Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016708

Physical Location & Seq

Genomic Coordinates Reverse (-)

26673933 .. 26674988

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G253300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAACATGAAGGGAAGTCATGAGCCTCGTTCAAGCTCATCCTGTGCAGCTTGCAAGTTACTGAAAAGAAAGTGCAGCCCCACCTGCATTTTCGCACCATATTTTCTCCCCGACGAGCCCAAAAAGTTTGCCAAAGTTCATAAAGTGTTTGGAGCAAGCAATGTGAGCAAGATCCTAACTGAAGTGCCGGAGGAACAACGCGAGGACACGGTGAATTCGCTGGCTTATGAGGCAGAGGCAAGGCTGAGAGATCCGGTTTATGGTTGCATTGGTGCCATAGCTATGTTGCAGAGGAAGATGATTGAGCTGCAACATGATCTGGCTATTGCTAGAGCCCGTCTTGCTTGTTATGCTTCCAATTCTTTATCATCATCATCAACAACAGCTTCTGCTTCTTCTTGTTATGGTGTCTTGGATGATCAGCTCAGTGAGGCTGCTTTCAGTGCGGTTGGCTTTCCTGCCTGCAGCGGATTTAGTAATAGTTTCATGAGCCAGAGTGCACCTGAACTGATCAGCCATAGCCAGCATGGACAAACTAGTGATTTTAGCTGTGCCCCATATATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

190

Amino Acids

20.41

Weight (kDa)

