FvH4_7g26250

Hydroxyacylglutathione hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017173
Physical Location & Seq
Forward (+)
19888000 .. 19890714
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26250.t2

Sequence Viewer

Length: 777 bp
ATGAAAATCCACCACGTTGCTTGCTTGGAAGACAATTACGCATACCTAATCATTGACGAGAGCACCAAAGAAGCGGCGGTTGTGGATCCTGTTGAACCCGAAAAGGTTCTTAAAGCGGCTCAAGAGCACGGTGCCCAAGTCAAAATCGTCCTCACCACTCACCACCATTGGGATCATGCGGGTGGAAATGAGAAGATAAAGGAGTTGGTGCCTGGTATAAAGGTGTATGGCGGTTCTGTTGATAATGTGAAGGGCTGCACTGATAAGGTGGACAATGGTGATAAGATTACGCTCGGAGCTGATACTCAAATACTCTCACTTCACACACCATGTCACACAAAAGGTCACATAAGTTATTATGTGACTAGCAAAGAGGGAGAGGAACCAGCTGTTTTCACCGGAGACACACTGTTTGTTGCTGGTTGCGGCAAATTTTTCGAAGGAACAGCTGAACAGATGCATCAGTCACTGTGTGTAACTTTGGCTTCTTTGCCAAAGCCTACACGAGTTTACTGTGGTCATGAGTACACAGTGAAAAACCTGCAATTTGCTCAGACAGTTGAGCCACACAATGCAAAGATAAAGCAGAAGTTATCCTGGGCACAGCAGCAGCGGGAAGCGGGTCTCCCAACGGTTCCCTCAACCATTGAGAGCGAGATGGAAACAAACCCCTTTGTGCGAGCTGATATGCCAGAGCTTCAGGAGAAGGTTGGTTGCCAAAATGCTGTGGAGGCTCTCCGCGAGATAAGGCAGAGGAAGGACAACTGGAGGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00620 map00620
Pfam Domains
Protein Families
HAGH_C Lactamase_B

Protein Analysis

259

Amino Acids

28.61

Weight (kDa)

