FvH4_7g24810

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016708
Physical Location & Seq
Reverse (-)
19084708 .. 19085247
540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24810.t1

Sequence Viewer

Length: 540 bp
ATGAAAGGAACTCATGCGCCTCGCTCAAGCTCATCCTGTGCAGCTTGCAAGTTGTTGAAGAGGAGATGCGTCCCAACCTGCATATTTGCACCGCATTTTCGCTCCGACGAGCCGTTGAAGTTTGCCAAAGTTCACAAAGTGTTTGGGGCAAGCAATGTGAGCAAGATCCTTAGTGAAGTGCCTGAGGAGCAGAGGGAGGACACCGTAAGTTCACTCGCGTATGAGGCCGAGGTGAGGCTCAGAGACCCTGTTTATGGTTGCATTGGCGCCATAGCTATGCTGCAGGGAAAGATGGTGGAGCTTCAACATGATCTTGCCATTGCTAGAGCTCGTCTCTCTTCTTATGGCCATCCAACTTCATCAGTTTCTTCTACTTCTGCGTCTTCTTATGCAATGTTAGAGGATCACCTTGGTGAGGCTAACTTCGCTGGTTTTCCTGCTTGTAGTGGATTTAGCAATGGCTTCAGTCAGAGCTCAACTGAATTTATAAGCCAACATGGAACAACCGGTGGTTTTAGCTATCCCCCATATATACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

180

Amino Acids

19.32

Weight (kDa)

