AT3G11560

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
3639412 .. 3646061
6650 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11560.1

Sequence Viewer

Length: 1860 bp
ATGGCAGCTAGACTACAACGACCTGGGCTTGTATCCTCAAGCTCTACTTCAAAACCATGTCTTCCAAGGATGTCCATTGTTACTTTCATATCCTGCAAAAGGACTGTACACTTGGAGTACTTATCAAATTGCTTGAGCAATCCGAGGAGCCAATTGTTTGTTAGATATGGTTTTCTGGAAAGGAGCAACAAGAAGAAATCACAGAGGCTGGTCTTGGCATCTGCTGAAGATGGAGTAGCTATTAATGGAAGTCCTCAGCCAAGATCTAGTAGTAATTTGGAGGACATGAGGACTAGTTTCACCGGATCATTACAAGACGAAAACAATTCTAATGGACTTAACCAGTCTTTGCATGATGCTGCTAGATCTATTGAATTGGCTGTTAAAGAGAAGATTACTCCGTCCAGATTTTCGTGGTTTCCTTCGACTTGGCTTGGTGCTGATAAATATGCATGGGTGAAGACTCTTTCGTATCAGGCTTCTCTGTACTCCTTACTGCAAGCAGTAAATGAGATTTCATCTAGAGGCAATTACAGAGACGAGGATATTAATGTCTTTGTTCAAAGAAGCTTATCACGCCAAGCTGCTCCCCTTGAGAATATGATGCGAGAGAATCTTTCTTCCAAGCATCCTAAAGCCTATGAATGGTTTTGGTCCGAGCAAGTTCCTTCCGTGGTGACATCTTTTGTGAATTATCTTGAGGGGGACCAACGTTTTGTTGCTGCCACTTCTGTCTATGCAAAAGGAAAGTCCGCAGCTGCAAGTAATGAGATTGAAGTGTCACTTCTCATGCTTGTACTCAATTGCATTGCAGCAATCACGAAAGTTGGCCCAGCAAAATTTTCCTGCCCACCCTTCTTCTCTATGATTCCAGATACAACTGGAAGATTGATGGAAAAACTTGTAGACTTCGTTCCACTCCCTCAAGCGTATCATTCAATCAAAAGCATAGGCCTACAAAGAGAATTTCTTACTCATTTTGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACATTGATACAGATGAAGTTATTTTCTGGGTTGATCTTATACAGAAACAACTGCAGCGGGCTATAGATAGGGAGAAAATATGGTCAAAGTTAACAACATCCGAAAGTATAGAGGTTTTGGAGAGAGATTTAGCAATTTTTGGATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGCTGCAAATGGTTTTGATTCTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTTATTGGAGGCAGCGTCCTGTACTATCCTCAACTTTCAGCCATCAGTTCATACCAGCTGTATGTAGAGGTTGTTTGCGAAGAACTAGAATGGATTCCTTTCTATCCAAACAATACTGGAACACAGCCACCAAACCAATCACATGGGCATAAGACCAAACCAGAAGGACCACCCAATTATGAAGTTATTCCCCAACTGTTGGATGTTTGTTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATGGCCAGAGAATCCATCTAATGTCAAGGCAGCAAAATTCTTATCTAAGGGGCACAAGACTTTGGTTCGGTGTAAAGAAGAACTGGGGATATTAAAGAATGCATCATCAATTGTTAGAGAGTCGAACTCATTTGACAAGGCCCTAGAAAGTGTAGATGAGGCCCTCGTTAGACTGGAAAGCCTGCTACAGGAGTTGTATGTATCAAACTCATCGTCTGGAAAGGAACAAATAAAAGCCGCGTGCTCTGACCTAGAGAAAATACGGAAGCTTAAGAAAGAGGCTGAATTTCTGGAGGCAACTTTCAGAGCCAAAGCAGCTTCCTTGCAACAGGTTTTTTTTTTTCATTGTCACTTTTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

619

Amino Acids

69.68

Weight (kDa)

