AT3G10850

Hydroxyacylglutathione hydrolase C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017173
Physical Location & Seq
Reverse (-)
3397549 .. 3399761
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10850.1

Sequence Viewer

Length: 777 bp
ATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCCGGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTACGCATCATCACTGGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATATCAAAGTATATGGAGGTTCTCTGGATAAGGTGAAGGGTTGCACTGATGCGGTTGATAATGGTGACAAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAACCCAGCCGTGTTCACCGGAGATACACTTTTTGTTGCTGGATGTGGGAAGTTTTTTGAAGGGACAGCTGAGCAGATGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGAAGATACAACAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATCTTCCCACAATCCCTTCAACACTGGAGGAAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACAAGAAGGATCAGTGGAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00620 map00620
Pfam Domains
Protein Families
HAGH_C Lactamase_B

Protein Analysis

258

Amino Acids

28.79

Weight (kDa)

5.93

Isoelectric Point (pI)

23.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 13 - 174 2.6e-14 Metallo-beta-lactamase superfamily
HAGH_C PF16123 175 - 256 3.1e-30 Hydroxyacylglutathione hydrolase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10850
fragaria_vesca FvH4_7g26250 FvH4_7g26250
malus_domestica MD01G1171200.v1.1
prunus_persica Prupe.2G266700_v2.0.a1
pyrus_communis pycom01g18340
rosa_chinensis RchiOBHm_Chr1g0372701
rosa_laevigata RLG00000026878
rosa_multiflora Rmu_sc0034231.1_g000002
rosa_roxburghii Rroxscaffold_4G00284740
rosa_rugosa Rorug01G0373800
rosa_samantha Rh1BG346000
rosa_wichuraiana Rw1G033650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 4 cut(s) 74, 77, 266, 516
AclWI GGATC 5 cut(s) 80, 89, 93, 180, 768
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 545
AfaI GTAC 2 cut(s) 150, 527
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 2 cut(s) 440, 642
AhdI GACNNNNNGTC 1 cut(s) 294
AjuI GAANNNNNNNTTGG 2 cut(s) 609, 641
AluBI AGCT 4 cut(s) 134, 286, 449, 658
AluI AGCT 4 cut(s) 134, 286, 449, 658
Alw21I GWGCWC 2 cut(s) 65, 660
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 5 cut(s) 80, 89, 93, 180, 768
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 2 cut(s) 517, 600
ApaI GGGCCC 1 cut(s) 604
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 545
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 615
AspS9I GGNCC 2 cut(s) 600, 601
AsuHPI GGTGA 4 cut(s) 118, 259, 290, 388
BaeGI GKGCMC 1 cut(s) 604
BamHI GGATCC 1 cut(s) 85
BanII GRGCYC 2 cut(s) 604, 660
Bbv12I GWGCWC 2 cut(s) 65, 660
BbvI GCAGC 1 cut(s) 472
BceAI ACGGC 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 616
BglII AGATCT 2 cut(s) 6, 622
BisI GCNGC 3 cut(s) 75, 486, 517
BlpI GCTNAGC 1 cut(s) 450
BlsI GCNGC 3 cut(s) 76, 487, 518
BmeRI GACNNNNNGTC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 600, 601
BmiI GGNNCC 4 cut(s) 87, 210, 564, 602
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 3 cut(s) 122, 169, 253
BmuI ACTGGG 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 668
Bpu1102I GCTNAGC 1 cut(s) 450
Bsa29I ATCGAT 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 3 cut(s) 65, 97, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 89, 173, 651
BseAI TCCGGA 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 111, 441
BseNI ACTGG 3 cut(s) 89, 173, 651
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 1 cut(s) 472
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 519, 602
BshVI ATCGAT 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 65, 660
BsiSI CCGG 4 cut(s) 66, 98, 180, 399
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 63
BsmBI CGTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 2 cut(s) 519, 602
Bsp120I GGGCCC 1 cut(s) 600
Bsp1286I GDGCHC 3 cut(s) 65, 604, 660
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
Bsp1720I GCTNAGC 1 cut(s) 450
BspACI CCGC 4 cut(s) 74, 77, 266, 516
BspANI GGCC 2 cut(s) 519, 602
BspCNI CTCAG 2 cut(s) 112, 442
BspDI ATCGAT 1 cut(s) 54
BspEI TCCGGA 1 cut(s) 97
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 4 cut(s) 87, 210, 564, 602
BspPI GGATC 5 cut(s) 80, 89, 93, 180, 768
BspQI GCTCTTC 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 3 cut(s) 89, 173, 651
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 532, 559
Bst6I CTCTTC 1 cut(s) 648
BstDEI CTNAG 3 cut(s) 120, 135, 450
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 8 cut(s) 9, 88, 97, 111, 141, 175, 625, 763
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 472
BstX2I RGATCY 3 cut(s) 6, 85, 622
BstYI RGATCY 3 cut(s) 6, 85, 622
