RLG00000024659

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011985
Physical Location & Seq
Reverse (-)
37959444 .. 37964256
4813 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024659

Sequence Viewer

Length: 1203 bp
ATGGATTGGGGCAACGTCACGGCGGAGGATCTGGTCGACGCTCTCCGCGAAGTGGACTGGTCGTCTCCGCCGCGTCCTTTCTCGGAATTCTTCTCCAGGTTCACCGTCCCCAGATCCTCTTCCAAATGGAACAGCCGCCTCAAATGCAATCTCTACTACTACAGAACCAACTACTTCCTTTTGATTGTTACGATTCTCGGCTTGGCTTTTCTAACGAGGCCTCTTGCGATTGTGGCTGCCTTTCTGACGGCACTCAGCATTGCTTTTCTGAATGACAGCTTTGCAGGTACTTTTAGTGAGAAAGTGACAAGATCTGTGAGGCAATTCTCTCCACATTTAGCTGCAAAGATGAGGCCTCCTCTTACGCCTGTAATTCGTGGACGTCCTTCTTCCAAGAGAGCAATATTCATATGTGGTCGGCCTCGTTGGGTGTTTGTCTTGATATTCTCTTCTGTGAGTTTCATCCTGTGGTTTGTTTCCTGTGGTCTCTTAATTGTCTCATGGGCACTCTCCTTTGGACTTCTTGCCACTTTACTGCATGCAAGCTTCAGGACACCCAACTTGAAAGCACGTCTGAACACATTCCGCGAGGAATTTCGTCAAGTTTGGCGCAACTATAGTGAGCTCAAAGTCTTTGCTTCTGTTAGGAATCGTGCTATTGATTGTGAACCTCATACAAGTTGTGATTTGGAGCTTGAGCTTCACTACAGCCGCTATGAAATAATCTTGGCTGGACTGGAATTCCTAGAGGCCCTCTGGCTCTCAAACAACAAAGCTGGAAGCATCAATCAGAAAAATAAAGTAGCAAACTCTCACAGTCTTCTCACTACTGCAACAACTGCTGCCAACATCACCTGTGCTCCTGATGATGATCCAAGGAAGCCGCATGGTGTTTGGGGAGGCGGTAGTGGTTATGGTCGTGGAGGGGCAAATTGCGGTGTAGGCTTTGGTCATTACATCTTCATCATCATCGATCATGGTGGGGGTGGAGCTGGTTTTGGCATTGGAGCCCTCCAATTTTGGCTCGGGGAGCGGGTTTTGGTGGTGGTGGGGGTGGAGGTGGAGGAGGAGGGGGTAGCGGTGCATGCTGAAAGGAAGTCATTTCCTTTTCTTCTTTCTTTTGGCAAACGAAAGCAAATCATTTCTTCTCGCCACATGGCCGCTAGTTATATCACACGAGATATTTCTGATGTAAGTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 PRA1

Protein Analysis

401

Amino Acids

44.66

Weight (kDa)