7.66

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 109 2.8e-37 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11090
fragaria_vesca FvH4_7g24810
malus_domestica MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica Prupe.2G253300_v2.0.a1
pyrus_communis pycom07g20340
rosa_chinensis RchiOBHm_Chr1g0370681
rosa_laevigata RLG00000027018
rosa_roxburghii Rroxscaffold_4G00286320
rosa_rugosa Rorug01G0358400
rosa_samantha Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana Rw1G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 218
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 160, 411
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 3 cut(s) 234, 254, 415
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 3 cut(s) 58, 118, 305
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 7 cut(s) 30, 44, 275, 301, 329, 474, 519
AluI AGCT 7 cut(s) 30, 44, 275, 301, 329, 474, 519
Alw21I GWGCWC 2 cut(s) 331, 476
Alw26I GTCTC 2 cut(s) 237, 338
AlwI GGATC 2 cut(s) 160, 411
AoxI GGCC 2 cut(s) 225, 346
ApeKI GCWGC 2 cut(s) 41, 280
ApoI RAATTY 1 cut(s) 482
AsiGI ACCGGT 1 cut(s) 506
AspLEI GCGC 2 cut(s) 19, 269
AsuHPI GGTGA 3 cut(s) 244, 398, 425
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 331, 476
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 2 cut(s) 331, 476
BbvI GCAGC 2 cut(s) 53, 267
BccI CCATC 2 cut(s) 286, 357
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 237, 338
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 42, 281
BlsI GCNGC 2 cut(s) 43, 282
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 375
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpuEI CTTGAG 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 228, 409
BsaWI WCCGGW 1 cut(s) 506
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 254, 415
Bse118I RCCGGY 1 cut(s) 506
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 4 cut(s) 160, 318, 399, 463
BseDI CCNNGG 2 cut(s) 228, 409
BseGI GGATG 2 cut(s) 32, 349
BseLI CCNNNNNNNGG 3 cut(s) 234, 254, 415
BseMI GCAATG 4 cut(s) 160, 318, 399, 463
BseMII CTCAG 2 cut(s) 174, 253
BseRI GAGGAG 2 cut(s) 76, 200
BseXI GCAGC 2 cut(s) 53, 267
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 227, 348
BshNI GGYRCC 1 cut(s) 266
BshTI ACCGGT 1 cut(s) 506
BsiHKAI GWGCWC 2 cut(s) 331, 476
BsiSI CCGG 1 cut(s) 507
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 234, 254, 415
BsmAI GTCTC 2 cut(s) 237, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 227, 348
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 331, 476
Bsp143I GATC 3 cut(s) 165, 310, 403
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 227, 348
BspCNI CTCAG 2 cut(s) 175, 252
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 160, 411
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 237
BsrDI GCAATG 4 cut(s) 160, 318, 399, 463
BsrFI RCCGGY 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 228, 409
BssMI GATC 3 cut(s) 165, 310, 403
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 2 cut(s) 53, 343
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 46, 151
BstDEI CTNAG 3 cut(s) 170, 183, 239
BstENI CCTNNNNNAGG 1 cut(s) 413
BstF5I GGATG 2 cut(s) 32, 349
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 19, 269
BstKTI GATC 3 cut(s) 168, 313, 406
BstMAI GTCTC 2 cut(s) 237, 338
BstMBI GATC 3 cut(s) 165, 310, 403
BstMWI GCNNNNNNNGC 4 cut(s) 159, 187, 224, 425
BstSFI CTRYAG 1 cut(s) 281
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 53, 267
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 227, 348
BtsCI GGATG 2 cut(s) 32, 349
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 46, 151
CfoI GCGC 2 cut(s) 19, 269
Cfr10I RCCGGY 1 cut(s) 506
CseI GACGC 2 cut(s) 58, 369
CspAI ACCGGT 1 cut(s) 506
CviAII CATG 3 cut(s) 14, 308, 497
DdeI CTNAG 3 cut(s) 170, 183, 239
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 167, 312, 405
DpnII GATC 3 cut(s) 165, 310, 403
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 53, 343
EarI CTCTTC 2 cut(s) 53, 343
Ecl136II GAGCTC 2 cut(s) 329, 474
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 2 cut(s) 331, 476
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 2 cut(s) 329, 474
Eco57I CTGAAG 1 cut(s) 448
Eco81I CCTNAGG 1 cut(s) 183
EcoICRI GAGCTC 2 cut(s) 329, 474
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 2 cut(s) 331, 476
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 3 cut(s) 17, 311, 500
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 13, 307, 496
Fnu4HI GCNGC 2 cut(s) 42, 281
FokI GGATG 2 cut(s) 19, 336
FriOI GRGCYC 2 cut(s) 331, 476
Fsp4HI GCNGC 2 cut(s) 42, 281
FspBI CTAG 1 cut(s) 324
GlaI GCGC 2 cut(s) 18, 268
GluI GCNGC 2 cut(s) 42, 281
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 227, 348
HapII CCGG 1 cut(s) 507
HgaI GACGC 2 cut(s) 58, 369
HhaI GCGC 2 cut(s) 19, 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 17, 311, 500
Hin6I GCGC 2 cut(s) 17, 267
HinP1I GCGC 2 cut(s) 17, 267
HpaII CCGG 1 cut(s) 507
HphI GGTGA 3 cut(s) 244, 398, 425
Hpy166II GTNNAC 2 cut(s) 133, 212
Hpy188I TCNGA 3 cut(s) 106, 242, 471
Hpy8I GTNNAC 2 cut(s) 133, 212
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 7 cut(s) 41, 48, 81, 89, 261, 283, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 187, 224, 425
HpyF3I CTNAG 3 cut(s) 170, 183, 239
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 17, 311, 500
HspAI GCGC 2 cut(s) 17, 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 165, 310, 403
LmnI GCTCC 3 cut(s) 107, 187, 298
LpnPI CCDG 8 cut(s) 49, 91, 195, 261, 269, 414, 450, 520
Lsp1109I GCAGC 2 cut(s) 53, 267
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 324
MalI GATC 3 cut(s) 167, 312, 405
MboI GATC 3 cut(s) 165, 310, 403
MboII GAAGA 4 cut(s) 70, 330, 360, 375
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 331, 476
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 348
Mly113I GGCGCC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 129, 377
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 2 cut(s) 275, 411
Msp20I TGGCCA 1 cut(s) 348
MspI CCGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 4 cut(s) 159, 187, 224, 425
NarI GGCGCC 1 cut(s) 267
NdeII GATC 3 cut(s) 165, 310, 403
NlaIII CATG 3 cut(s) 17, 311, 500
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 411
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 2 cut(s) 43, 282
PluTI GGCGCC 1 cut(s) 270
PsiI TTATAA 1 cut(s) 488
Psp124BI GAGCTC 2 cut(s) 331, 476
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 2 cut(s) 275, 411
SacI GAGCTC 2 cut(s) 331, 476
SatI GCNGC 2 cut(s) 42, 281
Sau3AI GATC 3 cut(s) 165, 310, 403
SduI GDGCHC 2 cut(s) 331, 476
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 281
SfoI GGCGCC 1 cut(s) 268
SmiMI CAYNNNNRTG 2 cut(s) 275, 411
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 482
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 2 cut(s) 331, 476
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 205
TasI AATT 1 cut(s) 482
TseI GCWGC 2 cut(s) 41, 280
TspDTI ATGAA 2 cut(s) 17, 348
XagI CCTNNNNNAGG 1 cut(s) 413
XapI RAATTY 1 cut(s) 482
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.