AT3G11397

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011985
Physical Location & Seq
Forward (+)
3576017 .. 3578082
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11397.1

Sequence Viewer

Length: 630 bp
ATGGATTGGGACAGCGTTGCTGCTGAGGATGTGATTGAGGCGTTAAGAGAGGTTGAATGGTCGGCGAGTCCTCGTTCCTTGGCCGAGTTCTTCTCCAGATTCGCGTTTCCTCGCTCTTTCTCTAAATGGATGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTACTTCATCCTCTTCGTTTTCGTTCTGGGTCTTGCACTTATCACTCGACCTCTGGCAATTCTTGGTGCTGCTCTTACAGCTTTAAGCTTAGCTTTCCTAAACGACAGTTTTGCAGCTACTTTTAATGAGAAGATGATCCGGACCATTAGGCATTTCTCGCCACATTTAGCTGCAAAGATGAGGCCTCCCCACATGCCTGTCATTCGTGGGCGATCTGCAACTAGAAAGACAGTCTACATTTGTGGCCAACCACGTTTGGTATTCGTCTTACTTGGCTTAACCGCCAGTTTTGTCCTGTGGTTTACTTCATGTGGTTTGTTATGGGTCCTCTATGCACTTACCACTGCCCTTCTCATGATACTTCTTCATGCAAGCCTGAGAACTCCAAACCTCAAGGCCCGCTTGAACACATTCCGTGAAGAATTCAGGGCTGTCTGGCGTAACTACAGCGAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

209

Amino Acids

24.1

Weight (kDa)

