AT5G02040

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011985
Physical Location & Seq
Forward (+)
400899 .. 402990
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02040.2

Sequence Viewer

Length: 630 bp
ATGGATTGGGGAAACGTAACGGTTGATGATCTCTTCGATGCTCTCCGAGAAGTTGACTGGTCGTCTCCGCCGCGTCCTCCGTCTGAGTTCTTCTCAAGGTTCACCGTTCCTAAATCTGTCCCTAAATGGGATAGTCGCCTCAAGTGCAATCTCTACTACTACCGAACAAACTATTTCATCATGATCGTCGTTATACTTGGATTGGGAGTCCTTACAAGGCCTTTAGCGATCTTCGCTGCGCTTTTGACAGCATTAAGTTTGGCATTTCTAAATGACAGCTTTGCAGGTTCTTTTAGTGAGAAGGCGACACGAACCGTCAGAAGATTCTCTCCACAGTTAGCTGCTAAAATGAGACCTCCTTTGACACCTGTCACTCGTGGGCGTCCATCATCAAAGAGAGCAATCCATGTATGTGGTCAACCCCGTTGGGTTTTTGTCTTGACATGCTCACTTGTGAGTTTTGCTCTTTGGTATATTTCCTCTGGTTTGCTCAGAGTCTCGGTTGCGCTACTCATTGCACATCTTGCAACAATTCTTCATGCAAGCTTGAGAACACCGAACTTGAAGGCACGTTTTAACACATTTAGGGAGGAATTCCGAGCAGTATGGCGTAACTACAGCGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 PRA1

Protein Analysis

209

Amino Acids

23.83

Weight (kDa)

