AT5G05987

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011985
Physical Location & Seq
Forward (+)
1804697 .. 1806850
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05987.1

Sequence Viewer

Length: 630 bp
ATGGATTGGGACAACGTAGCAGCTGAGGATGTGATTGAGGCGCTTAGAGAAGTTGAATGGTCGACGCCTCCTCGTTCGTTTGGCGAGTTCTTCTCTAGATTCGCGTTCCCTCGCTCTTTCTCTAAATGGAAGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTACTTTATCTTGGTGATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGGCTCTTGTGGGTGCTGCTCTAACAGCTTTAAGTATAGCTTTCCTTAACGACAGTTTTGCAGCTAGTTTTAATGAGAAGTTTATAAGAACGATTAGGCATTTCTCCCCACACATGGCTGCAAAAATGAGACCTCCCCACATGCCTGTCATCCGTGGAAGATCGACAGCAAGAAAGACAGTATACGTTTGTGGGAAACCGCGATGGGTATTCGTTATTACTTTCCTTACAGCCAGTCTTGTCATGTGGTTTTCTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACTTCTCACTTCCCTTGCTGTGATCATTGTTCATGCAAGCATAAGAACCCCAAATCTCAAGGCACGCTTAAACACATTCCGTGAAGAATTCCGGGCTGTCTGGCGTAACTACAGTGAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

209

Amino Acids

24.19

Weight (kDa)

