Rroxscaffold_4G00284740

Hydroxyacylglutathione hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017173
Physical Location & Seq
Reverse (-)
6300669 .. 6303729
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284740.1

Sequence Viewer

Length: 825 bp
ATGAAAATCCAACACGTTGCTTGCTTGGAAGACAATTACGCATACCTAATTATTGACGAGAGCACCAAAGAAGCCGCGGTTGTGGATCCTGTTGAACCCGAAAAGGTTCTTAAAGCAGCCCAAGAGCACGGTGCCCAACTCAAACTCGTCCTCACCACTCACCACCATTGGGATCATGCCGGAGGAAATGAGAAGATAAAGCAGTTGGTGTCTGGCATTAAAGTGTATGGGGGTTCTGTTGATAATGTGAAGGGCTGCACTGATAAGGTGGACAATGGTGATAAGATTTCGCTCGGAGCTGATACTCAAATACTCTCGCTTCACACACCTTGTCACACAAAAGGTCACATAAGTTATTACGTGACAAGCAAAGAGGGAGAGGAACCAGCTGTTTTCACCGGAGACACACTGTTTATTGCTGGTTGCGGCAAATTTTTCGAAGGAACAGCTGAACAGATGCATCAGTCACTATGCGTAACTTTAGCTTCATTGCCAAAGCCTACACGAGTTTACTGTGGTCATGAGTACACGGTGAAGAACTTGCAATTTGCTCAGACAGTAGAACCAGACAATGCCAAGATAAAGCAGAAGTTATCCTGGGCACAGCAGCAGCGGGAAGCAGGTCTCCCGACAGTTCCCTCAACCATTGAGAGTGAGATGGAAACAAACCCTTTTGTGCGGGCTGATCTGCCAGAGCTACAGGAGAAGGTCGGTTGCCACAATGCTGTGGACGCCCTACGTGAGATAAGGCAGAGGAAGGACAATTGGGAGGGGCTAATCGACAATCTACTTAGAAACATACCGGCTAGTTTGAGATTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00620 map00620
Pfam Domains
Protein Families
HAGH_C Lactamase_B

Protein Analysis

274

Amino Acids

30.35

Weight (kDa)

