pycom07g20340

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016708
Physical Location & Seq
Reverse (-)
22472749 .. 22473282
534 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20340.1

Sequence Viewer

Length: 534 bp
ATGAAAGGAAGTCATGAGCCCCGTTCAAGCTCCTCTTGCGCAGCTTGCAAGACACTGAAGAGAAGATGCAGTCCCACCTGCATTTTCGCACCCTATTTCCACTCCGACGATGCCAAAAAATTCGCCCAAGTTCACAAAGTGTTCGGGGCGAGCAATGTGAGCAAGATCCTAACCGAAGTCCCCGAGGATCAGCGCGAGGACACGGTGAATTCGCTGGCCTACGAGGCAGAAGCGAGGCTGAGAGACCCCGTTTACGGCTGCATTGGCGCCATATCGATGTTGCAAAGGAAGATGATTCAGTTGCAGCATGATCTGGCTGTTGCTCGAGCTCGTCTCGCTTGCTATGCTCCGAAGAATTCGCCCTCGTTGTCGTCGTGCTCTTCTTCTTGTTGTGCCATGTTAGATGAGGCTACTTTCAGTGGATTTCCTGCTTGGAGTGGATTAAATAGTAACAATTTCAGCCAGAATTCATCTGATTTGATCAGCCAGCATGGACAAGCTAGTGATTTTAGCTATTCTTCATATATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

178

Amino Acids

19.34

Weight (kDa)

