Rh3AG176900

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013142
Physical Location & Seq
Reverse (-)
16516072 .. 16518495
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG176900.1

Sequence Viewer

Length: 564 bp
ATGAGCAAGCAACGCCTCGGGGAGATGATGCAGACCATTGAGCAGGCTCCTCCTCAGCCGCCTCCGCCGCAGACGCAGTCGCAGTCGCAGCAACTGACCGTGCAGAACTCCGCCGGCTCTCTCAGCTTCAACAGTAACATGTCCAAGGAGGATGAGGAGATGTCCAGGTCGGCTCTCTCCACTTTCAGGGCCAAGGAGGAGGAGATCGAGAGGAAGAAGCTCGAGGTCAGAGAGAAGGTTCAGGCCCAGTTGGGTCGTGTTGAGGAAGAGACCAAGCGCTTGGCTACCATTCGTGAGGAGCTTGAAGGGCTTTCAGATCCAATGAGGAAGGAGGTTTCACTGGTTCGTAAGAAGATCGATACAGTTAACAAGGAGTTAAAGCCACTGGGACAAAGCTGCCAGAAGAAGGAAAAAGAATACAGAGAAGCACTTGAGGCTTTCAACGAAAAGAACAGGGAAAAAGTACAGCTCATTACAAAACTGATGGAGCTGGTGGGTGAAAGTGAGAAGATGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACATTGATTCAATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

187

Amino Acids

21.66

Weight (kDa)

