Prupe.6G262800_v2.0.a1

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011985
Physical Location & Seq
Reverse (-)
25266436 .. 25269356
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G262800.1

Sequence Viewer

Length: 630 bp
ATGGATTGGGGCAACGTTACGGCCGAGGATCTGATCGACGCACTCCGCGAAGTGGATTGGTCTTCTCCGCCTCGCCCTCTCTCTGAATTCTTCTCCAAGTTCACCGTCCCCAGATCCTCCTCCAAATGGAACAGCCGCCTCAAATGCAATCTCTACTACTACAGGACCAACTACTTCCTTTTGATCATTTTCGTTCTTGGCTTGGCTTTTCTTCGGAGGCCGCTTGCTATTGTAGCTGCTCTTCTTACGGCACTCAGCATTGCGATTCTTAATGACAGCTTTGCAGGTACTTTTAGTGAGAAAGTATCGAGAACTGTGAGACAATTCTCTCCACATTTGGCTGCAAAGATGAGACCTCCTCTTACGCCTGTAATTCGTGGACGTCCATCAGCTAAAAGAGCAATATTCATATGTGGCCGGCCTCGCTGGGTGTTTGTCTTCTTATTCTCTTCTGTGAGTTTCTTTCTATGGTTTGTTTCCTGTGGTCTTTTAACTGTACTGTGGGCACTCGCCTTTGGACTGCTTGCCACTCTGTTGCATGCAAGCTTCAGAACACCTAACTTGAAAGCACGCCTGAACACTTTCCGTGAGGAATTTCGTGCAGTGTGGCGCAACTATAGTGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 PRA1

Protein Analysis

210

Amino Acids

24.04

Weight (kDa)

