Rh3BG138500

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011985
Physical Location & Seq
Forward (+)
11764517 .. 11767913
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG138500.1

Sequence Viewer

Length: 591 bp
ATGTTTGATGCCGATTATGATCATGATTCCAAGATTCAAATATTTGAGCTGATTTTATCGATGAATTTGTATCTGTTTCGAGTGTTGGATTTGATGAAAACTGTTTATGCTTTTTGCAGCTACAGAACCAACTACTTCCTTTTGATTGTTACGATTCTCGGCTTGGCTTTTCTAACGAGGCCTCTTGCAATTGTGGCTGCCTTTCTGACGGCACTCAGCATTGCTTTTCTGAATGACAGCTTTGCAGGTACTTTTAGTGAGAAAGTTACAAGATCTGTGAGGCAATTCTCTCCACATTTAGCTGCAAAGATGAGACCTCCTCTTACGCCTGTAATTCGTGGACGTCCTTCAGCCAAGAGAGCAATATTCATATGTGGTCGGCCTCGTTGGGTGTTTGTCTTGATATTCTCTTCTGTGAGTTTCATCCTGTGGCTTGTTTCCTGTGGTCTCTTAATTGTCTCATGGGCACTCTCCTTCGGACTTCTTGCCACTTTACTGCATGCAAGCTTCAGGACACCCAACTTGAAAGCACGTCTGAACACATTCCGCGAGGAATTTCGTCAAGTTTGGCGCAACTATAGTGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 PRA1

Protein Analysis

196

Amino Acids

22.53

Weight (kDa)

