MD01G1155900.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016708
Physical Location & Seq
Reverse (-)
26374088 .. 26374618
531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1155900.v1.1.491

Sequence Viewer

Length: 531 bp
ATGAAGGGAAGTCATGAACCCCGTTCAAGCTCATCTTGCGCAGCTTGCAAGTCACTCAAGAGAAGATGCACTCCCACCTGCATTTTCGCACCCTATTTCCGCTCCGACGAGCCCAAAAAATTCGCCCAAGTTCACAAAGTGTTCGGAGCAAGCAATGTGAGCAAGATCCTAACCGAAGTCCCCGAGGATCAGCGCGCGGACACGGTGAATTCGCTGGCTTATGAGGCCGAAGCAAGGCTGAGAGACCCTGTTTACGGCTGCATTGGCGCCATATCTATGTTGGAAAGGAAGATGATTCAGTTACAGCATGATCTGGCCATTGCTCGAGCTCGTCTCGTTTGCTATGCTCCGAAGAATTCGCCCTCATCGTCGTCGTCATGTTCTTGTTGTCCCATGTTAGATGAGGGTACTTTCTCTGGATTTCCGGCTTGGAGTGGATTAAACGGTAACAATTTCAGCCAGAACGCATCTGAATTGATCAGCCAGCATGGACAAACTAGTGATTTTAGCTATTCGTCATATATACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

177

Amino Acids

19.28

Weight (kDa)

