RLG00000027018

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016708
Physical Location & Seq
Forward (+)
7702522 .. 7703070
549 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027018

Sequence Viewer

Length: 549 bp
ATGAAAGGAACTCATGAGACTCGTTCAGGTTCATCCTGTGCAGCTTGCAAGTTGTTGAAGAGGAGATGCGTCCCGACCTGCATATTTGCACCGCATTTTCGCTCTGACGAGCCCTCGAAGTTTGCCAAAGTTCACAAAGTGTTTGGGGCAAGCAATGTAAGCAAGATCCTTAGTGAAGTGCCCGAGGAGCAGAGGGAGGACACCGTAAGTTCACTCGCGTATGAGGCCGAGGCTCGGCTCAGAGACCCTGTTTATGGTTGCATTGGCGCCATAGCTATGCTGCAGGGAAAGATGGTGGAGCTTCAACATGATCTCGCTATTGCTAGAGCTCGTCTCGCTTTTTATGGCCATCCAAGTTCTTCATCAGTTTCTTCTTCTTCTTCTTCTGCGTCTTCTTATACAATGTTAGAGGATCACCTTACTGAGGCTAACTTCGCTGGTTTTCCTGCTTTTAGTGGATTTAACAATGGCTTCACTCAGAGCTCAACTGAATTTATGAGCCAACATGGAACAGCCAGTGGTTTTAGCTATCCCCCATATATACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

183

Amino Acids

19.73

Weight (kDa)

7.04

Isoelectric Point (pI)

62.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 109 6e-38 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11090
fragaria_vesca FvH4_7g24810
malus_domestica MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica Prupe.2G253300_v2.0.a1
pyrus_communis pycom07g20340
rosa_chinensis RchiOBHm_Chr1g0370681
rosa_laevigata RLG00000027018
rosa_roxburghii Rroxscaffold_4G00286320
rosa_rugosa Rorug01G0358400
rosa_samantha Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana Rw1G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 218
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 160, 420
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 3 cut(s) 234, 254, 424
AgsI TTSAA 2 cut(s) 58, 305
AluBI AGCT 6 cut(s) 44, 275, 301, 329, 483, 528
AluI AGCT 6 cut(s) 44, 275, 301, 329, 483, 528
Alw21I GWGCWC 2 cut(s) 331, 485
Alw26I GTCTC 3 cut(s) 11, 237, 338
AlwI GGATC 2 cut(s) 160, 420
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 2 cut(s) 225, 346
ApeKI GCWGC 2 cut(s) 41, 280
ApoI RAATTY 1 cut(s) 491
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 3 cut(s) 114, 331, 485
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 331, 485
BbvI GCAGC 2 cut(s) 53, 267
BccI CCATC 2 cut(s) 286, 357
BcoDI GTCTC 3 cut(s) 11, 237, 338
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 42, 281
BlsI GCNGC 2 cut(s) 43, 282
BmeT110I CYCGRG 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 384
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 183, 228
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 254, 424
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 183, 228
BseGI GGATG 2 cut(s) 32, 349
BseLI CCNNNNNNNGG 3 cut(s) 234, 254, 424
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 3 cut(s) 253, 414, 491
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 76, 200
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 53, 267
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 227, 348
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 331, 485
BsiHKCI CYCGRG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 234, 254, 424
BsmAI GTCTC 3 cut(s) 11, 237, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 227, 348
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 4 cut(s) 114, 183, 331, 485
Bsp143I GATC 3 cut(s) 165, 310, 412
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 227, 348
BspCNI CTCAG 3 cut(s) 252, 415, 490
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 160, 420
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 516
BssECI CCNNGG 2 cut(s) 183, 228
BssMI GATC 3 cut(s) 165, 310, 412
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 46, 151
BstDEI CTNAG 4 cut(s) 170, 239, 423, 477
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 32, 349
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 168, 313, 415
BstMAI GTCTC 3 cut(s) 11, 237, 338
BstMBI GATC 3 cut(s) 165, 310, 412
BstMWI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 434
BstSFI CTRYAG 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 53, 267
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 227, 348
BtsCI GGATG 2 cut(s) 32, 349
BtsIMutI CAGTG 1 cut(s) 523
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 46, 151
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 269
CseI GACGC 2 cut(s) 58, 378
CviAII CATG 3 cut(s) 14, 308, 506
DdeI CTNAG 4 cut(s) 170, 239, 423, 477
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 167, 312, 414
DpnII GATC 3 cut(s) 165, 310, 412
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 2 cut(s) 329, 483
Eco24I GRGCYC 3 cut(s) 114, 331, 485
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 2 cut(s) 329, 483
Eco88I CYCGRG 1 cut(s) 182
EcoICRI GAGCTC 2 cut(s) 329, 483
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoT38I GRGCYC 3 cut(s) 114, 331, 485
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 3 cut(s) 17, 311, 509
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 13, 307, 505
Fnu4HI GCNGC 2 cut(s) 42, 281
FokI GGATG 2 cut(s) 19, 336
FriOI GRGCYC 3 cut(s) 114, 331, 485
Fsp4HI GCNGC 2 cut(s) 42, 281
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 268
GluI GCNGC 2 cut(s) 42, 281
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 227, 348
HgaI GACGC 2 cut(s) 58, 378
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 17, 311, 509
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 133, 212
Hpy188I TCNGA 3 cut(s) 106, 242, 480
Hpy188III TCNNGA 2 cut(s) 14, 73
Hpy8I GTNNAC 2 cut(s) 133, 212
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 6 cut(s) 41, 48, 81, 89, 261, 283
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 434
HpyF3I CTNAG 4 cut(s) 170, 239, 423, 477
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 17, 311, 509
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 165, 310, 412
LmnI GCTCC 2 cut(s) 187, 298
LpnPI CCDG 8 cut(s) 12, 49, 91, 261, 269, 423, 459, 529
Lsp1109I GCAGC 2 cut(s) 53, 267
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 324
MalI GATC 3 cut(s) 167, 312, 414
MboI GATC 3 cut(s) 165, 310, 412
MboII GAAGA 8 cut(s) 70, 351, 363, 366, 369, 372, 375, 384
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 4 cut(s) 114, 183, 331, 485
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 1 cut(s) 491
MluNI TGGCCA 1 cut(s) 348
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 9 cut(s) 54, 124, 178, 186, 190, 217, 223, 403, 418
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 348
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 434
NarI GGCGCC 1 cut(s) 267
NdeII GATC 3 cut(s) 165, 310, 412
NlaIII CATG 3 cut(s) 17, 311, 509
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 2 cut(s) 214, 253
PagI TCATGA 1 cut(s) 13
PkrI GCNGC 2 cut(s) 43, 282
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 2 cut(s) 331, 485
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 2 cut(s) 331, 485
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 42, 281
Sau3AI GATC 3 cut(s) 165, 310, 412
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 4 cut(s) 114, 183, 331, 485
SetI ASST 9 cut(s) 31, 46, 80, 277, 303, 331, 420, 485, 530
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 281
SfoI GGCGCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 1 cut(s) 491
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 2 cut(s) 331, 485
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 116
TasI AATT 1 cut(s) 491
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 523
TseI GCWGC 2 cut(s) 41, 280
TspDTI ATGAA 3 cut(s) 17, 21, 351
TspRI CASTG 1 cut(s) 523
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 1 cut(s) 491
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.