FvH4_6g18110

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013142
Physical Location & Seq
Reverse (-)
11895877 .. 11898285
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18110.t1

Sequence Viewer

Length: 570 bp
ATGAGCAAGCAACGCCTCGGTGAGATGATGCAGTCCATCGAGCAGGCTCCTCCTCCTCCTCCGACTGCGCCTGCTCCGCCGCAGCATCAGCTGGCGGTGCAGAACTCTGCTGGGTCTCTGAGCTTCAATAGTAACCTGTCCAAGGAGGATGAGGAGATGTCCAGGTCGGCTCTCTCCACTTTCAGAGCCAAGGAGGAAGAGATCGAGAGGAAGAAGATGGAGGTCAGAGAGAAGGTTCAAGCTCAATTGGGTCGTGTTGAGGAAGAGACCAAGCGCTTGGCTACCATTCGTGAGGAGCTTGAAGGGCTTTCAGATCCAATGAGGAAGGAAGTTTCAGCGGTCCGTAAGAAGATTGATACAGTTAACAAGGAGTTAAAGCCACTGGGACAAAGCTGCCAGAAGAAGGAAAGAGAATACAAAGAAGCACTTGAGGCTTTCAACGAGAAGAACAGGGAAAAAGTACAGCTCATCACAAAGCTAATGGAGTCTATGCAGCTGGTGGGCGAAAGTGAGAAGATGAGGATGAAGAAGCTTGAGGAGCTGAGCAAGAACGTTGATTCAATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

190

Amino Acids

21.69

Weight (kDa)