8.37

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 109 9.5e-39 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11090
fragaria_vesca FvH4_7g24810
malus_domestica MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica Prupe.2G253300_v2.0.a1
pyrus_communis pycom07g20340
rosa_chinensis RchiOBHm_Chr1g0370681
rosa_laevigata RLG00000027018
rosa_roxburghii Rroxscaffold_4G00286320
rosa_rugosa Rorug01G0358400
rosa_samantha Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana Rw1G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 2 cut(s) 195, 197
AciI CCGC 2 cut(s) 100, 197
AclWI GGATC 2 cut(s) 160, 195
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 3 cut(s) 119, 208, 355
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 139
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 2 cut(s) 234, 254
AgsI TTSAA 1 cut(s) 27
AhlI ACTAGT 1 cut(s) 497
AluBI AGCT 4 cut(s) 30, 44, 329, 510
AluI AGCT 4 cut(s) 30, 44, 329, 510
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 237, 338
AlwI GGATC 2 cut(s) 160, 195
Ama87I CYCGRG 2 cut(s) 182, 324
AoxI GGCC 2 cut(s) 225, 315
ApeKI GCWGC 2 cut(s) 41, 258
ApoI RAATTY 3 cut(s) 119, 208, 355
AspLEI GCGC 4 cut(s) 41, 195, 197, 269
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 2 cut(s) 182, 324
BalI TGGCCA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 114, 331
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 53, 245
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 237, 338
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 42, 259
BlsI GCNGC 2 cut(s) 43, 260
BmeT110I CYCGRG 2 cut(s) 182, 324
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 2 cut(s) 56, 476
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpuEI CTTGAG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 254
Bse3DI GCAATG 2 cut(s) 160, 318
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 234, 254
BseMI GCAATG 2 cut(s) 160, 318
BseMII CTCAG 1 cut(s) 230
BsePI GCGCGC 1 cut(s) 193
BseXI GCAGC 2 cut(s) 53, 245
Bsh1236I CGCG 2 cut(s) 195, 197
BshFI GGCC 2 cut(s) 227, 317
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 2 cut(s) 182, 324
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 2 cut(s) 164, 375
BslI CCNNNNNNNGG 2 cut(s) 234, 254
BsmAI GTCTC 2 cut(s) 237, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 164, 375
BsnI GGCC 2 cut(s) 227, 317
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 2 cut(s) 182, 324
Bsp1286I GDGCHC 2 cut(s) 114, 331
Bsp143I GATC 4 cut(s) 165, 187, 310, 477
BspACI CCGC 2 cut(s) 100, 197
BspANI GGCC 2 cut(s) 227, 317
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 2 cut(s) 195, 197
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 160, 195
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 160, 318
BssECI CCNNGG 1 cut(s) 183
BssHII GCGCGC 1 cut(s) 193
BssMI GATC 4 cut(s) 165, 187, 310, 477
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 205, 446
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 46, 151, 195, 216, 485
BstDEI CTNAG 1 cut(s) 239
BstFNI CGCG 2 cut(s) 195, 197
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 4 cut(s) 41, 195, 197, 269
BstKTI GATC 4 cut(s) 168, 190, 313, 480
BstMAI GTCTC 2 cut(s) 237, 338
BstMBI GATC 4 cut(s) 165, 187, 310, 477
BstMWI GCNNNNNNNGC 5 cut(s) 36, 45, 159, 224, 264
BstUI CGCG 2 cut(s) 195, 197
BstV1I GCAGC 2 cut(s) 53, 245
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 227, 317
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 5 cut(s) 46, 151, 195, 216, 485
CciI TCATGA 1 cut(s) 13
CfoI GCGC 4 cut(s) 41, 195, 197, 269
Csp6I GTAC 1 cut(s) 408
CviAII CATG 5 cut(s) 14, 308, 378, 394, 488
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 1 cut(s) 239
DinI GGCGCC 1 cut(s) 268
DpnI GATC 4 cut(s) 167, 189, 312, 479
DpnII GATC 4 cut(s) 165, 187, 310, 477
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 329
Eco24I GRGCYC 2 cut(s) 114, 331
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 329
Eco88I CYCGRG 2 cut(s) 182, 324
EcoICRI GAGCTC 1 cut(s) 329
EcoRI GAATTC 2 cut(s) 208, 355
EcoT38I GRGCYC 2 cut(s) 114, 331
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 5 cut(s) 17, 311, 381, 397, 491
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 2 cut(s) 164, 375
FatI CATG 5 cut(s) 13, 307, 377, 393, 487
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 42, 259
FriOI GRGCYC 2 cut(s) 114, 331
Fsp4HI GCNGC 2 cut(s) 42, 259
FspBI CTAG 1 cut(s) 498
FspI TGCGCA 1 cut(s) 40
GlaI GCGC 4 cut(s) 40, 194, 196, 268
GluI GCNGC 2 cut(s) 42, 259
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 227, 317
HapII CCGG 1 cut(s) 425
HhaI GCGC 4 cut(s) 41, 195, 197, 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 17, 311, 381, 397, 491
Hin6I GCGC 4 cut(s) 39, 193, 195, 267
HinP1I GCGC 4 cut(s) 39, 193, 195, 267
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 425
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 2 cut(s) 133, 253
Hpy188I TCNGA 5 cut(s) 106, 146, 351, 472, 530
Hpy188III TCNNGA 3 cut(s) 14, 58, 417
Hpy8I GTNNAC 2 cut(s) 133, 253
Hpy99I CGWCG 3 cut(s) 110, 373, 376
HpyCH4III ACNGT 2 cut(s) 205, 446
HpyCH4V TGCA 4 cut(s) 48, 69, 81, 261
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 45, 159, 224, 264
HpyF3I CTNAG 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 17, 311, 381, 397, 491
HspAI GCGC 4 cut(s) 39, 193, 195, 267
KasI GGCGCC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 4 cut(s) 165, 187, 310, 477
LmnI GCTCC 3 cut(s) 107, 146, 352
LpnPI CCDG 8 cut(s) 91, 200, 261, 299, 402, 438, 473, 497
Lsp1109I GCAGC 2 cut(s) 53, 245
LweI GCATC 2 cut(s) 56, 476
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 3 cut(s) 51, 300, 446
MalI GATC 4 cut(s) 167, 189, 312, 479
MbiI CCGCTC 1 cut(s) 102
MboI GATC 4 cut(s) 165, 187, 310, 477
MboII GAAGA 3 cut(s) 75, 301, 364
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 114, 331
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 5 cut(s) 119, 208, 355, 451, 473
MluNI TGGCCA 1 cut(s) 317
Mly113I GGCGCC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 129, 261
MnlI CCTC 4 cut(s) 178, 217, 373, 397
Mox20I TGGCCA 1 cut(s) 317
MscI TGGCCA 1 cut(s) 317
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 1 cut(s) 425
MvnI CGCG 2 cut(s) 195, 197
MwoI GCNNNNNNNGC 5 cut(s) 36, 45, 159, 224, 264
NarI GGCGCC 1 cut(s) 267
NdeII GATC 4 cut(s) 165, 187, 310, 477
NlaIII CATG 5 cut(s) 17, 311, 381, 397, 491
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 51
NsbI TGCGCA 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 324
PagI TCATGA 1 cut(s) 13
PaqCI CACCTGC 1 cut(s) 86
PauI GCGCGC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 43, 260
PluTI GGCGCC 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 324
PsuI RGATCY 1 cut(s) 165
PteI GCGCGC 1 cut(s) 193
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 2 cut(s) 42, 259
Sau3AI GATC 4 cut(s) 165, 187, 310, 477
SduI GDGCHC 2 cut(s) 114, 331
SetI ASST 5 cut(s) 32, 46, 80, 331, 512
SfaNI GCATC 2 cut(s) 56, 476
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 324
SlaI CTCGAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 56, 324
SmoI CTYRAG 2 cut(s) 56, 324
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 5 cut(s) 119, 208, 355, 451, 473
SsiI CCGC 2 cut(s) 100, 197
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 331
TaaI ACNGT 2 cut(s) 205, 446
TaqI TCGA 1 cut(s) 325
TasI AATT 5 cut(s) 119, 208, 355, 451, 473
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 2 cut(s) 41, 258
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 17, 30
XapI RAATTY 3 cut(s) 119, 208, 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 324
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.