6.93

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11090
fragaria_vesca	FvH4_7g24810
malus_domestica	MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica	Prupe.2G253300_v2.0.a1
pyrus_communis	pycom07g20340
rosa_chinensis	RchiOBHm_Chr1g0370681
rosa_laevigata	RLG00000027018
rosa_roxburghii	Rroxscaffold_4G00286320
rosa_rugosa	Rorug01G0358400
rosa_samantha	Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana	Rw1G032390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	201
AciI	CCGC	2 cut(s)	446, 468
AclWI	GGATC	2 cut(s)	166, 245
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	33
AhlI	ACTAGT	1 cut(s)	536
AluBI	AGCT	7 cut(s)	36, 50, 281, 307, 386, 424, 549
AluI	AGCT	7 cut(s)	36, 50, 281, 307, 386, 424, 549
Alw21I	GWGCWC	1 cut(s)	502
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	166, 245
AlwNI	CAGNNNCTG	1 cut(s)	389
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	5 cut(s)	47, 75, 307, 434, 465
ApoI	RAATTY	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	2 cut(s)	502, 556
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	120, 337
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	5 cut(s)	59, 87, 294, 421, 477
BclI	TGATCA	2 cut(s)	418, 510
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	2 cut(s)	330, 537
BfmI	CTRYAG	1 cut(s)	463
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	48, 76, 308, 435, 466
BlsI	GCNGC	5 cut(s)	49, 77, 309, 436, 467
BmiI	GGNNCC	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	38, 421
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	236, 439
BseSI	GKGCMC	2 cut(s)	502, 556
BseXI	GCAGC	5 cut(s)	59, 87, 294, 421, 477
BsgI	GTGCAG	2 cut(s)	66, 94
Bsh1236I	CGCG	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	188, 254
BslI	CCNNNNNNNGG	1 cut(s)	260
Bsp1286I	GDGCHC	4 cut(s)	120, 337, 502, 556
Bsp143I	GATC	5 cut(s)	171, 250, 316, 418, 510
BspACI	CCGC	2 cut(s)	446, 468
BspCNI	CTCAG	2 cut(s)	237, 438
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	2 cut(s)	19, 486
BspLI	GGNNCC	1 cut(s)	274
BspMAI	CTGCAG	1 cut(s)	467
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	166, 245
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	166
BssMI	GATC	5 cut(s)	171, 250, 316, 418, 510
Bst4CI	ACNGT	2 cut(s)	211, 567
BstC8I	GCNNGC	5 cut(s)	52, 157, 222, 463, 524
BstDEI	CTNAG	2 cut(s)	245, 425
BstF5I	GGATG	2 cut(s)	38, 421
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	5 cut(s)	174, 253, 319, 421, 513
BstMBI	GATC	5 cut(s)	171, 250, 316, 418, 510
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 165, 230, 341, 350, 443
BstSFI	CTRYAG	1 cut(s)	463
BstSLI	GKGCMC	2 cut(s)	502, 556
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	5 cut(s)	59, 87, 294, 421, 477
BstX2I	RGATCY	2 cut(s)	171, 250
BstYI	RGATCY	2 cut(s)	171, 250
BtsCI	GGATG	2 cut(s)	38, 421
BtsIMutI	CAGTG	2 cut(s)	433, 448
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	5 cut(s)	52, 157, 222, 463, 524
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	2 cut(s)	19, 486
CviAII	CATG	5 cut(s)	7, 20, 314, 487, 527
DdeI	CTNAG	2 cut(s)	245, 425
DpnI	GATC	5 cut(s)	173, 252, 318, 420, 512
DpnII	GATC	5 cut(s)	171, 250, 316, 418, 510
Eco24I	GRGCYC	2 cut(s)	120, 337
Eco57I	CTGAAG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	120, 337
FaeI	CATG	5 cut(s)	10, 23, 317, 490, 530
FatI	CATG	5 cut(s)	6, 19, 313, 486, 526
FbaI	TGATCA	2 cut(s)	418, 510
Fnu4HI	GCNGC	5 cut(s)	48, 76, 308, 435, 466
FokI	GGATG	2 cut(s)	25, 428
FriOI	GRGCYC	2 cut(s)	120, 337
Fsp4HI	GCNGC	5 cut(s)	48, 76, 308, 435, 466
FspBI	CTAG	2 cut(s)	330, 537
GluI	GCNGC	5 cut(s)	48, 76, 308, 435, 466
HapII	CCGG	2 cut(s)	188, 254
Hin1II	CATG	5 cut(s)	10, 23, 317, 490, 530
HpaII	CCGG	2 cut(s)	188, 254
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188III	TCNNGA	2 cut(s)	20, 487
Hpy8I	GTNNAC	1 cut(s)	500
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	2 cut(s)	211, 567
HpyCH4V	TGCA	9 cut(s)	47, 54, 75, 87, 267, 289, 310, 465, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 165, 230, 341, 350, 443
HpyF3I	CTNAG	2 cut(s)	245, 425
Hsp92II	CATG	5 cut(s)	10, 23, 317, 490, 530
Ksp22I	TGATCA	2 cut(s)	418, 510
Kzo9I	GATC	5 cut(s)	171, 250, 316, 418, 510
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	5 cut(s)	59, 87, 294, 421, 477
MaeI	CTAG	2 cut(s)	330, 537
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	5 cut(s)	173, 252, 318, 420, 512
MboI	GATC	5 cut(s)	171, 250, 316, 418, 510
MboII	GAAGA	2 cut(s)	307, 387
MflI	RGATCY	2 cut(s)	171, 250
MhlI	GDGCHC	4 cut(s)	120, 337, 502, 556
MluCI	AATT	2 cut(s)	214, 358
MnlI	CCTC	7 cut(s)	36, 184, 196, 223, 229, 285, 424
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	468
MspI	CCGG	2 cut(s)	188, 254
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	6 cut(s)	84, 165, 230, 341, 350, 443
NdeII	GATC	5 cut(s)	171, 250, 316, 418, 510
NlaIII	CATG	5 cut(s)	10, 23, 317, 490, 530
NlaIV	GGNNCC	1 cut(s)	274
PagI	TCATGA	2 cut(s)	19, 486
PaqCI	CACCTGC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	49, 77, 309, 436, 467
PspN4I	GGNNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	171, 250
RseI	CAYNNNNRTG	1 cut(s)	281
SatI	GCNGC	5 cut(s)	48, 76, 308, 435, 466
Sau3AI	GATC	5 cut(s)	171, 250, 316, 418, 510
SduI	GDGCHC	4 cut(s)	120, 337, 502, 556
SetI	ASST	9 cut(s)	38, 52, 86, 283, 309, 388, 426, 505, 551
SfcI	CTRYAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	281
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	2 cut(s)	214, 358
SsiI	CCGC	2 cut(s)	446, 468
SspMI	CTAG	2 cut(s)	330, 537
TaaI	ACNGT	2 cut(s)	211, 567
TasI	AATT	2 cut(s)	214, 358
TscAI	CASTG	2 cut(s)	433, 448
TseI	GCWGC	5 cut(s)	47, 75, 307, 434, 465
TspDTI	ATGAA	4 cut(s)	17, 23, 128, 475
TspRI	CASTG	2 cut(s)	433, 448
VneI	GTGCAC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XspI	CTAG	2 cut(s)	330, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.