 cut(s) 662
BspACI CCGC 3 cut(s) 65, 68, 111
BspANI GGCC 2 cut(s) 191, 245
BspCNI CTCAG 3 cut(s) 67, 135, 654
BspDI ATCGAT 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 3 cut(s) 247, 345, 390
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 16, 144, 192
BssMI GATC 3 cut(s) 204, 316, 354
BssT1I CCWWGG 2 cut(s) 144, 192
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 3 cut(s) 100, 134, 364
Bst6I CTCTTC 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 8, 45, 115
BstDEI CTNAG 3 cut(s) 54, 122, 662
BstF5I GGATG 2 cut(s) 157, 648
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 207, 319, 357
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 3 cut(s) 204, 316, 354
BstMWI GCNNNNNNNGC 8 cut(s) 12, 64, 73, 88, 123, 307, 434, 658
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 100, 383
BstX2I RGATCY 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 2 cut(s) 191, 245
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 2 cut(s) 157, 648
BtsIMutI CAGTG 2 cut(s) 338, 383
Cac8I GCNNGC 3 cut(s) 8, 45, 115
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 189, 244
ClaI ATCGAT 1 cut(s) 357
Csp6I GTAC 1 cut(s) 464
CviAII CATG 1 cut(s) 139
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 3 cut(s) 54, 122, 662
DpnI GATC 3 cut(s) 206, 318, 356
DpnII GATC 3 cut(s) 204, 316, 354
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 2 cut(s) 54, 100
Eco130I CCWWGG 2 cut(s) 144, 192
Eco31I GGTCTC 1 cut(s) 263
Eco47III AGCGCT 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 17, 221
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 144, 192
ErhI CCWWGG 2 cut(s) 144, 192
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FaqI GGGAC 1 cut(s) 402
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 68, 89, 397
FokI GGATG 2 cut(s) 164, 655
Fsp4HI GCNGC 3 cut(s) 68, 89, 397
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 68, 89, 397
GsuI CTGGAG 1 cut(s) 674
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 2 cut(s) 191, 245
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 2 cut(s) 546, 603
HinfI GANTC 3 cut(s) 519, 577, 677
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 230, 316, 348
Hpy188III TCNNGA 3 cut(s) 208, 293, 574
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 5 cut(s) 229, 299, 322, 400, 548
HpyCH4III ACNGT 3 cut(s) 100, 134, 364
HpyCH4V TGCA 4 cut(s) 31, 76, 103, 685
HpyF10VI GCNNNNNNNGC 8 cut(s) 12, 64, 73, 88, 123, 307, 434, 658
HpyF3I CTNAG 3 cut(s) 54, 122, 662
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 277
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 204, 316, 354
LmnI GCTCC 3 cut(s) 52, 298, 658
Lsp1109I GCAGC 2 cut(s) 100, 383
LweI GCATC 2 cut(s) 18, 63
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 206, 318, 356
MboI GATC 3 cut(s) 204, 316, 354
MboII GAAGA 8 cut(s) 226, 278, 361, 364, 415, 599, 646, 658
MflI RGATCY 1 cut(s) 316
MluCI AATT 1 cut(s) 592
MroNI GCCGGC 1 cut(s) 113
MseI TTAA 2 cut(s) 366, 377
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 8 cut(s) 12, 64, 73, 88, 123, 307, 434, 658
NaeI GCCGGC 1 cut(s) 115
NdeII GATC 3 cut(s) 204, 316, 354
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 221
PciI ACATGT 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 519, 577, 677
PkrI GCNGC 3 cut(s) 69, 90, 398
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 2 cut(s) 189, 244
PspXI VCTCGAGB 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SaqAI TTAA 2 cut(s) 366, 377
SatI GCNGC 3 cut(s) 68, 89, 397
Sau3AI GATC 3 cut(s) 204, 316, 354
Sau96I GGNCC 2 cut(s) 189, 244
ScrFI CCNGG 1 cut(s) 166
SfaNI GCATC 2 cut(s) 18, 63
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 221, 431
SmoI CTYRAG 2 cut(s) 221, 431
Sse9I AATT 1 cut(s) 592
SsiI CCGC 3 cut(s) 65, 68, 111
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 144, 192
TaaI ACNGT 3 cut(s) 100, 134, 364
TaqI TCGA 3 cut(s) 207, 222, 357
TasI AATT 1 cut(s) 592
TatI WGTACW 1 cut(s) 463
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 3 cut(s) 519, 577, 677
Tru1I TTAA 2 cut(s) 366, 377
Tru9I TTAA 2 cut(s) 366, 377
TscAI CASTG 2 cut(s) 345, 390
TseI GCWGC 2 cut(s) 88, 396
TspDTI ATGAA 1 cut(s) 659
TspRI CASTG 2 cut(s) 345, 390
XceI RCATGY 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.