10.28

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 20 - 192 4.6e-34 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11397 AT5G02040 AT5G02040 AT5G05987
fragaria_vesca FvH4_6g12950
malus_domestica MD04G1136600.v1.1 MD12G1150900.v1.1
prunus_persica Prupe.6G262800_v2.0.a1 Prupe.6G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465061
rosa_laevigata RLG00000024659
rosa_multiflora Rmu_sc0004362.1_g000018
rosa_roxburghii Rroxscaffold_6G00415290
rosa_rugosa Rorug03G0075000
rosa_samantha Rh3BG138500 Rh3CG140900 Rh3CG149200 Rh3DG140000
rosa_wichuraiana Rw3G011330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AccI GTMKAC 2 cut(s) 62, 405
AccII CGCG 2 cut(s) 104, 424
AciI CCGC 2 cut(s) 422, 483
AcsI RAATTY 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 4 cut(s) 23, 251, 263, 287
AluI AGCT 4 cut(s) 23, 251, 263, 287
Alw26I GTCTC 3 cut(s) 143, 211, 346
ApeKI GCWGC 4 cut(s) 20, 239, 284, 341
ApoI RAATTY 1 cut(s) 593
AspLEI GCGC 2 cut(s) 43, 208
AspS9I GGNCC 1 cut(s) 496
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 496
BbvCI CCTCAGC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 32, 226, 296, 328
BccI CCATC 1 cut(s) 420
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BclI TGATCA 1 cut(s) 528
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 3 cut(s) 143, 211, 346
BfaI CTAG 2 cut(s) 96, 288
BfmI CTRYAG 2 cut(s) 160, 616
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 4 cut(s) 21, 240, 285, 342
BlsI GCNGC 4 cut(s) 22, 241, 286, 343
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 496
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 1 cut(s) 599
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 548
BpuMI CCSGG 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 211, 346
BsaJI CCNNGG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 34, 372
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 32, 226, 296, 328
Bsh1236I CGCG 2 cut(s) 104, 424
BsiSI CCGG 1 cut(s) 598
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 3 cut(s) 143, 211, 346
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 23
Bso31I GGTCTC 2 cut(s) 211, 346
Bsp143I GATC 2 cut(s) 383, 528
BspACI CCGC 2 cut(s) 422, 483
BspCNI CTCAG 1 cut(s) 16
BspFNI CGCG 2 cut(s) 104, 424
BspLI GGNNCC 1 cut(s) 497
BspQI GCTCTTC 1 cut(s) 125
BspTNI GGTCTC 2 cut(s) 211, 346
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 2 cut(s) 383, 528
BssNAI GTATAC 1 cut(s) 406
BssNI GRCGYC 1 cut(s) 65
Bst1107I GTATAC 1 cut(s) 406
Bst4CI ACNGT 3 cut(s) 278, 403, 620
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 544, 571
BstDEI CTNAG 2 cut(s) 24, 44
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 2 cut(s) 34, 372
BstFNI CGCG 2 cut(s) 104, 424
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 2 cut(s) 43, 208
BstKTI GATC 2 cut(s) 386, 531
BstMAI GTCTC 3 cut(s) 143, 211, 346
BstMBI GATC 2 cut(s) 383, 528
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 2 cut(s) 160, 616
BstUI CGCG 2 cut(s) 104, 424
BstV1I GCAGC 4 cut(s) 32, 226, 296, 328
BstZ17I GTATAC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 439
BtsCI GGATG 2 cut(s) 34, 372
BtsIMutI CAGTG 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 544, 571
CfoI GCGC 2 cut(s) 43, 208
Cfr13I GGNCC 1 cut(s) 496
CseI GACGC 1 cut(s) 73
CviAII CATG 4 cut(s) 337, 364, 466, 539
CviJI RGCY 9 cut(s) 23, 135, 227, 251, 263, 287, 341, 455, 602
CviKI_1 RGCY 9 cut(s) 23, 135, 227, 251, 263, 287, 341, 455, 602
DdeI CTNAG 2 cut(s) 24, 44
DpnI GATC 2 cut(s) 385, 530
DpnII GATC 2 cut(s) 383, 528
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco31I GGTCTC 2 cut(s) 211, 346
Eco47I GGWCC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 4 cut(s) 340, 367, 469, 542
FalI AAGNNNNNCTT 4 cut(s) 247, 279, 557, 589
FaqI GGGAC 1 cut(s) 23
FatI CATG 4 cut(s) 336, 363, 465, 538
FbaI TGATCA 1 cut(s) 528
FblI GTMKAC 2 cut(s) 62, 405
Fnu4HI GCNGC 4 cut(s) 21, 240, 285, 342
FokI GGATG 2 cut(s) 41, 359
Fsp4HI GCNGC 4 cut(s) 21, 240, 285, 342
FspBI CTAG 2 cut(s) 96, 288
GlaI GCGC 2 cut(s) 42, 207
GluI GCNGC 4 cut(s) 21, 240, 285, 342
HaeII RGCGCY 1 cut(s) 44
HapII CCGG 1 cut(s) 598
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 43, 208
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 4 cut(s) 340, 367, 469, 542
Hin6I GCGC 2 cut(s) 41, 206
HinP1I GCGC 2 cut(s) 41, 206
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 1 cut(s) 99
HpaII CCGG 1 cut(s) 598
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 63, 406, 623
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 3 cut(s) 63, 406, 623
Hpy99I CGWCG 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 278, 403, 620
HpyCH4IV ACGT 2 cut(s) 15, 408
HpyCH4V TGCA 5 cut(s) 147, 284, 344, 506, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 2 cut(s) 24, 44
HpySE526I ACGT 2 cut(s) 15, 408
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 4 cut(s) 340, 367, 469, 542
HspAI GCGC 2 cut(s) 41, 206
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 2 cut(s) 383, 528
LguI GCTCTTC 1 cut(s) 125
LpnPI CCDG 7 cut(s) 182, 209, 381, 469, 493, 592, 611
Lsp1109I GCAGC 4 cut(s) 32, 226, 296, 328
MaeI CTAG 2 cut(s) 96, 288
MaeII ACGT 2 cut(s) 15, 408
MaeIII GTNAC 2 cut(s) 211, 611
MalI GATC 2 cut(s) 385, 530
MboI GATC 2 cut(s) 383, 528
MboII GAAGA 5 cut(s) 82, 142, 393, 468, 602
MluCI AATT 2 cut(s) 169, 593
MnlI CCTC 8 cut(s) 19, 31, 78, 81, 120, 231, 366, 509
MseI TTAA 5 cut(s) 254, 270, 294, 575, 628
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 1 cut(s) 599
MvnI CGCG 2 cut(s) 104, 424
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 599
NdeII GATC 2 cut(s) 383, 528
NlaIII CATG 4 cut(s) 340, 367, 469, 542
NlaIV GGNNCC 1 cut(s) 497
NspI RCATGY 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 4 cut(s) 22, 241, 286, 343
PpuMI RGGWCCY 1 cut(s) 496
PsiI TTATAA 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 1 cut(s) 496
PspPPI RGGWCCY 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 23
SalI GTCGAC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 5 cut(s) 254, 270, 294, 575, 628
SatI GCNGC 4 cut(s) 21, 240, 285, 342
Sau3AI GATC 2 cut(s) 383, 528
Sau96I GGNCC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 599
SetI ASST 8 cut(s) 18, 25, 223, 253, 265, 289, 358, 411
SfcI CTRYAG 2 cut(s) 160, 616
SinI GGWCC 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 2 cut(s) 169, 593
SsiI CCGC 2 cut(s) 422, 483
SspMI CTAG 2 cut(s) 96, 288
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 278, 403, 620
TaiI ACGT 2 cut(s) 18, 411
TaqI TCGA 2 cut(s) 62, 386
TasI AATT 2 cut(s) 169, 593
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 5 cut(s) 254, 270, 294, 575, 628
Tru9I TTAA 5 cut(s) 254, 270, 294, 575, 628
TscAI CASTG 1 cut(s) 625
TseI GCWGC 4 cut(s) 20, 239, 284, 341
TspDTI ATGAA 1 cut(s) 527
TspGWI ACGGA 2 cut(s) 365, 575
TspRI CASTG 1 cut(s) 625
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 1 cut(s) 593
XbaI TCTAGA 1 cut(s) 95
XceI RCATGY 1 cut(s) 367
XmiI GTMKAC 2 cut(s) 62, 405
XspI CTAG 2 cut(s) 96, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.