Rroxscaffold_4G00286320

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016708
Physical Location & Seq
Forward (+)
7387748 .. 7388284
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286320.1

Sequence Viewer

Length: 537 bp
ATGAAAGGAACTCATGAGCCTCGTTCAAGCTCATCCTGTGCAGCTTGCAAGTTGTTGAAGAGGAGATGCGTCCCGACCTGCATATTTGCACCGCATTTTCGCTCTGACGAGCCCTCGAAGTTTGCCAAAGTTCACAAAGTGTTTGGGGCAAGCAATGTAAGCAAGATCCTTAGTGAAGTGCCTGAGGAGCAGAGAGAGGACACCGTAAGTTCACTCGCGTATGAGGCCGAGGCTCGGCTCAGAGACCCTGTTTATGGTTGCATTGGCGCCATAGCTATGCTGCAGGGAAAGATGGTGGAGCTTCAACATGATCTCGCTATTGCTAGAGCTCGTCTCGCGTGTTATGGCCATCCAAGTTCTTCATCAGTTTCTTCTGCGTCTTCTTATACAATGTTAGAGGATCACCTTACTGAGGCTAACTTCGCTGGTCTTCCTGCTTTTAGTGGATTTAACAATGCCTTCAGTCAGAGCTCAACTGAATTTATGAGCCAACATGGAACAAACAGTGGTTTTAGCTATCCCCCATATATACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

178

Amino Acids

19.38

Weight (kDa)

7.04

Isoelectric Point (pI)