10.19

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 20 - 192 1.6e-33 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11397 AT5G02040 AT5G02040 AT5G05987
fragaria_vesca FvH4_6g12950
malus_domestica MD04G1136600.v1.1 MD12G1150900.v1.1
prunus_persica Prupe.6G262800_v2.0.a1 Prupe.6G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465061
rosa_laevigata RLG00000024659
rosa_multiflora Rmu_sc0004362.1_g000018
rosa_roxburghii Rroxscaffold_6G00415290
rosa_rugosa Rorug03G0075000
rosa_samantha Rh3BG138500 Rh3CG140900 Rh3CG149200 Rh3DG140000
rosa_wichuraiana Rw3G011330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 104
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 2 cut(s) 453, 571
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 2 cut(s) 81, 415
AcsI RAATTY 1 cut(s) 593
AgsI TTSAA 2 cut(s) 56, 577
AluBI AGCT 5 cut(s) 251, 258, 263, 287, 341
AluI AGCT 5 cut(s) 251, 258, 263, 287, 341
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 301
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 4 cut(s) 81, 353, 415, 567
ApeKI GCWGC 4 cut(s) 20, 239, 284, 341
ApoI RAATTY 1 cut(s) 593
Asp700I GAANNNNTTC 2 cut(s) 173, 581
AspS9I GGNCC 3 cut(s) 312, 496, 568
AvaII GGWCC 2 cut(s) 312, 496
BalI TGGCCA 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 7, 226, 296, 328
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 2 cut(s) 160, 616
BisI GCNGC 4 cut(s) 21, 240, 285, 342
BlpI GCTNAGC 1 cut(s) 259
BlsI GCNGC 4 cut(s) 22, 241, 286, 343
Bme18I GGWCC 2 cut(s) 312, 496
BmgT120I GGNCC 3 cut(s) 312, 496, 568
BmiI GGNNCC 1 cut(s) 497
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 3 cut(s) 34, 135, 177
BseMII CTCAG 2 cut(s) 15, 539
BseNI ACTGG 1 cut(s) 456
BseXI GCAGC 4 cut(s) 7, 226, 296, 328
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 4 cut(s) 83, 355, 417, 569
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 143
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 4 cut(s) 83, 355, 417, 569
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 306, 383
Bsp1720I GCTNAGC 1 cut(s) 259
BspACI CCGC 2 cut(s) 453, 571
BspANI GGCC 4 cut(s) 83, 355, 417, 569
BspCNI CTCAG 2 cut(s) 16, 540
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 497
BspPI GGATC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 306, 383
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 278, 403
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 544, 571
BstDEI CTNAG 3 cut(s) 24, 259, 548
BstF5I GGATG 3 cut(s) 34, 135, 177
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 2 cut(s) 309, 386
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 306, 383
BstMWI GCNNNNNNNGC 2 cut(s) 248, 328
BstNSI RCATGY 1 cut(s) 367
BstSFI CTRYAG 2 cut(s) 160, 616
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 4 cut(s) 7, 226, 296, 328
BsuRI GGCC 4 cut(s) 83, 355, 417, 569
BtsCI GGATG 3 cut(s) 34, 135, 177
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 544, 571
CciI TCATGA 1 cut(s) 525
Cfr13I GGNCC 3 cut(s) 312, 496, 568
CviAII CATG 4 cut(s) 364, 480, 526, 539
DdeI CTNAG 3 cut(s) 24, 259, 548
DpnI GATC 2 cut(s) 308, 385
DpnII GATC 2 cut(s) 306, 383
EaeI YGGCCR 2 cut(s) 81, 415
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 312, 496
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 4 cut(s) 367, 483, 529, 542
FaiI YATR 7 cut(s) 162, 365, 481, 493, 504, 527, 540
FalI AAGNNNNNCTT 4 cut(s) 247, 279, 557, 589
FaqI GGGAC 1 cut(s) 23
FatI CATG 4 cut(s) 363, 479, 525, 538
FauI CCCGC 1 cut(s) 578
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 21, 240, 285, 342
FokI GGATG 3 cut(s) 41, 142, 164
Fsp4HI GCNGC 4 cut(s) 21, 240, 285, 342
FspBI CTAG 1 cut(s) 393
GluI GCNGC 4 cut(s) 21, 240, 285, 342
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 4 cut(s) 83, 355, 417, 569
HapII CCGG 1 cut(s) 310
Hin1II CATG 4 cut(s) 367, 483, 529, 542
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 2 cut(s) 67, 99
HpaII CCGG 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 406, 474
Hpy188III TCNNGA 3 cut(s) 96, 310, 526
Hpy8I GTNNAC 2 cut(s) 406, 474
HpyAV CCTTC 1 cut(s) 530
HpyCH4III ACNGT 2 cut(s) 278, 403
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 7 cut(s) 147, 206, 284, 344, 389, 506, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 328
HpyF3I CTNAG 3 cut(s) 24, 259, 548
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 4 cut(s) 367, 483, 529, 542
Kpn2I TCCGGA 1 cut(s) 309
Kzo9I GATC 2 cut(s) 306, 383
Lsp1109I GCAGC 4 cut(s) 7, 226, 296, 328
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 611
MalI GATC 2 cut(s) 308, 385
MboI GATC 2 cut(s) 306, 383
MboII GAAGA 5 cut(s) 82, 175, 313, 527, 602
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 3 cut(s) 169, 228, 593
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 1 cut(s) 76
Mox20I TGGCCA 1 cut(s) 417
MroI TCCGGA 1 cut(s) 309
MroXI GAANNNNTTC 2 cut(s) 173, 581
MscI TGGCCA 1 cut(s) 417
MseI TTAA 5 cut(s) 44, 254, 294, 449, 628
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 248, 328
NdeII GATC 2 cut(s) 306, 383
NlaIII CATG 4 cut(s) 367, 483, 529, 542
NlaIV GGNNCC 1 cut(s) 497
NmeAIII GCCGAG 1 cut(s) 109
NspI RCATGY 1 cut(s) 367
PagI TCATGA 1 cut(s) 525
PceI AGGCCT 1 cut(s) 355
PdmI GAANNNNTTC 2 cut(s) 173, 581
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 4 cut(s) 22, 241, 286, 343
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PpuMI RGGWCCY 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 3 cut(s) 312, 496, 568
PspPPI RGGWCCY 1 cut(s) 496
SaqAI TTAA 5 cut(s) 44, 254, 294, 449, 628
SatI GCNGC 4 cut(s) 21, 240, 285, 342
Sau3AI GATC 2 cut(s) 306, 383
Sau96I GGNCC 3 cut(s) 312, 496, 568
SchI GAGTC 1 cut(s) 76
SetI ASST 9 cut(s) 54, 223, 253, 260, 265, 289, 343, 427, 564
SfcI CTRYAG 2 cut(s) 160, 616
SinI GGWCC 2 cut(s) 312, 496
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 3 cut(s) 169, 228, 593
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 2 cut(s) 453, 571
SspMI CTAG 1 cut(s) 393
StuI AGGCCT 1 cut(s) 355
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 278, 403
TaiI ACGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 169, 228, 593
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 5 cut(s) 44, 254, 294, 449, 628
Tru9I TTAA 5 cut(s) 44, 254, 294, 449, 628
TscAI CASTG 1 cut(s) 520
TseI GCWGC 4 cut(s) 20, 239, 284, 341
TspDTI ATGAA 3 cut(s) 166, 468, 527
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 312, 496
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 2 cut(s) 173, 581
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.