AT3G11090

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016708
Physical Location & Seq
Forward (+)
3474922 .. 3475848
927 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11090.1

Sequence Viewer

Length: 498 bp
ATGAGAGGGCATGAGCCACGATCAAGCTCATCTTGTGCAGCCTGCAAGCTCTTGAAGAGACGATGCACACCCACTTGCATTTTCGCTCCTTATTTCCGCTCAAGTGACTTGATAACTTTCGCCAAAGTCCATAAAGTCTTTGGAGCCAGCAACGTCAGTAAGCTTCTCGGTGAAGTTCCTGAAGAACAGAGACAAGAAACCGTTAACTCCTTGGCTTATGAAGCTGAGGTTCGTCTCAAGGATCCTGTTTACGGTTGCATTGGAGCCATAGCGTCTCTGCAGAAGAAGATGCTCGAGCTTCAACACGATCTAGCTGTTGCTCGCACTCGACTACTTGCCCATTCTGGGGTCAACAACAGCCAAGTGTCCCCTTTGGATGATTCTCCTGAGCTTGCTGCTTTTCTTGATCTTGTACCTTATAGTGACTTGATGTTGCTTGATGGGTCTACTAATCTTGATGCTTACTTGTATGATCTTGGACAGCCTCCTTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

165

Amino Acids

18.16

Weight (kDa)

6.07

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 11 - 107 4.2e-37 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11090
fragaria_vesca FvH4_7g24810
malus_domestica MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica Prupe.2G253300_v2.0.a1
pyrus_communis pycom07g20340
rosa_chinensis RchiOBHm_Chr1g0370681
rosa_laevigata RLG00000027018
rosa_roxburghii Rroxscaffold_4G00286320
rosa_rugosa Rorug01G0358400
rosa_samantha Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana Rw1G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 446
AciI CCGC 1 cut(s) 97
AclWI GGATC 2 cut(s) 236, 249
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 3 cut(s) 251, 345, 346
AgsI TTSAA 2 cut(s) 55, 302
AluBI AGCT 7 cut(s) 27, 49, 163, 224, 298, 314, 391
AluI AGCT 7 cut(s) 27, 49, 163, 224, 298, 314, 391
Alw26I GTCTC 4 cut(s) 52, 184, 239, 279
AlwI GGATC 2 cut(s) 236, 249
Ama87I CYCGRG 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 38, 395
AsuHPI GGTGA 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 293
BamHI GGATCC 1 cut(s) 241
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 50, 382
BccI CCATC 1 cut(s) 434
BcoDI GTCTC 4 cut(s) 52, 184, 239, 279
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 278
BisI GCNGC 2 cut(s) 39, 396
BlsI GCNGC 2 cut(s) 40, 397
BmeT110I CYCGRG 1 cut(s) 293
BmiI GGNNCC 3 cut(s) 145, 243, 265
BmsI GCATC 3 cut(s) 53, 279, 448
Bpu10I CCTNAGC 2 cut(s) 225, 387
BpuEI CTTGAG 2 cut(s) 85, 221
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 345, 346
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 3 cut(s) 251, 345, 346
BseMII CTCAG 2 cut(s) 216, 378
BseXI GCAGC 2 cut(s) 50, 382
BsgI GTGCAG 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 251, 345, 346
BsmAI GTCTC 4 cut(s) 52, 184, 239, 279
BsmBI CGTCTC 3 cut(s) 52, 239, 279
BsmFI GGGAC 1 cut(s) 352
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 5 cut(s) 20, 241, 307, 406, 472
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 217, 379
BspLI GGNNCC 3 cut(s) 145, 243, 265
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 2 cut(s) 236, 249
BsrBI CCGCTC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 5 cut(s) 20, 241, 307, 406, 472
BssT1I CCWWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 202, 254
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 5 cut(s) 43, 47, 148, 322, 393
BstDEI CTNAG 2 cut(s) 225, 387
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 5 cut(s) 23, 244, 310, 409, 475
BstMAI GTCTC 4 cut(s) 52, 184, 239, 279
BstMBI GATC 5 cut(s) 20, 241, 307, 406, 472
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 50, 382
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtsCI GGATG 1 cut(s) 382
Cac8I GCNNGC 5 cut(s) 43, 47, 148, 322, 393
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 413
CviAII CATG 1 cut(s) 11
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 2 cut(s) 225, 387
DpnI GATC 5 cut(s) 22, 243, 309, 408, 474
DpnII GATC 5 cut(s) 20, 241, 307, 406, 472
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 3 cut(s) 52, 239, 279
FaeI CATG 1 cut(s) 14
FaiI YATR 7 cut(s) 12, 132, 219, 269, 420, 471, 496
FalI AAGNNNNNCTT 2 cut(s) 16, 48
FaqI GGGAC 1 cut(s) 352
FatI CATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 2 cut(s) 39, 396
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 39, 396
FspBI CTAG 1 cut(s) 311
GluI GCNGC 2 cut(s) 39, 396
HgaI GACGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 14
HincII GTYRAC 2 cut(s) 205, 352
HindII GTYRAC 2 cut(s) 205, 352
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 380
HpaI GTTAAC 1 cut(s) 205
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 4 cut(s) 205, 250, 352, 447
Hpy188III TCNNGA 5 cut(s) 52, 179, 386, 404, 455
Hpy8I GTNNAC 4 cut(s) 205, 250, 352, 447
HpyCH4III ACNGT 2 cut(s) 202, 254
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 38, 45, 66, 78, 258, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 225, 387
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 14
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 5 cut(s) 20, 241, 307, 406, 472
LmnI GCTCC 3 cut(s) 91, 143, 263
LpnPI CCDG 6 cut(s) 55, 160, 192, 258, 330, 399
Lsp1109I GCAGC 2 cut(s) 50, 382
LweI GCATC 3 cut(s) 53, 279, 448
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 104, 422
MalI GATC 5 cut(s) 22, 243, 309, 408, 474
MbiI CCGCTC 1 cut(s) 99
MboI GATC 5 cut(s) 20, 241, 307, 406, 472
MboII GAAGA 4 cut(s) 67, 194, 295, 298
MflI RGATCY 1 cut(s) 241
MnlI CCTC 2 cut(s) 220, 495
MseI TTAA 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 5 cut(s) 20, 241, 307, 406, 472
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 3 cut(s) 145, 243, 265
NmuCI GTSAC 2 cut(s) 104, 422
PaeR7I CTCGAG 1 cut(s) 293
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 40, 397
PspN4I GGNNCC 3 cut(s) 145, 243, 265
PspXI VCTCGAGB 1 cut(s) 293
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 2 cut(s) 39, 396
Sau3AI GATC 5 cut(s) 20, 241, 307, 406, 472
SfaNI GCATC 3 cut(s) 53, 279, 448
SfcI CTRYAG 1 cut(s) 278
Sfr274I CTCGAG 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 3 cut(s) 100, 236, 293
SmoI CTYRAG 3 cut(s) 100, 236, 293
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 202, 254
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 294, 328
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 2 cut(s) 104, 422
TseI GCWGC 2 cut(s) 38, 395
Tsp45I GTSAC 2 cut(s) 104, 422
TspDTI ATGAA 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.