9.56

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 20 - 192 1.1e-35 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11397 AT5G02040 AT5G02040 AT5G05987
fragaria_vesca FvH4_6g12950
malus_domestica MD04G1136600.v1.1 MD12G1150900.v1.1
prunus_persica Prupe.6G262800_v2.0.a1 Prupe.6G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465061
rosa_laevigata RLG00000024659
rosa_multiflora Rmu_sc0004362.1_g000018
rosa_roxburghii Rroxscaffold_6G00415290
rosa_rugosa Rorug03G0075000
rosa_samantha Rh3BG138500 Rh3CG140900 Rh3CG149200 Rh3DG140000
rosa_wichuraiana Rw3G011330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 1033
AccI GTMKAC 1 cut(s) 36
AccII CGCG 3 cut(s) 48, 73, 588
AclWI GGATC 3 cut(s) 36, 108, 866
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 3 cut(s) 86, 593, 740
AcuI CTGAAG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 565
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 8 cut(s) 279, 341, 546, 625, 694, 700, 776, 992
AluI AGCT 8 cut(s) 279, 341, 546, 625, 694, 700, 776, 992
Alw21I GWGCWC 2 cut(s) 627, 862
Alw26I GTCTC 3 cut(s) 69, 491, 502
AlwI GGATC 3 cut(s) 36, 108, 866
Ama87I CYCGRG 1 cut(s) 1025
AoxI GGCC 5 cut(s) 218, 353, 419, 750, 1158
ApeKI GCWGC 3 cut(s) 236, 341, 842
ApoI RAATTY 3 cut(s) 86, 593, 740
Asp700I GAANNNNTTC 1 cut(s) 581
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 751
AsuHPI GGTGA 2 cut(s) 94, 844
AvaI CYCGRG 1 cut(s) 1025
BaeGI GKGCMC 1 cut(s) 508
BanII GRGCYC 2 cut(s) 627, 1012
BauI CACGAG 1 cut(s) 1176
BbsI GAAGAC 1 cut(s) 812
Bbv12I GWGCWC 2 cut(s) 627, 862
BbvI GCAGC 3 cut(s) 223, 328, 829
BceAI ACGGC 2 cut(s) 36, 264
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 69, 491, 502
BfaI CTAG 2 cut(s) 746, 1164
BfmI CTRYAG 3 cut(s) 160, 616, 706
BfuAI ACCTGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 311
BisI GCNGC 8 cut(s) 71, 136, 237, 342, 712, 843, 884, 1161
BlsI GCNGC 8 cut(s) 72, 137, 238, 343, 713, 844, 885, 1162
Bme1390I CCNGG 1 cut(s) 97
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 1025
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 751
BmiI GGNNCC 1 cut(s) 1009
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 812
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 716
Bsa29I ATCGAT 1 cut(s) 972
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 875
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 62, 741
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 972
BseDI CCNNGG 1 cut(s) 875
BseGI GGATG 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 62, 741
BseRI GAGGAG 3 cut(s) 348, 1079, 1082
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 3 cut(s) 223, 328, 829
Bsh1236I CGCG 3 cut(s) 48, 73, 588
BshFI GGCC 5 cut(s) 220, 355, 421, 752, 1160
BshVI ATCGAT 1 cut(s) 972
BsiHKAI GWGCWC 2 cut(s) 627, 862
BsiHKCI CYCGRG 1 cut(s) 1025
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 3 cut(s) 69, 491, 502
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 5 cut(s) 220, 355, 421, 752, 1160
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 1025
Bsp1286I GDGCHC 4 cut(s) 508, 627, 862, 1012
Bsp143I GATC 5 cut(s) 28, 113, 311, 871, 973
BspANI GGCC 5 cut(s) 220, 355, 421, 752, 1160
BspCNI CTCAG 1 cut(s) 267
BspDI ATCGAT 1 cut(s) 972
BspFNI CGCG 3 cut(s) 48, 73, 588
BspLI GGNNCC 1 cut(s) 1009
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 3 cut(s) 36, 108, 866
BspTNI GGTCTC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 1033
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 2 cut(s) 62, 741
BssECI CCNNGG 1 cut(s) 875
BssMI GATC 5 cut(s) 28, 113, 311, 871, 973
BssNI GRCGYC 1 cut(s) 382
BssSI CACGAG 1 cut(s) 1176
BssT1I CCWWGG 1 cut(s) 875
Bst2BI CACGAG 1 cut(s) 1176
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 106, 818
Bst6I CTCTTC 2 cut(s) 124, 454
BstACI GRCGYC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 839
BstC8I GCNNGC 3 cut(s) 540, 544, 1086
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 462
BstFNI CGCG 3 cut(s) 48, 73, 588
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 5 cut(s) 31, 116, 314, 874, 976
BstMAI GTCTC 3 cut(s) 69, 491, 502
BstMBI GATC 5 cut(s) 28, 113, 311, 871, 973
BstMWI GCNNNNNNNGC 6 cut(s) 144, 233, 839, 942, 1030, 1085
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 542, 1088
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 3 cut(s) 160, 616, 706
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 3 cut(s) 48, 73, 588
BstV1I GCAGC 3 cut(s) 223, 328, 829
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 3 cut(s) 28, 113, 311
BstYI RGATCY 3 cut(s) 28, 113, 311
Bsu15I ATCGAT 1 cut(s) 972
BsuRI GGCC 5 cut(s) 220, 355, 421, 752, 1160
BsuTUI ATCGAT 1 cut(s) 972
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 1 cut(s) 462
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 3 cut(s) 540, 544, 1086
CfoI GCGC 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 751
ClaI ATCGAT 1 cut(s) 972
CseI GACGC 2 cut(s) 47, 62
Csp6I GTAC 1 cut(s) 288