10.14

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 40 - 179 6e-20 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11397 AT5G02040 AT5G02040 AT5G05987
fragaria_vesca FvH4_6g12950
malus_domestica MD04G1136600.v1.1 MD12G1150900.v1.1
prunus_persica Prupe.6G262800_v2.0.a1 Prupe.6G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465061
rosa_laevigata RLG00000024659
rosa_multiflora Rmu_sc0004362.1_g000018
rosa_roxburghii Rroxscaffold_6G00415290
rosa_rugosa Rorug03G0075000
rosa_samantha Rh3BG138500 Rh3CG140900 Rh3CG149200 Rh3DG140000
rosa_wichuraiana Rw3G011330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 236
AccII CGCG 1 cut(s) 549
AciI CCGC 1 cut(s) 547
AcsI RAATTY 2 cut(s) 64, 554
AcuI CTGAAG 2 cut(s) 333, 493
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 2 cut(s) 38, 526
AjiI CACGTC 1 cut(s) 533
AluBI AGCT 6 cut(s) 49, 120, 240, 302, 507, 586
AluI AGCT 6 cut(s) 49, 120, 240, 302, 507, 586
Alw26I GTCTC 3 cut(s) 307, 452, 463
AoxI GGCC 2 cut(s) 179, 380
ApeKI GCWGC 3 cut(s) 117, 197, 302
ApoI RAATTY 2 cut(s) 64, 554
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 1 cut(s) 573
BaeGI GKGCMC 1 cut(s) 469
BbvI GCAGC 3 cut(s) 129, 184, 289
BceAI ACGGC 1 cut(s) 225
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 3 cut(s) 307, 452, 463
BfmI CTRYAG 2 cut(s) 121, 577
BfuAI ACCTGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 272
BisI GCNGC 3 cut(s) 118, 198, 303
BlsI GCNGC 3 cut(s) 119, 199, 304
BmgBI CACGTC 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 304, 336
Bsa29I ATCGAT 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 343
BsaI GGTCTC 2 cut(s) 307, 452
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 59
BseGI GGATG 1 cut(s) 423
BseJI GATNNNNATC 1 cut(s) 18
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 3 cut(s) 129, 184, 289
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 2 cut(s) 181, 382
BshVI ATCGAT 1 cut(s) 59
BsmAI GTCTC 3 cut(s) 307, 452, 463
BsnI GGCC 2 cut(s) 181, 382
Bso31I GGTCTC 2 cut(s) 307, 452
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 2 cut(s) 19, 272
BspACI CCGC 1 cut(s) 547
BspANI GGCC 2 cut(s) 181, 382
BspCNI CTCAG 1 cut(s) 228
BspDI ATCGAT 1 cut(s) 59
BspFNI CGCG 1 cut(s) 549
BspHI TCATGA 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 236
BspTNI GGTCTC 2 cut(s) 307, 452
BsrDI GCAATG 1 cut(s) 219
BssMI GATC 2 cut(s) 19, 272
BssNI GRCGYC 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 415
BstACI GRCGYC 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 501, 505
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 2 cut(s) 22, 275
BstMAI GTCTC 3 cut(s) 307, 452, 463
BstMBI GATC 2 cut(s) 19, 272
BstMWI GCNNNNNNNGC 2 cut(s) 194, 359
BstNSI RCATGY 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 121, 577
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 3 cut(s) 129, 184, 289
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 59
BsuRI GGCC 2 cut(s) 181, 382
BsuTUI ATCGAT 1 cut(s) 59
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 1 cut(s) 423
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 501, 505
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 573
ClaI ATCGAT 1 cut(s) 59
Csp6I GTAC 1 cut(s) 249
CviAII CATG 3 cut(s) 23, 462, 500
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 21, 274
DpnII GATC 2 cut(s) 19, 272
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 181
Eco31I GGTCTC 2 cut(s) 307, 452
Eco57I CTGAAG 2 cut(s) 333, 493
FaeI CATG 3 cut(s) 26, 465, 503
FaiI YATR 8 cut(s) 18, 24, 108, 371, 373, 463, 501, 579
FatI CATG 3 cut(s) 22, 461, 499
FauNDI CATATG 1 cut(s) 371
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 118, 198, 303
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 3 cut(s) 118, 198, 303
GlaI GCGC 1 cut(s) 572
GluI GCNGC 3 cut(s) 118, 198, 303
HaeIII GGCC 2 cut(s) 181, 382
HhaI GCGC 1 cut(s) 573
Hin1I GRCGYC 1 cut(s) 343
Hin1II CATG 3 cut(s) 26, 465, 503
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 3 cut(s) 26, 34, 154
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 4 cut(s) 207, 231, 479, 537
Hpy188III TCNNGA 3 cut(s) 23, 400, 511
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 357, 484
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 343, 532
HpyCH4V TGCA 6 cut(s) 117, 188, 245, 305, 499, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 359
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 2 cut(s) 343, 532
Hsp92I GRCGYC 1 cut(s) 343
Hsp92II CATG 3 cut(s) 26, 465, 503
HspAI GCGC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 19, 272
LpnPI CCDG 5 cut(s) 231, 342, 440, 454, 496
Lsp1109I GCAGC 3 cut(s) 129, 184, 289
MaeII ACGT 2 cut(s) 343, 532
MaeIII GTNAC 2 cut(s) 148, 265
MalI GATC 2 cut(s) 21, 274
MboI GATC 2 cut(s) 19, 272
MboII GAAGA 1 cut(s) 402
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 6 cut(s) 64, 189, 284, 333, 453, 554
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 7 cut(s) 171, 192, 273, 327, 330, 393, 544
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 1 cut(s) 452
MunI CAATTG 1 cut(s) 189
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 194, 359
NdeI CATATG 1 cut(s) 371
NdeII GATC 2 cut(s) 19, 272
NlaIII CATG 3 cut(s) 26, 465, 503
NmeAIII GCCGAG 1 cut(s) 138
NspI RCATGY 1 cut(s) 503
PaeI GCATGC 1 cut(s) 503
PagI TCATGA 1 cut(s) 22
PceI AGGCCT 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 26, 34, 154
PkrI GCNGC 3 cut(s) 119, 199, 304
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 3 cut(s) 118, 198, 303
Sau3AI GATC 2 cut(s) 19, 272
SduI GDGCHC 1 cut(s) 469
SfcI CTRYAG 2 cut(s) 121, 577
SphI GCATGC 1 cut(s) 503
Sse9I AATT 6 cut(s) 64, 189, 284, 333, 453, 554
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 1 cut(s) 547
SspI AATATT 2 cut(s) 42, 366
StuI AGGCCT 1 cut(s) 181
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 346, 535
TaqI TCGA 2 cut(s) 59, 79
TasI AATT 6 cut(s) 64, 189, 284, 333, 453, 554
TfiI GAWTC 3 cut(s) 26, 34, 154
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TseI GCWGC 3 cut(s) 117, 197, 302
TspDTI ATGAA 4 cut(s) 77, 110, 358, 412
XapI RAATTY 2 cut(s) 64, 554
XceI RCATGY 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 542
ZraI GACGTC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.