7.73

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 39 - 185 7.8e-76 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 59, 65, 68, 111
AclWI GGATC 1 cut(s) 311
AfaI GTAC 1 cut(s) 465
AfeI AGCGCT 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 186, 406
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 4 cut(s) 130, 305, 442, 555
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 8 cut(s) 126, 220, 301, 396, 469, 490, 526, 535
AluI AGCT 8 cut(s) 126, 220, 301, 396, 469, 490, 526, 535
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 2 cut(s) 17, 221
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 2 cut(s) 189, 243
ApeKI GCWGC 2 cut(s) 88, 396
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 189, 244
AsuHPI GGTGA 1 cut(s) 509
AvaI CYCGRG 2 cut(s) 17, 221
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 100, 383
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 4 cut(s) 59, 68, 89, 397
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 4 cut(s) 60, 69, 90, 398
Bme1390I CCNGG 1 cut(s) 166
BmeT110I CYCGRG 2 cut(s) 17, 221
BmgT120I GGNCC 2 cut(s) 189, 244
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 2 cut(s) 241, 395
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 2 cut(s) 241, 395
BpmI CTGGAG 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 452
Bsa29I ATCGAT 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 16, 144, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 406
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 3 cut(s) 247, 345, 390
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 16, 144, 192
BseGI GGATG 2 cut(s) 157, 522
BseLI CCNNNNNNNGG 2 cut(s) 186, 406
BseMII CTCAG 3 cut(s) 68, 136, 527
BseNI ACTGG 3 cut(s) 247, 345, 390
BseRI GAGGAG 7 cut(s) 39, 42, 170, 212, 215, 311, 545
BseXI GCAGC 2 cut(s) 100, 383
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 2 cut(s) 191, 245
BshVI ATCGAT 1 cut(s) 357
BsiHKCI CYCGRG 2 cut(s) 17, 221
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 186, 406
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 2 cut(s) 191, 245
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 2 cut(s) 17, 221
Bsp143I GATC 3 cut(s) 204, 316, 354
Bsp1720I GCTNAGC 1 cut(s) 536
BspACI CCGC 4 cut(s) 59, 65, 68, 111
BspANI GGCC 2 cut(s) 191, 245
BspCNI CTCAG 3 cut(s) 67, 135, 528
BspDI ATCGAT 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 3 cut(s) 247, 345, 390
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 16, 144, 192
BssMI GATC 3 cut(s) 204, 316, 354
BssT1I CCWWGG 2 cut(s) 144, 192
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 3 cut(s) 100, 134, 364
Bst6I CTCTTC 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 8, 45, 115
BstDEI CTNAG 3 cut(s) 54, 122, 536
BstF5I GGATG 2 cut(s) 157, 522
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 207, 319, 357
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 3 cut(s) 204, 316, 354
BstMWI GCNNNNNNNGC 9 cut(s) 12, 64, 67, 73, 88, 123, 307, 434, 532
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 100, 383
BstX2I RGATCY 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 2 cut(s) 191, 245
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 2 cut(s) 157, 522
BtsIMutI CAGTG 2 cut(s) 338, 383
Cac8I GCNNGC 3 cut(s) 8, 45, 115
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 189, 244
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 464
CviAII CATG 1 cut(s) 139
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 3 cut(s) 54, 122, 536
DpnI GATC 3 cut(s) 206, 318, 356
DpnII GATC 3 cut(s) 204, 316, 354
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 2 cut(s) 54, 100
Eco130I CCWWGG 2 cut(s) 144, 192
Eco31I GGTCTC 1 cut(s) 263
Eco47III AGCGCT 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 17, 221
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 144, 192
ErhI CCWWGG 2 cut(s) 144, 192
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FaqI GGGAC 1 cut(s) 402
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 59, 68, 89, 397
FokI GGATG 2 cut(s) 164, 529
Fsp4HI GCNGC 4 cut(s) 59, 68, 89, 397
GlaI GCGC 1 cut(s) 278
GluI GCNGC 4 cut(s) 59, 68, 89, 397
GsuI CTGGAG 1 cut(s) 548
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 2 cut(s) 191, 245
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 551
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 2 cut(s) 230, 316
Hpy188III TCNNGA 2 cut(s) 208, 293
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 4 cut(s) 229, 299, 322, 400
HpyCH4III ACNGT 3 cut(s) 100, 134, 364
HpyCH4V TGCA 3 cut(s) 31, 103, 559
HpyF10VI GCNNNNNNNGC 9 cut(s) 12, 64, 67, 73, 88, 123, 307, 434, 532
HpyF3I CTNAG 3 cut(s) 54, 122, 536
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 277
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 204, 316, 354
LmnI GCTCC 4 cut(s) 52, 298, 487, 532
Lsp1109I GCAGC 2 cut(s) 100, 383
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 206, 318, 356
MboI GATC 3 cut(s) 204, 316, 354
MboII GAAGA 6 cut(s) 226, 278, 364, 415, 520, 532
MflI RGATCY 1 cut(s) 316
MroNI GCCGGC 1 cut(s) 113
MseI TTAA 2 cut(s) 366, 377
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 9 cut(s) 12, 64, 67, 73, 88, 123, 307, 434, 532
NaeI GCCGGC 1 cut(s) 115
NdeII GATC 3 cut(s) 204, 316, 354
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 221
PciI ACATGT 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 551
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 4 cut(s) 60, 69, 90, 398
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 2 cut(s) 189, 244
PspXI VCTCGAGB 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 316
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SaqAI TTAA 2 cut(s) 366, 377
SatI GCNGC 4 cut(s) 59, 68, 89, 397
Sau3AI GATC 3 cut(s) 204, 316, 354
Sau96I GGNCC 2 cut(s) 189, 244
ScrFI CCNGG 1 cut(s) 166
SfaNI GCATC 1 cut(s) 18
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 221, 431
SmoI CTYRAG 2 cut(s) 221, 431
SsiI CCGC 4 cut(s) 59, 65, 68, 111
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 144, 192
TaaI ACNGT 3 cut(s) 100, 134, 364
TaqI TCGA 3 cut(s) 207, 222, 357
TatI WGTACW 1 cut(s) 463
TauI GCSGC 2 cut(s) 61, 70
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 2 cut(s) 366, 377
Tru9I TTAA 2 cut(s) 366, 377
TscAI CASTG 2 cut(s) 345, 390
TseI GCWGC 2 cut(s) 88, 396
TspDTI ATGAA 1 cut(s) 533
TspRI CASTG 2 cut(s) 345, 390
Tth111I GACNNNGTC 1 cut(s) 76
XceI RCATGY 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.