CviAII CATG 6 cut(s) 501, 539, 887, 977, 1085, 1156
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 254
DpnI GATC 5 cut(s) 30, 115, 313, 873, 975
DpnII GATC 5 cut(s) 28, 113, 311, 871, 973
DriI GACNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 2 cut(s) 124, 454
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 2 cut(s) 124, 454
EciI GGCGGA 2 cut(s) 38, 57
Ecl136II GAGCTC 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 875
Eco147I AGGCCT 2 cut(s) 220, 355
Eco24I GRGCYC 2 cut(s) 627, 1012
Eco31I GGTCTC 1 cut(s) 491
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 532
Eco88I CYCGRG 1 cut(s) 1025
EcoICRI GAGCTC 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 751
EcoRI GAATTC 2 cut(s) 86, 740
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 875
EcoT38I GRGCYC 2 cut(s) 627, 1012
ErhI CCWWGG 1 cut(s) 875
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 6 cut(s) 504, 542, 890, 980, 1088, 1159
FaqI GGGAC 1 cut(s) 92
FatI CATG 6 cut(s) 500, 538, 886, 976, 1084, 1155
FauI CCCGC 1 cut(s) 1026
FauNDI CATATG 1 cut(s) 410
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 8 cut(s) 71, 136, 237, 342, 712, 843, 884, 1161
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 2 cut(s) 627, 1012
Fsp4HI GCNGC 8 cut(s) 71, 136, 237, 342, 712, 843, 884, 1161
FspBI CTAG 2 cut(s) 746, 1164
GlaI GCGC 1 cut(s) 611
GluI GCNGC 8 cut(s) 71, 136, 237, 342, 712, 843, 884, 1161
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 5 cut(s) 220, 355, 421, 752, 1160
HgaI GACGC 2 cut(s) 47, 62
HhaI GCGC 1 cut(s) 612
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 6 cut(s) 504, 542, 890, 980, 1088, 1159
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 2 cut(s) 193, 649
HphI GGTGA 2 cut(s) 94, 844
Hpy166II GTNNAC 5 cut(s) 37, 55, 102, 380, 668
Hpy188I TCNGA 6 cut(s) 85, 246, 270, 576, 792, 1189
Hpy188III TCNNGA 3 cut(s) 439, 550, 863
Hpy8I GTNNAC 5 cut(s) 37, 55, 102, 380, 668
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 106, 818
HpyCH4IV ACGT 3 cut(s) 15, 382, 571
HpyCH4V TGCA 7 cut(s) 147, 284, 344, 538, 542, 833, 1084
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 233, 839, 942, 1030, 1085
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 3 cut(s) 15, 382, 571
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 6 cut(s) 504, 542, 890, 980, 1088, 1159
HspAI GCGC 1 cut(s) 610
Kzo9I GATC 5 cut(s) 28, 113, 311, 871, 973
LmnI GCTCC 5 cut(s) 691, 865, 989, 1007, 1030
Lsp1109I GCAGC 3 cut(s) 223, 328, 829
LweI GCATC 1 cut(s) 792
MaeI CTAG 2 cut(s) 746, 1164
MaeII ACGT 3 cut(s) 15, 382, 571
MaeIII GTNAC 3 cut(s) 16, 187, 304
MalI GATC 5 cut(s) 30, 115, 313, 873, 975
MbiI CCGCTC 1 cut(s) 1033
MboI GATC 5 cut(s) 28, 113, 311, 871, 973
MboII GAAGA 8 cut(s) 82, 111, 381, 441, 812, 952, 1103, 1137
MflI RGATCY 3 cut(s) 28, 113, 311
MhlI GDGCHC 4 cut(s) 508, 627, 862, 1012
MluCI AATT 8 cut(s) 86, 323, 372, 492, 593, 740, 931, 1016
MroXI GAANNNNTTC 1 cut(s) 581
MseI TTAA 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 3 cut(s) 48, 73, 588
MwoI GCNNNNNNNGC 6 cut(s) 144, 233, 839, 942, 1030, 1085
NdeI CATATG 1 cut(s) 410
NdeII GATC 5 cut(s) 28, 113, 311, 871, 973
NlaIII CATG 6 cut(s) 504, 542, 890, 980, 1088, 1159
NlaIV GGNNCC 1 cut(s) 1009
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 16, 304
NspI RCATGY 2 cut(s) 542, 1088
PaeI GCATGC 2 cut(s) 542, 1088
PceI AGGCCT 2 cut(s) 220, 355
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 193, 649
PkrI GCNGC 8 cut(s) 72, 137, 238, 343, 713, 844, 885, 1162
Psp124BI GAGCTC 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 1009
PspPI GGNCC 1 cut(s) 751
PsuI RGATCY 3 cut(s) 28, 113, 311
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SacI GAGCTC 1 cut(s) 627
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 8 cut(s) 71, 136, 237, 342, 712, 843, 884, 1161
Sau3AI GATC 5 cut(s) 28, 113, 311, 871, 973
Sau96I GGNCC 1 cut(s) 751
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 4 cut(s) 508, 627, 862, 1012
SfaNI GCATC 1 cut(s) 792
SfcI CTRYAG 3 cut(s) 160, 616, 706
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SphI GCATGC 2 cut(s) 542, 1088
Sse9I AATT 8 cut(s) 86, 323, 372, 492, 593, 740, 931, 1016
SseBI AGGCCT 2 cut(s) 220, 355
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 746, 1164
SstI GAGCTC 1 cut(s) 627
StuI AGGCCT 2 cut(s) 220, 355
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 2 cut(s) 106, 818
TaiI ACGT 3 cut(s) 18, 385, 574
TaqI TCGA 2 cut(s) 36, 972
TasI AATT 8 cut(s) 86, 323, 372, 492, 593, 740, 931, 1016
TauI GCSGC 5 cut(s) 73, 138, 714, 886, 1163
TfiI GAWTC 2 cut(s) 193, 649
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TseFI GTSAC 2 cut(s) 16, 304
TseI GCWGC 3 cut(s) 236, 341, 842
Tsp45I GTSAC 2 cut(s) 16, 304
TspDTI ATGAA 4 cut(s) 397, 451, 732, 952
XapI RAATTY 3 cut(s) 86, 593, 740
XceI RCATGY 2 cut(s) 542, 1088
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 581
XspI CTAG 2 cut(s) 746, 1164
ZraI GACGTC 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.