64.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 109 5.7e-38 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11090
fragaria_vesca FvH4_7g24810
malus_domestica MD01G1155900.v1.1 MD07G1224700.v1.1
prunus_persica Prupe.2G253300_v2.0.a1
pyrus_communis pycom07g20340
rosa_chinensis RchiOBHm_Chr1g0370681
rosa_laevigata RLG00000027018
rosa_roxburghii Rroxscaffold_4G00286320
rosa_rugosa Rorug01G0358400
rosa_samantha Rh1AG368100 Rh1CG345600 Rh1DG363000
rosa_wichuraiana Rw1G032390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 2 cut(s) 218, 338
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 160, 408
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 445
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 3 cut(s) 234, 254, 412
AgsI TTSAA 3 cut(s) 27, 58, 305
AluBI AGCT 7 cut(s) 30, 44, 275, 301, 329, 471, 516
AluI AGCT 7 cut(s) 30, 44, 275, 301, 329, 471, 516
Alw21I GWGCWC 2 cut(s) 331, 473
Alw26I GTCTC 2 cut(s) 237, 338
AlwI GGATC 2 cut(s) 160, 408
AoxI GGCC 2 cut(s) 225, 346
ApeKI GCWGC 2 cut(s) 41, 280
ApoI RAATTY 1 cut(s) 479
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 395
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 3 cut(s) 114, 331, 473
BbsI GAAGAC 2 cut(s) 372, 422
Bbv12I GWGCWC 2 cut(s) 331, 473
BbvI GCAGC 2 cut(s) 53, 267
BccI CCATC 2 cut(s) 286, 357
BcoDI GTCTC 2 cut(s) 237, 338
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 42, 281
BlsI GCNGC 2 cut(s) 43, 282
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 2 cut(s) 372, 422
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 254, 412
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 2 cut(s) 32, 349
BseLI CCNNNNNNNGG 3 cut(s) 234, 254, 412
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 3 cut(s) 174, 253, 402
BseRI GAGGAG 2 cut(s) 76, 200
BseXI GCAGC 2 cut(s) 53, 267
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 2 cut(s) 218, 338
BshFI GGCC 2 cut(s) 227, 348
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 331, 473
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 234, 254, 412
BsmAI GTCTC 2 cut(s) 237, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 227, 348
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 3 cut(s) 114, 331, 473
Bsp143I GATC 3 cut(s) 165, 310, 400
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 227, 348
BspCNI CTCAG 3 cut(s) 175, 252, 403
BspFNI CGCG 2 cut(s) 218, 338
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 160, 408
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 165, 310, 400
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 205, 506
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 46, 151
BstDEI CTNAG 4 cut(s) 170, 183, 239, 411
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 2 cut(s) 32, 349
BstFNI CGCG 2 cut(s) 218, 338
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 168, 313, 403
BstMAI GTCTC 2 cut(s) 237, 338
BstMBI GATC 3 cut(s) 165, 310, 400
BstMWI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 422
BstSFI CTRYAG 1 cut(s) 281
BstUI CGCG 2 cut(s) 218, 338
BstV1I GCAGC 2 cut(s) 53, 267
BstV2I GAAGAC 2 cut(s) 372, 422
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 227, 348
BtsCI GGATG 2 cut(s) 32, 349
BtsIMutI CAGTG 1 cut(s) 511
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 46, 151
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 269
CseI GACGC 2 cut(s) 58, 366
CviAII CATG 3 cut(s) 14, 308, 494
DdeI CTNAG 4 cut(s) 170, 183, 239, 411
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 167, 312, 402
DpnII GATC 3 cut(s) 165, 310, 400
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 2 cut(s) 329, 471
Eco24I GRGCYC 3 cut(s) 114, 331, 473
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 2 cut(s) 329, 471
Eco57I CTGAAG 1 cut(s) 445
Eco81I CCTNAGG 1 cut(s) 183
EcoICRI GAGCTC 2 cut(s) 329, 471
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoT38I GRGCYC 3 cut(s) 114, 331, 473
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 3 cut(s) 17, 311, 497
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 13, 307, 493
Fnu4HI GCNGC 2 cut(s) 42, 281
FokI GGATG 2 cut(s) 19, 336
FriOI GRGCYC 3 cut(s) 114, 331, 473
Fsp4HI GCNGC 2 cut(s) 42, 281
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 268
GluI GCNGC 2 cut(s) 42, 281
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 227, 348
HgaI GACGC 2 cut(s) 58, 366
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 17, 311, 497
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 133, 212
Hpy188I TCNGA 3 cut(s) 106, 242, 468
Hpy188III TCNNGA 2 cut(s) 14, 73
Hpy8I GTNNAC 2 cut(s) 133, 212
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 2 cut(s) 205, 506
HpyCH4V TGCA 6 cut(s) 41, 48, 81, 89, 261, 283
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 422
HpyF3I CTNAG 4 cut(s) 170, 183, 239, 411
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 17, 311, 497
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 165, 310, 400
LmnI GCTCC 2 cut(s) 187, 298
LpnPI CCDG 7 cut(s) 49, 91, 195, 261, 269, 411, 447
Lsp1109I GCAGC 2 cut(s) 53, 267
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 324
MalI GATC 3 cut(s) 167, 312, 402
MboI GATC 3 cut(s) 165, 310, 400
MboII GAAGA 5 cut(s) 70, 351, 363, 372, 422
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 3 cut(s) 114, 331, 473
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 1 cut(s) 479
MluNI TGGCCA 1 cut(s) 348
Mly113I GGCGCC 1 cut(s) 267
MnlI CCTC 9 cut(s) 30, 54, 124, 178, 190, 217, 223, 391, 406
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 1 cut(s) 450
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 348
MvnI CGCG 2 cut(s) 218, 338
MwoI GCNNNNNNNGC 5 cut(s) 159, 187, 224, 335, 422
NarI GGCGCC 1 cut(s) 267
NdeII GATC 3 cut(s) 165, 310, 400
NlaIII CATG 3 cut(s) 17, 311, 497
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 2 cut(s) 214, 253
PagI TCATGA 1 cut(s) 13
PkrI GCNGC 2 cut(s) 43, 282
PluTI GGCGCC 1 cut(s) 270
Psp124BI GAGCTC 2 cut(s) 331, 473
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 2 cut(s) 331, 473
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 2 cut(s) 42, 281
Sau3AI GATC 3 cut(s) 165, 310, 400
SduI GDGCHC 3 cut(s) 114, 331, 473
SetI ASST 9 cut(s) 32, 46, 80, 277, 303, 331, 408, 473, 518
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 281
SfoI GGCGCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 1 cut(s) 479
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 2 cut(s) 331, 473
TaaI ACNGT 2 cut(s) 205, 506
TaqI TCGA 1 cut(s) 116
TasI AATT 1 cut(s) 479
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 41, 280
TspDTI ATGAA 2 cut(s) 17, 351
TspRI CASTG 1 cut(s) 511
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 479
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.