Rh1DG363000

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016708
Physical Location & Seq
Reverse (-)
58977490 .. 58978032
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG363000.1

Sequence Viewer

Length: 543 bp
ATGAAAGGAACTCATGAGCCTCGTTCAAGCTCATCCTGTGCAGCTTGCAAGTTGTTGAAGAGGAGATGCGTCCCGACCTGCATATTTGCACCGCATTTTCGCTCTGACGAGCCCTCGAAGTTTGCCAAAGTTCACAAAGTGTTTGGGGCAAGCAATGTAAGCAAGATCCTTAGTGAAGTGCCTGAGGAGCAGAGGGAGGACACCGTAAGTTCACTCGCGTATGAGGCCGAGGCTCGGCTCAGAGACCCTGTTTATGGTTGCATTGGCGCCATAGCTATGCTGCAGGGAAAGATGGTGGAGCTTCAACATGATCTCGCTATTGCTAGAGCTCGCCTCGCTTGTTATGGCCATCCAAGTTCTTCATCACTTTCTTCTTCTTCTTCTGCGTCTTCTTATACAATGTTAGAGGACCTTACTGAGGCTAACTTCGCTGGTCTTCCTGCTTTTAGTGGATTTAACAATGCCTTCAGTCAGAGCTCAACTGAATTTATGAGCCAACATGGAACAAACAGTGGTTTTAGCTATCCCCCATATATACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

180

Amino Acids

19.51

Weight (kDa)

6.99

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 109 5.9e-38 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11090
fragaria_vesca FvH4_7g24810
malus_domestica MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica Prupe.2G253300_v2.0.a1
pyrus_communis pycom07g20340
rosa_chinensis RchiOBHm_Chr1g0370681
rosa_laevigata RLG00000027018
rosa_roxburghii Rroxscaffold_4G00286320
rosa_rugosa Rorug01G0358400
rosa_samantha Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana Rw1G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 218
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 3 cut(s) 234, 254, 418
AgsI TTSAA 3 cut(s) 27, 58, 305
AluBI AGCT 7 cut(s) 30, 44, 275, 301, 329, 477, 522
AluI AGCT 7 cut(s) 30, 44, 275, 301, 329, 477, 522
Alw21I GWGCWC 2 cut(s) 331, 479
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 160
AoxI GGCC 2 cut(s) 225, 346
ApeKI GCWGC 2 cut(s) 41, 280
ApoI RAATTY 1 cut(s) 485
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 409
AvaII GGWCC 1 cut(s) 409
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 3 cut(s) 114, 331, 479
BbsI GAAGAC 2 cut(s) 381, 428
Bbv12I GWGCWC 2 cut(s) 331, 479
BbvI GCAGC 2 cut(s) 53, 267
BccI CCATC 2 cut(s) 286, 357
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 42, 281
BlsI GCNGC 2 cut(s) 43, 282
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 2 cut(s) 381, 428
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 254, 418
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 2 cut(s) 32, 349
BseLI CCNNNNNNNGG 3 cut(s) 234, 254, 418
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 3 cut(s) 174, 253, 408
BseRI GAGGAG 2 cut(s) 76, 200
BseXI GCAGC 2 cut(s) 53, 267
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 227, 348
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 331, 479
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 234, 254, 418
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 227, 348
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 3 cut(s) 114, 331, 479
Bsp143I GATC 2 cut(s) 165, 310
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 227, 348
BspCNI CTCAG 3 cut(s) 175, 252, 409
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 165, 310
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 205, 512
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 3 cut(s) 46, 151, 331
BstDEI CTNAG 4 cut(s) 170, 183, 239, 417
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 32, 349
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 2 cut(s) 168, 313
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 165, 310
BstMWI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 428
BstSFI CTRYAG 1 cut(s) 281
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 53, 267
BstV2I GAAGAC 2 cut(s) 381, 428
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 227, 348
BtsCI GGATG 2 cut(s) 32, 349
BtsIMutI CAGTG 1 cut(s) 517
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 46, 151, 331
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 2 cut(s) 58, 375
CviAII CATG 3 cut(s) 14, 308, 500
DdeI CTNAG 4 cut(s) 170, 183, 239, 417
DinI GGCGCC 1 cut(s) 268
DpnI GATC 2 cut(s) 167, 312
DpnII GATC 2 cut(s) 165, 310
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 2 cut(s) 329, 477
Eco24I GRGCYC 3 cut(s) 114, 331, 479
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 2 cut(s) 329, 477
Eco57I CTGAAG 1 cut(s) 451
Eco81I CCTNAGG 1 cut(s) 183
EcoICRI GAGCTC 2 cut(s) 329, 477
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 409
EcoT38I GRGCYC 3 cut(s) 114, 331, 479
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 3 cut(s) 17, 311, 503
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 13, 307, 499
Fnu4HI GCNGC 2 cut(s) 42, 281
FokI GGATG 2 cut(s) 19, 336
FriOI GRGCYC 3 cut(s) 114, 331, 479
Fsp4HI GCNGC 2 cut(s) 42, 281
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 268
GluI GCNGC 2 cut(s) 42, 281
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 227, 348
HgaI GACGC 2 cut(s) 58, 375
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 17, 311, 503
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
Hpy166II GTNNAC 2 cut(s) 133, 212
Hpy188I TCNGA 3 cut(s) 106, 242, 474
Hpy188III TCNNGA 2 cut(s) 14, 73
Hpy8I GTNNAC 2 cut(s) 133, 212
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 205, 512
HpyCH4V TGCA 6 cut(s) 41, 48, 81, 89, 261, 283
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 428
HpyF3I CTNAG 4 cut(s) 170, 183, 239, 417
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 17, 311, 503
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 2 cut(s) 165, 310
LmnI GCTCC 2 cut(s) 187, 298
LpnPI CCDG 7 cut(s) 49, 91, 195, 261, 269, 417, 453
Lsp1109I GCAGC 2 cut(s) 53, 267
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 324
MalI GATC 2 cut(s) 167, 312
MboI GATC 2 cut(s) 165, 310
MboII GAAGA 8 cut(s) 70, 351, 363, 366, 369, 372, 381, 428
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 3 cut(s) 114, 331, 479
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 1 cut(s) 485
MluNI TGGCCA 1 cut(s) 348
Mly113I GGCGCC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 348
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 428
NarI GGCGCC 1 cut(s) 267
NdeII GATC 2 cut(s) 165, 310
NlaIII CATG 3 cut(s) 17, 311, 503
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 2 cut(s) 214, 253
PagI TCATGA 1 cut(s) 13
PkrI GCNGC 2 cut(s) 43, 282
PluTI GGCGCC 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 409
Psp124BI GAGCTC 2 cut(s) 331, 479
Psp5II RGGWCCY 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 409
PspPPI RGGWCCY 1 cut(s) 409
PstI CTGCAG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 2 cut(s) 331, 479
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 42, 281
Sau3AI GATC 2 cut(s) 165, 310
Sau96I GGNCC 1 cut(s) 409
SduI GDGCHC 3 cut(s) 114, 331, 479
SetI ASST 9 cut(s) 32, 46, 80, 277, 303, 331, 414, 479, 524
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 281
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 1 cut(s) 485
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 2 cut(s) 331, 479
TaaI ACNGT 2 cut(s) 205, 512
TaqI TCGA 1 cut(s) 116
TasI AATT 1 cut(s) 485
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 517
TseI GCWGC 2 cut(s) 41, 280
TspDTI ATGAA 2 cut(s) 17, 351
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 409
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 1 cut(s) 485
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.