7.75

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 38 - 187 1.3e-73 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 77, 80, 95, 338
AclI AACGTT 1 cut(s) 552
AclWI GGATC 1 cut(s) 308
AfaI GTAC 1 cut(s) 462
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 142, 403
AgsI TTSAA 5 cut(s) 127, 239, 302, 439, 561
AjnI CCWGG 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 120, 260
AlwI GGATC 1 cut(s) 308
Aor51HI AGCGCT 1 cut(s) 275
ApeKI GCWGC 3 cut(s) 82, 393, 493
AspLEI GCGC 2 cut(s) 70, 276
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 340
BbvI GCAGC 3 cut(s) 94, 380, 505
BccI CCATC 2 cut(s) 44, 211
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 120, 260
BfoI RGCGCY 1 cut(s) 277
BisI GCNGC 4 cut(s) 80, 83, 394, 494
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 4 cut(s) 81, 84, 395, 495
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 2 cut(s) 18, 94
BmuI ACTGGG 1 cut(s) 392
Bpu1102I GCTNAGC 1 cut(s) 542
BpuEI CTTGAG 2 cut(s) 449, 554
BsaI GGTCTC 2 cut(s) 120, 260
BsaJI CCNNGG 3 cut(s) 16, 141, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 403
Bse1I ACTGG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 3 cut(s) 16, 141, 189
BseGI GGATG 2 cut(s) 154, 528
BseLI CCNNNNNNNGG 2 cut(s) 142, 403
BseMII CTCAG 2 cut(s) 110, 533
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 7 cut(s) 39, 42, 45, 48, 167, 308, 551
BseXI GCAGC 3 cut(s) 94, 380, 505
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 142, 403
BsmAI GTCTC 2 cut(s) 120, 260
BsmFI GGGAC 1 cut(s) 399
Bso31I GGTCTC 2 cut(s) 120, 260
Bsp143I GATC 2 cut(s) 201, 313
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 4 cut(s) 77, 80, 95, 338
BspCNI CTCAG 2 cut(s) 111, 534
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 308
BspTNI GGTCTC 2 cut(s) 120, 260
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 3 cut(s) 16, 141, 189
BssMI GATC 2 cut(s) 201, 313
BssT1I CCWWGG 2 cut(s) 141, 189
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 192, 258
BstC8I GCNNGC 4 cut(s) 8, 45, 72, 93
BstDEI CTNAG 2 cut(s) 119, 542
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 154, 528
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 2 cut(s) 70, 276
BstKTI GATC 2 cut(s) 204, 316
BstMAI GTCTC 2 cut(s) 120, 260
BstMBI GATC 2 cut(s) 201, 313
BstMWI GCNNNNNNNGC 7 cut(s) 12, 76, 88, 97, 304, 431, 538
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 3 cut(s) 94, 380, 505
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 313
BtsCI GGATG 2 cut(s) 154, 528
BtsIMutI CAGTG 1 cut(s) 380
Cac8I GCNNGC 4 cut(s) 8, 45, 72, 93
CfoI GCGC 2 cut(s) 70, 276
Cfr13I GGNCC 1 cut(s) 340
CpoI CGGWCCG 1 cut(s) 340
Csp6I GTAC 1 cut(s) 461
CspI CGGWCCG 1 cut(s) 340
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 2 cut(s) 119, 542
DpnI GATC 2 cut(s) 203, 315
DpnII GATC 2 cut(s) 201, 313
Eam1104I CTCTTC 2 cut(s) 192, 258
EarI CTCTTC 2 cut(s) 192, 258
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 141, 189
Eco31I GGTCTC 2 cut(s) 120, 260
Eco47I GGWCC 1 cut(s) 340
Eco47III AGCGCT 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 2 cut(s) 141, 189
ErhI CCWWGG 2 cut(s) 141, 189
FaiI YATR 1 cut(s) 491
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 399
Fnu4HI GCNGC 4 cut(s) 80, 83, 394, 494
FokI GGATG 2 cut(s) 161, 535
Fsp4HI GCNGC 4 cut(s) 80, 83, 394, 494
GlaI GCGC 2 cut(s) 69, 275
GluI GCNGC 4 cut(s) 80, 83, 394, 494
GsaI CCCAGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 277
HhaI GCGC 2 cut(s) 70, 276
Hin6I GCGC 2 cut(s) 68, 274
HinP1I GCGC 2 cut(s) 68, 274
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 485, 557
HpaI GTTAAC 1 cut(s) 364
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 5 cut(s) 63, 120, 185, 227, 313
Hpy188III TCNNGA 2 cut(s) 205, 290
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 4 cut(s) 226, 296, 319, 397
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 4 cut(s) 31, 100, 493, 565
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 76, 88, 97, 304, 431, 538
HpyF3I CTNAG 2 cut(s) 119, 542
HpySE526I ACGT 1 cut(s) 552
HspAI GCGC 2 cut(s) 68, 274
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 2 cut(s) 201, 313
LmnI GCTCC 4 cut(s) 52, 79, 295, 538
Lsp1109I GCAGC 3 cut(s) 94, 380, 505
LweI GCATC 2 cut(s) 18, 94
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 203, 315
MboI GATC 2 cut(s) 201, 313
MboII GAAGA 9 cut(s) 209, 223, 226, 275, 361, 412, 457, 526, 538
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 313
MluCI AATT 1 cut(s) 245
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 86
MseI TTAA 2 cut(s) 363, 374
MspA1I CMGCKG 3 cut(s) 91, 338, 496
MspR9I CCNGG 1 cut(s) 163
MunI CAATTG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 7 cut(s) 12, 76, 88, 97, 304, 431, 538
NdeII GATC 2 cut(s) 201, 313
NlaIV GGNNCC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 557
PkrI GCNGC 4 cut(s) 81, 84, 395, 495
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 313
PvuII CAGCTG 2 cut(s) 91, 496
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
Rsr2I CGGWCCG 1 cut(s) 340
RsrII CGGWCCG 1 cut(s) 340
SaqAI TTAA 2 cut(s) 363, 374
SatI GCNGC 4 cut(s) 80, 83, 394, 494
Sau3AI GATC 2 cut(s) 201, 313
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 163
SfaNI GCATC 2 cut(s) 18, 94
SinI GGWCC 1 cut(s) 340
SmlI CTYRAG 2 cut(s) 428, 533
SmoI CTYRAG 2 cut(s) 428, 533
Sse9I AATT 1 cut(s) 245
SsiI CCGC 4 cut(s) 77, 80, 95, 338
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 2 cut(s) 141, 189
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 39, 204
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 460
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 2 cut(s) 363, 374
Tru9I TTAA 2 cut(s) 363, 374
TscAI CASTG 1 cut(s) 387
TseI GCWGC 3 cut(s) 82, 393, 493
TspDTI ATGAA 1 cut(s) 539
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 340
XagI CCTNNNNNAGG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.