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 2 cut(s) 519, 602
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 1 cut(s) 428
BtsIMutI CAGTG 4 cut(s) 166, 258, 644, 770
CfoI GCGC 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 600, 601
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 149, 526
CspCI CAANNNNNGTGG 3 cut(s) 37, 311, 346
CviAII CATG 3 cut(s) 176, 521, 597
CviQI GTAC 2 cut(s) 149, 526
DdeI CTNAG 3 cut(s) 120, 135, 450
DpnI GATC 8 cut(s) 8, 87, 96, 110, 140, 174, 624, 762
DpnII GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
DriI GACNNNNNGTC 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 648
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 2 cut(s) 604, 660
Eco32I GATATC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 658
EcoICRI GAGCTC 1 cut(s) 658
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 2 cut(s) 604, 660
ErhI CCWWGG 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 3 cut(s) 179, 524, 600
FaiI YATR 8 cut(s) 177, 226, 228, 311, 360, 522, 598, 677
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 457
FatI CATG 3 cut(s) 175, 520, 596
Fnu4HI GCNGC 3 cut(s) 75, 486, 517
FokI GGATG 1 cut(s) 435
FriOI GRGCYC 2 cut(s) 604, 660
Fsp4HI GCNGC 3 cut(s) 75, 486, 517
GlaI GCGC 1 cut(s) 614
GluI GCNGC 3 cut(s) 75, 486, 517
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 668
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 2 cut(s) 519, 602
HapII CCGG 4 cut(s) 66, 98, 180, 399
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 615
Hin1II CATG 3 cut(s) 179, 524, 600
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HincII GTYRAC 1 cut(s) 608
HindII GTYRAC 1 cut(s) 608
HinfI GANTC 1 cut(s) 478
HpaII CCGG 4 cut(s) 66, 98, 180, 399
HphI GGTGA 4 cut(s) 118, 259, 290, 388
Hpy166II GTNNAC 5 cut(s) 364, 396, 511, 528, 608
Hpy188I TCNGA 2 cut(s) 48, 750
Hpy188III TCNNGA 4 cut(s) 98, 212, 239, 299
Hpy8I GTNNAC 5 cut(s) 364, 396, 511, 528, 608
HpyAV CCTTC 6 cut(s) 97, 244, 368, 434, 648, 751
HpyCH4III ACNGT 2 cut(s) 532, 559
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 28, 258, 488, 717
HpyF3I CTNAG 3 cut(s) 120, 135, 450
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 179, 524, 600
HspAI GCGC 1 cut(s) 613
Kpn2I TCCGGA 1 cut(s) 97
Kzo9I GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
LguI GCTCTTC 1 cut(s) 648
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 3 cut(s) 122, 169, 253
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 4 cut(s) 278, 332, 344, 475
MalI GATC 8 cut(s) 8, 87, 96, 110, 140, 174, 624, 762
MboI GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
MboII GAAGA 5 cut(s) 16, 205, 589, 617, 665
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 3 cut(s) 6, 85, 622
MhlI GDGCHC 3 cut(s) 65, 604, 660
MluCI AATT 2 cut(s) 545, 726
MlyI GAGTC 1 cut(s) 472
MnlI CCTC 4 cut(s) 224, 643, 732, 762
MroI TCCGGA 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 198, 306, 534
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 4 cut(s) 66, 98, 180, 399
MunI CAATTG 1 cut(s) 726
MvnI CGCG 1 cut(s) 74
NdeII GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
NlaIII CATG 3 cut(s) 179, 524, 600
NlaIV GGNNCC 4 cut(s) 87, 210, 564, 602
NmuCI GTSAC 4 cut(s) 278, 332, 344, 475
PciSI GCTCTTC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 76, 487, 518
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 385
PspN4I GGNNCC 4 cut(s) 87, 210, 564, 602
PspOMI GGGCCC 1 cut(s) 600
PspPI GGNCC 2 cut(s) 600, 601
PsuI RGATCY 3 cut(s) 6, 85, 622
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 150, 527
RsaNI GTAC 2 cut(s) 149, 526
RseI CAYNNNNRTG 1 cut(s) 180
SacI GAGCTC 1 cut(s) 660
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 198, 306, 534
SatI GCNGC 3 cut(s) 75, 486, 517
Sau3AI GATC 8 cut(s) 6, 85, 94, 108, 138, 172, 622, 760
Sau96I GGNCC 2 cut(s) 600, 601
SchI GAGTC 1 cut(s) 472
SduI GDGCHC 3 cut(s) 65, 604, 660
SfaNI GCATC 3 cut(s) 122, 169, 253
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 2 cut(s) 545, 726
SsiI CCGC 4 cut(s) 74, 77, 266, 516
SstI GAGCTC 1 cut(s) 660
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 532, 559
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 54, 660
TasI AATT 2 cut(s) 545, 726
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 77, 519
Tru1I TTAA 3 cut(s) 198, 306, 534
Tru9I TTAA 3 cut(s) 198, 306, 534
TscAI CASTG 4 cut(s) 173, 265, 651, 770
TseFI GTSAC 4 cut(s) 278, 332, 344, 475
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 4 cut(s) 278, 332, 344, 475
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 4 cut(s) 173, 265, 651, 770
XapI RAATTY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.