10.44

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 20 - 193 1.8e-34 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11397 AT5G02040 AT5G02040 AT5G05987
fragaria_vesca FvH4_6g12950
malus_domestica MD04G1136600.v1.1 MD12G1150900.v1.1
prunus_persica Prupe.6G262800_v2.0.a1 Prupe.6G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465061
rosa_laevigata RLG00000024659
rosa_multiflora Rmu_sc0004362.1_g000018
rosa_roxburghii Rroxscaffold_6G00415290
rosa_rugosa Rorug03G0075000
rosa_samantha Rh3BG138500 Rh3CG140900 Rh3CG149200 Rh3DG140000
rosa_wichuraiana Rw3G011330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 275
AccII CGCG 1 cut(s) 73
AciI CCGC 2 cut(s) 68, 71
AcsI RAATTY 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 565
AhdI GACNNNNNGTC 1 cut(s) 61
AluBI AGCT 3 cut(s) 279, 341, 546
AluI AGCT 3 cut(s) 279, 341, 546
Alw26I GTCTC 3 cut(s) 69, 346, 502
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 236, 341
ApoI RAATTY 1 cut(s) 593
AspLEI GCGC 2 cut(s) 241, 508
AsuHPI GGTGA 1 cut(s) 94
BauI CACGAG 1 cut(s) 375
BbvI GCAGC 2 cut(s) 223, 328
BccI CCATC 1 cut(s) 394
BcoDI GTCTC 3 cut(s) 69, 346, 502
BfmI CTRYAG 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 3 cut(s) 71, 237, 342
BlsI GCNGC 3 cut(s) 72, 238, 343
BmeRI GACNNNNNGTC 1 cut(s) 61
BmsI GCATC 1 cut(s) 28
BoxI GACNNNNGTC 1 cut(s) 368
BplI GAGNNNNNCTC 4 cut(s) 77, 109, 448, 480
BpuEI CTTGAG 3 cut(s) 79, 125, 568
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 2 cut(s) 75, 505
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 223, 328
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 220
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 3 cut(s) 69, 346, 502
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 346
Bsp143I GATC 3 cut(s) 28, 183, 228
BspACI CCGC 2 cut(s) 68, 71
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 2 cut(s) 76, 504
BspFNI CGCG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 180
BspMI ACCTGC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 1 cut(s) 62
BssMI GATC 3 cut(s) 28, 183, 228
BssNI GRCGYC 1 cut(s) 382
BssSI CACGAG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 375
Bst4CI ACNGT 4 cut(s) 22, 106, 316, 336
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 2 cut(s) 84, 491
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 2 cut(s) 241, 508
BstKTI GATC 3 cut(s) 31, 186, 231
BstMAI GTCTC 3 cut(s) 69, 346, 502
BstMBI GATC 3 cut(s) 28, 183, 228
BstMWI GCNNNNNNNGC 3 cut(s) 144, 233, 524
BstNSI RCATGY 1 cut(s) 447
BstPAI GACNNNNGTC 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 616
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 223, 328
BstXI CCANNNNNNTGG 1 cut(s) 413
BsuRI GGCC 1 cut(s) 220
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 544
CciI TCATGA 1 cut(s) 180
CfoI GCGC 2 cut(s) 241, 508
CseI GACGC 2 cut(s) 62, 371
CviAII CATG 4 cut(s) 181, 407, 444, 539
CviJI RGCY 4 cut(s) 220, 279, 341, 546
CviKI_1 RGCY 4 cut(s) 220, 279, 341, 546
DdeI CTNAG 2 cut(s) 84, 491
DpnI GATC 3 cut(s) 30, 185, 230
DpnII GATC 3 cut(s) 28, 183, 228
DriI GACNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 38
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 184, 410, 447, 542
FaiI YATR 8 cut(s) 182, 194, 408, 412, 445, 474, 540, 607
FaqI GGGAC 1 cut(s) 104
FatI CATG 4 cut(s) 180, 406, 443, 538
Fnu4HI GCNGC 3 cut(s) 71, 237, 342
Fsp4HI GCNGC 3 cut(s) 71, 237, 342
GlaI GCGC 2 cut(s) 240, 507
GluI GCNGC 3 cut(s) 71, 237, 342
HaeIII GGCC 1 cut(s) 220
HgaI GACGC 2 cut(s) 62, 371
HhaI GCGC 2 cut(s) 241, 508
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 4 cut(s) 184, 410, 447, 542
Hin6I GCGC 2 cut(s) 239, 506
HinP1I GCGC 2 cut(s) 239, 506
HincII GTYRAC 2 cut(s) 55, 419
HindII GTYRAC 2 cut(s) 55, 419
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 3 cut(s) 207, 324, 495
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 3 cut(s) 55, 102, 419
Hpy188I TCNGA 5 cut(s) 47, 85, 320, 494, 599
Hpy188III TCNNGA 2 cut(s) 181, 439
Hpy8I GTNNAC 3 cut(s) 55, 102, 419
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 295, 559
HpyCH4III ACNGT 4 cut(s) 22, 106, 316, 336
HpyCH4IV ACGT 2 cut(s) 15, 571
HpyCH4V TGCA 5 cut(s) 147, 284, 518, 527, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 233, 524
HpyF3I CTNAG 2 cut(s) 84, 491
HpySE526I ACGT 2 cut(s) 15, 571
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 4 cut(s) 184, 410, 447, 542
HspAI GCGC 2 cut(s) 239, 506
Kzo9I GATC 3 cut(s) 28, 183, 228
LpnPI CCDG 4 cut(s) 43, 270, 381, 468
Lsp1109I GCAGC 2 cut(s) 223, 328
LweI GCATC 1 cut(s) 28
MaeII ACGT 2 cut(s) 15, 571
MaeIII GTNAC 3 cut(s) 16, 370, 611
MalI GATC 3 cut(s) 30, 185, 230
MboI GATC 3 cut(s) 28, 183, 228
MboII GAAGA 5 cut(s) 25, 82, 223, 333, 527
MluCI AATT 2 cut(s) 531, 593
MlyI GAGTC 2 cut(s) 216, 504
MnlI CCTC 5 cut(s) 87, 149, 366, 490, 583
MseI TTAA 2 cut(s) 254, 576
MslI CAYNNNNRTG 1 cut(s) 411
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 144, 233, 524
NdeII GATC 3 cut(s) 28, 183, 228
NlaIII CATG 4 cut(s) 184, 410, 447, 542
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 447
PagI TCATGA 1 cut(s) 180
PceI AGGCCT 1 cut(s) 220
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 3 cut(s) 72, 238, 343
PleI GAGTC 2 cut(s) 215, 503
PpsI GAGTC 2 cut(s) 215, 503
PshAI GACNNNNGTC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 2 cut(s) 254, 576
SatI GCNGC 3 cut(s) 71, 237, 342
Sau3AI GATC 3 cut(s) 28, 183, 228
SchI GAGTC 2 cut(s) 216, 504
SetI ASST 9 cut(s) 18, 101, 281, 289, 343, 358, 370, 548, 574
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 616
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 3 cut(s) 94, 140, 547
SmoI CTYRAG 3 cut(s) 94, 140, 547
Sse9I AATT 2 cut(s) 531, 593
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 2 cut(s) 68, 71
StuI AGGCCT 1 cut(s) 220
TaaI ACNGT 4 cut(s) 22, 106, 316, 336
TaiI ACGT 2 cut(s) 18, 574
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 531, 593
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 2 cut(s) 254, 576
Tru9I TTAA 2 cut(s) 254, 576
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 236, 341
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 166, 527
TspGWI ACGGA 1 cut(s) 69
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.