5.84

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 13 - 174 7.7e-14 Metallo-beta-lactamase superfamily
HAGH_C PF16123 175 - 256 8.6e-29 Hydroxyacylglutathione hydrolase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10850
fragaria_vesca FvH4_7g26250 FvH4_7g26250
malus_domestica MD01G1171200.v1.1
prunus_persica Prupe.2G266700_v2.0.a1
pyrus_communis pycom01g18340
rosa_chinensis RchiOBHm_Chr1g0372701
rosa_laevigata RLG00000026878
rosa_multiflora Rmu_sc0034231.1_g000002
rosa_roxburghii Rroxscaffold_4G00284740
rosa_rugosa Rorug01G0373800
rosa_samantha Rh1BG346000
rosa_wichuraiana Rw1G033650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 131
AccII CGCG 1 cut(s) 77
AciI CCGC 5 cut(s) 75, 77, 426, 613, 679
AclWI GGATC 3 cut(s) 80, 93, 180
AcsI RAATTY 1 cut(s) 431
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 596
AluBI AGCT 5 cut(s) 299, 389, 449, 485, 697
AluI AGCT 5 cut(s) 299, 389, 449, 485, 697
Alw21I GWGCWC 2 cut(s) 65, 129
Alw26I GTCTC 2 cut(s) 396, 629
AlwI GGATC 3 cut(s) 80, 93, 180
ApeKI GCWGC 4 cut(s) 116, 255, 607, 610
ApoI RAATTY 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 105
AsuHPI GGTGA 5 cut(s) 145, 152, 290, 388, 544
AsuII TTCGAA 1 cut(s) 438
BaeGI GKGCMC 2 cut(s) 136, 604
BamHI GGATCC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 65, 129
BbvI GCAGC 4 cut(s) 128, 242, 619, 622
BccI CCATC 1 cut(s) 652
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 598
BcoDI GTCTC 2 cut(s) 396, 629
BfaI CTAG 1 cut(s) 807
BfmI CTRYAG 1 cut(s) 698
BfuAI ACCTGC 1 cut(s) 611
BisI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
BlsI GCNGC 6 cut(s) 76, 118, 257, 428, 609, 612
Bme1390I CCNGG 1 cut(s) 598
BmiI GGNNCC 3 cut(s) 87, 133, 384
BmrFI CCNGG 1 cut(s) 598
BmsI GCATC 2 cut(s) 447, 469
BpiI GAAGAC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 438
BsaAI YACGTR 2 cut(s) 361, 740
BsaHI GRCGYC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 2 cut(s) 75, 597
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse118I RCCGGY 1 cut(s) 802
Bse3DI GCAATG 1 cut(s) 488
BseBI CCWGG 1 cut(s) 598
BseDI CCNNGG 2 cut(s) 75, 597
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 1 cut(s) 566
BseSI GKGCMC 2 cut(s) 136, 604
BseXI GCAGC 4 cut(s) 128, 242, 619, 622
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 65, 129
BsiSI CCGG 3 cut(s) 180, 399, 803
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 396, 629
Bso31I GGTCTC 1 cut(s) 629
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 4 cut(s) 65, 129, 136, 604
Bsp143I GATC 3 cut(s) 85, 172, 685
BspACI CCGC 5 cut(s) 75, 77, 426, 613, 679
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 87, 133, 384
BspMI ACCTGC 1 cut(s) 611
BspPI GGATC 3 cut(s) 80, 93, 180
BspT104I TTCGAA 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 802
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 2 cut(s) 75, 597
BssMI GATC 3 cut(s) 85, 172, 685
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 6 cut(s) 131, 411, 515, 532, 559, 634
BstACI GRCGYC 1 cut(s) 732
BstBAI YACGTR 2 cut(s) 361, 740
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 22, 681
BstDEI CTNAG 2 cut(s) 552, 791
BstDSI CCRYGG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 3 cut(s) 88, 175, 688
BstMAI GTCTC 2 cut(s) 396, 629
BstMBI GATC 3 cut(s) 85, 172, 685
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNI CCWGG 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 596
BstSFI CTRYAG 1 cut(s) 698
BstSLI GKGCMC 2 cut(s) 136, 604
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 4 cut(s) 128, 242, 619, 622
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 258, 407
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 2 cut(s) 22, 681
CciI TCATGA 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 802
Cfr42I CCGCGG 1 cut(s) 78
CseI GACGC 1 cut(s) 740
Csp6I GTAC 1 cut(s) 526
CviAII CATG 2 cut(s) 176, 521
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 2 cut(s) 552, 791
DpnI GATC 3 cut(s) 87, 174, 687
DpnII GATC 3 cut(s) 85, 172, 685
Eco31I GGTCTC 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 2 cut(s) 179, 524
FaiI YATR 7 cut(s) 43, 177, 228, 350, 472, 522, 800
FatI CATG 2 cut(s) 175, 520
FauI CCCGC 2 cut(s) 606, 672
Fnu4HI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
Fsp4HI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
FspBI CTAG 1 cut(s) 807
GluI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
HapII CCGG 3 cut(s) 180, 399, 803
HgaI GACGC 1 cut(s) 740
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 2 cut(s) 179, 524
HpaII CCGG 3 cut(s) 180, 399, 803
HphI GGTGA 5 cut(s) 145, 152, 290, 388, 544
Hpy166II GTNNAC 4 cut(s) 271, 511, 528, 730
Hpy188I TCNGA 2 cut(s) 296, 555
Hpy188III TCNNGA 2 cut(s) 521, 628
Hpy8I GTNNAC 4 cut(s) 271, 511, 528, 730
HpyAV CCTTC 4 cut(s) 244, 434, 700, 751
HpyCH4III ACNGT 6 cut(s) 131, 411, 515, 532, 559, 634
HpyCH4IV ACGT 3 cut(s) 15, 360, 739
HpyCH4V TGCA 3 cut(s) 258, 460, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpyF3I CTNAG 2 cut(s) 552, 791
HpySE526I ACGT 3 cut(s) 15, 360, 739
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 2 cut(s) 179, 524
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 3 cut(s) 85, 172, 685
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 4 cut(s) 128, 242, 619, 622
LweI GCATC 2 cut(s) 447, 469
MaeI CTAG 1 cut(s) 807
MaeII ACGT 3 cut(s) 15, 360, 739
MaeIII GTNAC 5 cut(s) 332, 344, 361, 465, 475
MalI GATC 3 cut(s) 87, 174, 687
MboI GATC 3 cut(s) 85, 172, 685
MboII GAAGA 3 cut(s) 41, 205, 547
MfeI CAATTG 1 cut(s) 763
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 4 cut(s) 65, 129, 136, 604
MluCI AATT 5 cut(s) 34, 48, 431, 545, 763
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 7 cut(s) 161, 176, 367, 373, 649, 747, 763
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 111, 219
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 4 cut(s) 77, 389, 449, 613
MspI CCGG 3 cut(s) 180, 399, 803
MspR9I CCNGG 1 cut(s) 598
MunI CAATTG 1 cut(s) 763
MvaI CCWGG 1 cut(s) 598
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 731
NdeII GATC 3 cut(s) 85, 172, 685
NlaIII CATG 2 cut(s) 179, 524
NlaIV GGNNCC 3 cut(s) 87, 133, 384
NmuCI GTSAC 4 cut(s) 332, 344, 361, 465
NsiI ATGCAT 1 cut(s) 462
NspV TTCGAA 1 cut(s) 438
PagI TCATGA 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 6 cut(s) 76, 118, 257, 428, 609, 612
Ppu21I YACGTR 2 cut(s) 361, 740
Psp6I CCWGG 1 cut(s) 596
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 3 cut(s) 87, 133, 384
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 2 cut(s) 389, 449
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 221
SacII CCGCGG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 111, 219
SatI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
Sau3AI GATC 3 cut(s) 85, 172, 685
ScrFI CCNGG 1 cut(s) 598
SduI GDGCHC 4 cut(s) 65, 129, 136, 604
SfaNI GCATC 2 cut(s) 447, 469
SfcI CTRYAG 1 cut(s) 698
Sfr303I CCGCGG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 438
SgrBI CCGCGG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 5 cut(s) 34, 48, 431, 545, 763
SsiI CCGC 5 cut(s) 75, 77, 426, 613, 679
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 1 cut(s) 596
TaaI ACNGT 6 cut(s) 131, 411, 515, 532, 559, 634
TaiI ACGT 3 cut(s) 18, 363, 742
TaqI TCGA 2 cut(s) 438, 780
TasI AATT 5 cut(s) 34, 48, 431, 545, 763
TatI WGTACW 1 cut(s) 525
TauI GCSGC 2 cut(s) 77, 429
Tru1I TTAA 2 cut(s) 111, 219
Tru9I TTAA 2 cut(s) 111, 219
TscAI CASTG 2 cut(s) 265, 414
TseFI GTSAC 4 cut(s) 332, 344, 361, 465
TseI GCWGC 4 cut(s) 116, 255, 607, 610
Tsp45I GTSAC 4 cut(s) 332, 344, 361, 465
TspDTI ATGAA 2 cut(s) 17, 477
TspRI CASTG 2 cut(s) 265, 414
XapI RAATTY 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 807
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.