8.07

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 109 3.3e-39 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11090
fragaria_vesca FvH4_7g24810
malus_domestica MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica Prupe.2G253300_v2.0.a1
pyrus_communis pycom07g20340
rosa_chinensis RchiOBHm_Chr1g0370681
rosa_laevigata RLG00000027018
rosa_roxburghii Rroxscaffold_4G00286320
rosa_rugosa Rorug01G0358400
rosa_samantha Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana Rw1G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 195
AclWI GGATC 2 cut(s) 160, 195
AcsI RAATTY 4 cut(s) 119, 208, 355, 466
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 27
AluBI AGCT 5 cut(s) 30, 44, 329, 500, 513
AluI AGCT 5 cut(s) 30, 44, 329, 500, 513
Alw21I GWGCWC 2 cut(s) 331, 380
Alw26I GTCTC 2 cut(s) 237, 338
AlwI GGATC 2 cut(s) 160, 195
Ama87I CYCGRG 2 cut(s) 182, 324
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 3 cut(s) 41, 258, 304
ApoI RAATTY 4 cut(s) 119, 208, 355, 466
AspLEI GCGC 3 cut(s) 41, 195, 269
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 2 cut(s) 182, 324
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 21, 331
Bbv12I GWGCWC 2 cut(s) 331, 380
BbvI GCAGC 3 cut(s) 53, 245, 316
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 237, 338
BfaI CTAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 86
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 3 cut(s) 42, 259, 305
BlsI GCNGC 3 cut(s) 43, 260, 306
BmeT110I CYCGRG 2 cut(s) 182, 324
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 2 cut(s) 56, 100
BplI GAGNNNNNCTC 2 cut(s) 318, 350
Bsa29I ATCGAT 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 53, 245, 316
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 331, 380
BsiHKCI CYCGRG 2 cut(s) 182, 324
BslFI GGGAC 2 cut(s) 57, 164
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 237, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 57, 164
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 2 cut(s) 182, 324
Bsp1286I GDGCHC 3 cut(s) 21, 331, 380
Bsp143I GATC 4 cut(s) 165, 187, 310, 480
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 231
BspDI ATCGAT 1 cut(s) 275
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 160, 195
BspQI GCTCTTC 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 4 cut(s) 165, 187, 310, 480
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 205, 531
Bst6I CTCTTC 2 cut(s) 53, 385
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 46, 151, 216, 340, 488
BstDEI CTNAG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 41, 195, 269
BstKTI GATC 4 cut(s) 168, 190, 313, 483
BstMAI GTCTC 2 cut(s) 237, 338
BstMBI GATC 4 cut(s) 165, 187, 310, 480
BstMWI GCNNNNNNNGC 7 cut(s) 36, 45, 159, 224, 264, 335, 344
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 53, 245, 316
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 275
BsuRI GGCC 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 53, 424
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 5 cut(s) 46, 151, 216, 340, 488
CciI TCATGA 1 cut(s) 13
CfoI GCGC 3 cut(s) 41, 195, 269
ClaI ATCGAT 1 cut(s) 275
CviAII CATG 4 cut(s) 14, 308, 397, 491
DdeI CTNAG 1 cut(s) 239
DinI GGCGCC 1 cut(s) 268
DpnI GATC 4 cut(s) 167, 189, 312, 482
DpnII GATC 4 cut(s) 165, 187, 310, 480
DraIII CACNNNGTG 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 53, 385
EarI CTCTTC 2 cut(s) 53, 385
Ecl136II GAGCTC 1 cut(s) 329
Eco24I GRGCYC 2 cut(s) 21, 331
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 2 cut(s) 182, 324
EcoICRI GAGCTC 1 cut(s) 329
EcoRI GAATTC 3 cut(s) 208, 355, 466
EcoT38I GRGCYC 2 cut(s) 21, 331
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 4 cut(s) 17, 311, 400, 494
FaiI YATR 9 cut(s) 15, 272, 309, 345, 398, 492, 523, 525, 527
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 2 cut(s) 57, 164
FatI CATG 4 cut(s) 13, 307, 396, 490
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 42, 259, 305
FriOI GRGCYC 2 cut(s) 21, 331
Fsp4HI GCNGC 3 cut(s) 42, 259, 305
FspBI CTAG 1 cut(s) 501
FspI TGCGCA 1 cut(s) 40
GlaI GCGC 3 cut(s) 40, 194, 268
GluI GCNGC 3 cut(s) 42, 259, 305
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 218
HhaI GCGC 3 cut(s) 41, 195, 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 4 cut(s) 17, 311, 400, 494
Hin6I GCGC 3 cut(s) 39, 193, 267
HinP1I GCGC 3 cut(s) 39, 193, 267
HinfI GANTC 1 cut(s) 295
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 2 cut(s) 133, 253
Hpy188I TCNGA 3 cut(s) 106, 351, 475
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 2 cut(s) 133, 253
Hpy99I CGWCG 2 cut(s) 110, 376
HpyCH4III ACNGT 2 cut(s) 205, 531
HpyCH4V TGCA 6 cut(s) 48, 69, 81, 261, 283, 304
HpyF10VI GCNNNNNNNGC 7 cut(s) 36, 45, 159, 224, 264, 335, 344
HpyF3I CTNAG 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 17, 311, 400, 494
HspAI GCGC 3 cut(s) 39, 193, 267
KasI GGCGCC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 4 cut(s) 165, 187, 310, 480
LguI GCTCTTC 1 cut(s) 385
LmnI GCTCC 2 cut(s) 35, 352
LpnPI CCDG 6 cut(s) 91, 200, 299, 441, 476, 500
Lsp1109I GCAGC 3 cut(s) 53, 245, 316
LweI GCATC 2 cut(s) 56, 100
MaeI CTAG 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 449
MalI GATC 4 cut(s) 167, 189, 312, 482
MboI GATC 4 cut(s) 165, 187, 310, 480
MboII GAAGA 7 cut(s) 70, 75, 301, 364, 372, 375, 510
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 3 cut(s) 21, 331, 380
MluCI AATT 5 cut(s) 119, 208, 355, 454, 466
Mly113I GGCGCC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 7 cut(s) 43, 178, 190, 217, 228, 373, 400
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 1 cut(s) 275
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 7 cut(s) 36, 45, 159, 224, 264, 335, 344
NarI GGCGCC 1 cut(s) 267
NdeII GATC 4 cut(s) 165, 187, 310, 480
NlaIII CATG 4 cut(s) 17, 311, 400, 494
NlaIV GGNNCC 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 324
PagI TCATGA 1 cut(s) 13
PaqCI CACCTGC 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 43, 260, 306
PluTI GGCGCC 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 324
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 331
SapI GCTCTTC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 3 cut(s) 42, 259, 305
Sau3AI GATC 4 cut(s) 165, 187, 310, 480
SduI GDGCHC 3 cut(s) 21, 331, 380
SetI ASST 6 cut(s) 32, 46, 80, 331, 502, 515
SfaNI GCATC 2 cut(s) 56, 100
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 324
SlaI CTCGAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 5 cut(s) 119, 208, 355, 454, 466
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 331
TaaI ACNGT 2 cut(s) 205, 531
TaqI TCGA 2 cut(s) 275, 325
TasI AATT 5 cut(s) 119, 208, 355, 454, 466
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 2 cut(s) 60, 424
TseI GCWGC 3 cut(s) 41, 258, 304
TspDTI ATGAA 3 cut(s) 17, 459, 510
TspRI CASTG 2 cut(s) 60, 424
XapI RAATTY 4 cut(s) 119, 208, 355, 466
XhoI CTCGAG 1 cut(s) 324
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.