6.0

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAGH_C PF16123 123 - 204 5.7e-29 Hydroxyacylglutathione hydrolase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10850
fragaria_vesca FvH4_7g26250 FvH4_7g26250
malus_domestica MD01G1171200.v1.1
prunus_persica Prupe.2G266700_v2.0.a1
pyrus_communis pycom01g18340
rosa_chinensis RchiOBHm_Chr1g0372701
rosa_laevigata RLG00000026878
rosa_multiflora Rmu_sc0034231.1_g000002
rosa_roxburghii Rroxscaffold_4G00284740
rosa_rugosa Rorug01G0373800
rosa_samantha Rh1BG346000
rosa_wichuraiana Rw1G033650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 131, 208
AccII CGCG 1 cut(s) 741
AciI CCGC 9 cut(s) 74, 77, 116, 179, 231, 426, 613, 620, 739
AclWI GGATC 3 cut(s) 80, 93, 180
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 683
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 2 cut(s) 211, 596
AluBI AGCT 5 cut(s) 299, 389, 449, 683, 697
AluI AGCT 5 cut(s) 299, 389, 449, 683, 697
Alw21I GWGCWC 2 cut(s) 65, 129
Alw26I GTCTC 2 cut(s) 396, 629
AlwI GGATC 3 cut(s) 80, 93, 180
AlwNI CAGNNNCTG 1 cut(s) 469
ApeKI GCWGC 3 cut(s) 255, 607, 610
ApoI RAATTY 1 cut(s) 431
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 1 cut(s) 105
AsuHPI GGTGA 4 cut(s) 145, 152, 290, 388
AsuII TTCGAA 1 cut(s) 438
BaeGI GKGCMC 2 cut(s) 136, 604
BamHI GGATCC 1 cut(s) 85
BanI GGYRCC 2 cut(s) 131, 208
BauI CACGAG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 65, 129
BbvI GCAGC 3 cut(s) 242, 619, 622
BccI CCATC 1 cut(s) 652
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 2 cut(s) 213, 598
BcoDI GTCTC 2 cut(s) 396, 629
BfaI CTAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 549
BisI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
BlsI GCNGC 6 cut(s) 76, 118, 257, 428, 609, 612
Bme1390I CCNGG 2 cut(s) 213, 598
BmiI GGNNCC 5 cut(s) 87, 133, 210, 384, 636
BmrFI CCNGG 2 cut(s) 213, 598
BmsI GCATC 2 cut(s) 447, 469
BpiI GAAGAC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 597
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 770
BseBI CCWGG 2 cut(s) 213, 598
BseDI CCNNGG 1 cut(s) 597
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 770
BseSI GKGCMC 2 cut(s) 136, 604
BseXI GCAGC 3 cut(s) 242, 619, 622
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 741
BshNI GGYRCC 2 cut(s) 131, 208
BsiHKAI GWGCWC 2 cut(s) 65, 129
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 396, 629
Bso31I GGTCTC 1 cut(s) 629
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 4 cut(s) 65, 129, 136, 604
Bsp143I GATC 2 cut(s) 85, 172
BspACI CCGC 9 cut(s) 74, 77, 116, 179, 231, 426, 613, 620, 739
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 1 cut(s) 741
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 5 cut(s) 87, 133, 210, 384, 636
BspMI ACCTGC 1 cut(s) 549
BspPI GGATC 3 cut(s) 80, 93, 180
BspT104I TTCGAA 1 cut(s) 438
BspT107I GGYRCC 2 cut(s) 131, 208
BspTNI GGTCTC 1 cut(s) 629
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 2 cut(s) 85, 172
BssSI CACGAG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 213, 598
Bst4CI ACNGT 7 cut(s) 131, 411, 471, 515, 532, 559, 634
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 22, 681
BstDEI CTNAG 1 cut(s) 552
BstFNI CGCG 1 cut(s) 741
BstKTI GATC 2 cut(s) 88, 175
BstMAI GTCTC 2 cut(s) 396, 629
BstMBI GATC 2 cut(s) 85, 172
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNI CCWGG 2 cut(s) 213, 598
BstSCI CCNGG 2 cut(s) 211, 596
BstSLI GKGCMC 2 cut(s) 136, 604
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 3 cut(s) 242, 619, 622
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtsIMutI CAGTG 4 cut(s) 258, 407, 467, 537
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 2 cut(s) 22, 681
CaiI CAGNNNCTG 1 cut(s) 469
CciI TCATGA 1 cut(s) 520
Csp6I GTAC 1 cut(s) 526
CspCI CAANNNNNGTGG 1 cut(s) 37
CviAII CATG 3 cut(s) 176, 330, 521
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 1 cut(s) 552
DpnI GATC 2 cut(s) 87, 174
DpnII GATC 2 cut(s) 85, 172
DraIII CACNNNGTG 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 211, 596
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 3 cut(s) 179, 333, 524
FaiI YATR 9 cut(s) 43, 177, 218, 228, 331, 350, 360, 522, 689
FatI CATG 3 cut(s) 175, 329, 520
FauI CCCGC 3 cut(s) 172, 606, 613
Fnu4HI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
Fsp4HI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
FspBI CTAG 1 cut(s) 366
GluI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
HapII CCGG 1 cut(s) 399
Hin1II CATG 3 cut(s) 179, 333, 524
HpaII CCGG 1 cut(s) 399
HphI GGTGA 4 cut(s) 145, 152, 290, 388
Hpy166II GTNNAC 3 cut(s) 271, 511, 528
Hpy188I TCNGA 2 cut(s) 296, 555
Hpy188III TCNNGA 3 cut(s) 122, 521, 701
Hpy8I GTNNAC 3 cut(s) 271, 511, 528
HpyAV CCTTC 4 cut(s) 244, 434, 700, 751
HpyCH4III ACNGT 7 cut(s) 131, 411, 471, 515, 532, 559, 634
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 258, 460, 544, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 179, 333, 524
Kzo9I GATC 2 cut(s) 85, 172
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 3 cut(s) 242, 619, 622
LweI GCATC 2 cut(s) 447, 469
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 5 cut(s) 332, 344, 361, 465, 475
MalI GATC 2 cut(s) 87, 174
MboI GATC 2 cut(s) 85, 172
MboII GAAGA 2 cut(s) 41, 205
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 4 cut(s) 65, 129, 136, 604
MluCI AATT 3 cut(s) 34, 431, 545
MnlI CCTC 7 cut(s) 161, 367, 373, 649, 724, 747, 762
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 3 cut(s) 389, 449, 613
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 213, 598
MvaI CCWGG 2 cut(s) 213, 598
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 1 cut(s) 731
NdeII GATC 2 cut(s) 85, 172
NlaIII CATG 3 cut(s) 179, 333, 524
NlaIV GGNNCC 5 cut(s) 87, 133, 210, 384, 636
NmuCI GTSAC 4 cut(s) 332, 344, 361, 465
NsiI ATGCAT 1 cut(s) 462
NspV TTCGAA 1 cut(s) 438
PagI TCATGA 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 6 cut(s) 76, 118, 257, 428, 609, 612
Psp6I CCWGG 2 cut(s) 211, 596
PspGI CCWGG 2 cut(s) 211, 596
PspN4I GGNNCC 5 cut(s) 87, 133, 210, 384, 636
PstNI CAGNNNCTG 1 cut(s) 469
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 2 cut(s) 389, 449
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 6 cut(s) 75, 117, 256, 427, 608, 611
Sau3AI GATC 2 cut(s) 85, 172
ScrFI CCNGG 2 cut(s) 213, 598
SduI GDGCHC 4 cut(s) 65, 129, 136, 604
SfaNI GCATC 2 cut(s) 447, 469
SfuI TTCGAA 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 3 cut(s) 34, 431, 545
SsiI CCGC 9 cut(s) 74, 77, 116, 179, 231, 426, 613, 620, 739
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 211, 596
TaaI ACNGT 7 cut(s) 131, 411, 471, 515, 532, 559, 634
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 438
TasI AATT 3 cut(s) 34, 431, 545
TatI WGTACW 1 cut(s) 525
TauI GCSGC 3 cut(s) 77, 119, 429
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 4 cut(s) 265, 414, 474, 537
TseFI GTSAC 4 cut(s) 332, 344, 361, 465
TseI GCWGC 3 cut(s) 255, 607, 610
Tsp45I GTSAC 4 cut(s) 332, 344, 361, 465
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 265, 414, 474, 537
XapI RAATTY 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.