10.72

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11397 AT5G02040 AT5G02040 AT5G05987
fragaria_vesca FvH4_6g12950
malus_domestica MD04G1136600.v1.1 MD12G1150900.v1.1
prunus_persica Prupe.6G262800_v2.0.a1 Prupe.6G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465061
rosa_laevigata RLG00000024659
rosa_multiflora Rmu_sc0004362.1_g000018
rosa_roxburghii Rroxscaffold_6G00415290
rosa_rugosa Rorug03G0075000
rosa_samantha Rh3BG138500 Rh3CG140900 Rh3CG149200 Rh3DG140000
rosa_wichuraiana Rw3G011330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 275
AccII CGCG 1 cut(s) 48
AciI CCGC 4 cut(s) 46, 68, 136, 221
AclI AACGTT 1 cut(s) 15
AclWI GGATC 2 cut(s) 36, 108
AcoI YGGCCR 2 cut(s) 21, 415
AcsI RAATTY 2 cut(s) 86, 593
AcuI CTGAAG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 2 cut(s) 289, 498
AfiI CCNNNNNNNGG 2 cut(s) 52, 126
AgsI TTSAA 1 cut(s) 565
AluBI AGCT 5 cut(s) 236, 279, 392, 546, 625
AluI AGCT 5 cut(s) 236, 279, 392, 546, 625
Alw26I GTCTC 2 cut(s) 313, 346
AlwI GGATC 2 cut(s) 36, 108
AoxI GGCC 4 cut(s) 21, 218, 415, 419
ApeKI GCWGC 2 cut(s) 236, 341
ApoI RAATTY 2 cut(s) 86, 593
Asp700I GAANNNNTTC 1 cut(s) 581
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 508
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbsI GAAGAC 2 cut(s) 54, 430
BbvI GCAGC 2 cut(s) 223, 328
BccI CCATC 1 cut(s) 394
BceAI ACGGC 2 cut(s) 36, 264
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 313, 346
BfmI CTRYAG 3 cut(s) 160, 616, 626
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 4 cut(s) 136, 221, 237, 342
BlsI GCNGC 4 cut(s) 137, 222, 238, 343
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 165
BpiI GAAGAC 2 cut(s) 54, 430
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 126
Bse118I RCCGGY 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 52, 126
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 268
BseRI GAGGAG 2 cut(s) 109, 348
BseSI GKGCMC 1 cut(s) 508
BseX3I CGGCCG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 223, 328
BseYI CCCAGC 1 cut(s) 426
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 4 cut(s) 23, 220, 417, 421
BsiEI CGRYCG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 52, 126
BsmAI GTCTC 2 cut(s) 313, 346
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 4 cut(s) 23, 220, 417, 421
Bso31I GGTCTC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 4 cut(s) 28, 33, 113, 183
BspACI CCGC 4 cut(s) 46, 68, 136, 221
BspANI GGCC 4 cut(s) 23, 220, 417, 421
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 36, 108
BspQI GCTCTTC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 417
BssAI RCCGGY 1 cut(s) 417
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 28, 33, 113, 183
BssNI GRCGYC 1 cut(s) 382
Bst4CI ACNGT 4 cut(s) 106, 316, 496, 501
Bst6I CTCTTC 2 cut(s) 246, 454
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 6 cut(s) 225, 419, 525, 540, 544, 571
BstDEI CTNAG 1 cut(s) 254
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 4 cut(s) 31, 36, 116, 186
BstMAI GTCTC 2 cut(s) 313, 346
BstMBI GATC 4 cut(s) 28, 33, 113, 183
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 144, 233, 398, 423
BstNSI RCATGY 1 cut(s) 542
BstSFI CTRYAG 3 cut(s) 160, 616, 626
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 223, 328
BstV2I GAAGAC 2 cut(s) 54, 430
BstX2I RGATCY 2 cut(s) 28, 113
BstYI RGATCY 2 cut(s) 28, 113
BstZI CGGCCG 1 cut(s) 21
BsuRI GGCC 4 cut(s) 23, 220, 417, 421
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 1 cut(s) 609
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 6 cut(s) 225, 419, 525, 540, 544, 571
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 165
CseI GACGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 288, 497
CviAII CATG 1 cut(s) 539
CviQI GTAC 2 cut(s) 288, 497
DdeI CTNAG 1 cut(s) 254
DpnI GATC 4 cut(s) 30, 35, 115, 185
DpnII GATC 4 cut(s) 28, 33, 113, 183
EaeI YGGCCR 2 cut(s) 21, 415
EagI CGGCCG 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 246, 454
EarI CTCTTC 2 cut(s) 246, 454
EciI GGCGGA 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 532
EcoRI GAATTC 1 cut(s) 86
FaeI CATG 1 cut(s) 542
FaiI YATR 5 cut(s) 410, 412, 469, 540, 618
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 538
FauNDI CATATG 1 cut(s) 410
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 136, 221, 237, 342
FseI GGCCGGCC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 136, 221, 237, 342
GlaI GCGC 1 cut(s) 611
GluI GCNGC 4 cut(s) 136, 221, 237, 342
GsaI CCCAGC 1 cut(s) 430
HaeIII GGCC 4 cut(s) 23, 220, 417, 421
HapII CCGG 1 cut(s) 418
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 612
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 1 cut(s) 542
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 1 cut(s) 265
HpaII CCGG 1 cut(s) 418
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 102, 380
Hpy188I TCNGA 4 cut(s) 33, 85, 216, 551
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 2 cut(s) 102, 380
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 4 cut(s) 106, 316, 496, 501
HpyCH4IV ACGT 2 cut(s) 15, 382
HpyCH4V TGCA 6 cut(s) 147, 284, 344, 538, 542, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 233, 398, 423
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 2 cut(s) 15, 382
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 1 cut(s) 542
HspAI GCGC 1 cut(s) 610
KroI GCCGGC 1 cut(s) 417
KroNI GCCGGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 4 cut(s) 28, 33, 113, 183
LguI GCTCTTC 1 cut(s) 246
LpnPI CCDG 8 cut(s) 124, 148, 270, 381, 412, 431, 493, 587
Lsp1109I GCAGC 2 cut(s) 223, 328
MaeII ACGT 2 cut(s) 15, 382
MaeIII GTNAC 1 cut(s) 16
MalI GATC 4 cut(s) 30, 35, 115, 185
MboI GATC 4 cut(s) 28, 33, 113, 183
MboII GAAGA 6 cut(s) 54, 82, 203, 233, 430, 441
MflI RGATCY 2 cut(s) 28, 113
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 4 cut(s) 86, 323, 372, 593
MroNI GCCGGC 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 581
MseI TTAA 2 cut(s) 270, 491
MspI CCGG 1 cut(s) 418
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 144, 233, 398, 423
NaeI GCCGGC 1 cut(s) 419
NdeI CATATG 1 cut(s) 410
NdeII GATC 4 cut(s) 28, 33, 113, 183
NgoMIV GCCGGC 1 cut(s) 417
NlaIII CATG 1 cut(s) 542
NmeAIII GCCGAG 1 cut(s) 49
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 45
PdiI GCCGGC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 4 cut(s) 137, 222, 238, 343
Psp1406I AACGTT 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 165
PsuI RGATCY 2 cut(s) 28, 113
RigI GGCCGGCC 1 cut(s) 421
RsaI GTAC 2 cut(s) 289, 498
RsaNI GTAC 2 cut(s) 288, 497
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 270, 491
SatI GCNGC 4 cut(s) 136, 221, 237, 342
Sau3AI GATC 4 cut(s) 28, 33, 113, 183
Sau96I GGNCC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 508
SfcI CTRYAG 3 cut(s) 160, 616, 626
SinI GGWCC 1 cut(s) 165
SphI GCATGC 1 cut(s) 542
Sse9I AATT 4 cut(s) 86, 323, 372, 593
SsiI CCGC 4 cut(s) 46, 68, 136, 221
SspI AATATT 1 cut(s) 405
TaaI ACNGT 4 cut(s) 106, 316, 496, 501
TaiI ACGT 2 cut(s) 18, 385
TaqI TCGA 2 cut(s) 36, 308
TasI AATT 4 cut(s) 86, 323, 372, 593
TatI WGTACW 1 cut(s) 496
TauI GCSGC 2 cut(s) 138, 223
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 2 cut(s) 270, 491
Tru9I TTAA 2 cut(s) 270, 491
TscAI CASTG 1 cut(s) 609
TseI GCWGC 2 cut(s) 236, 341
TspDTI ATGAA 1 cut(s) 397
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 1 cut(s) 609
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 2 cut(s) 86, 593
XceI RCATGY 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 581
ZraI GACGTC 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.