8.32

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1450
AccI GTMKAC 1 cut(s) 906
AccII CGCG 2 cut(s) 990, 1736
AciI CCGC 3 cut(s) 753, 1072, 1734
AclI AACGTT 1 cut(s) 712
AclWI GGATC 1 cut(s) 313
AcoI YGGCCR 1 cut(s) 1499
AcsI RAATTY 4 cut(s) 839, 965, 1532, 1781
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 5 cut(s) 108, 119, 488, 798, 1274
AfiI CCNNNNNNNGG 4 cut(s) 99, 645, 1450, 1684
AflII CTTAAG 1 cut(s) 1766
AgsI TTSAA 5 cut(s) 51, 374, 563, 776, 939
AhlI ACTAGT 1 cut(s) 293
AjnI CCWGG 1 cut(s) 22
Alw21I GWGCWC 2 cut(s) 1184, 1742
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 5 cut(s) 829, 952, 1499, 1635, 1656
ApoI RAATTY 4 cut(s) 839, 965, 1532, 1781
ArsI GACNNNNNNTTYG 6 cut(s) 698, 730, 734, 766, 1694, 1726
AseI ATTAAT 2 cut(s) 243, 549
Asp700I GAANNNNTTC 2 cut(s) 1344, 1437
AspLEI GCGC 1 cut(s) 992
AspS9I GGNCC 7 cut(s) 654, 706, 830, 983, 1418, 1636, 1657
AsuHPI GGTGA 4 cut(s) 292, 469, 688, 1025
AvaII GGWCC 4 cut(s) 654, 706, 983, 1418
BaeGI GKGCMC 1 cut(s) 1551
BalI TGGCCA 1 cut(s) 1501
BbsI GAAGAC 3 cut(s) 53, 467, 1242
Bbv12I GWGCWC 2 cut(s) 1184, 1742
BbvCI CCTCAGC 1 cut(s) 255
BccI CCATC 4 cut(s) 224, 886, 1301, 1519
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 531
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 8 cut(s) 9, 267, 294, 363, 522, 1337, 1640, 1748
BfmI CTRYAG 4 cut(s) 1067, 1077, 1472, 1682
BfrI CTTAAG 1 cut(s) 1766
BfuI GTATCC 1 cut(s) 43
BglII AGATCT 2 cut(s) 263, 365
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 4 cut(s) 654, 706, 983, 1418
BmgT120I GGNCC 7 cut(s) 654, 706, 830, 983, 1418, 1636, 1657
BmiI GGNNCC 2 cut(s) 149, 707
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 1589
BmsI GCATC 6 cut(s) 227, 346, 594, 637, 1258, 1607
BmuI ACTGGG 1 cut(s) 1589
BpiI GAAGAC 3 cut(s) 53, 467, 1242
BplI GAGNNNNNCTC 2 cut(s) 1607, 1639
BpmI CTGGAG 2 cut(s) 1241, 1808
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 5 cut(s) 22, 154, 614, 719, 909
BsaJI CCNNGG 4 cut(s) 23, 65, 143, 672
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 1251, 1281
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 645, 1450, 1684
Bse1I ACTGG 5 cut(s) 343, 886, 1372, 1584, 1674
Bse3DI GCAATG 2 cut(s) 807, 1164
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 4 cut(s) 23, 65, 143, 672
BseGI GGATG 4 cut(s) 75, 628, 1112, 1459
BseLI CCNNNNNNNGG 4 cut(s) 99, 645, 1450, 1684
BseMI GCAATG 2 cut(s) 807, 1164
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 5 cut(s) 343, 886, 1372, 1584, 1674
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 1551
BseYI CCCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 1021
Bsh1236I CGCG 2 cut(s) 990, 1736
BshFI GGCC 5 cut(s) 831, 954, 1501, 1637, 1658
BsiHKAI GWGCWC 2 cut(s) 1184, 1742
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 4 cut(s) 99, 645, 1450, 1684
BsmAI GTCTC 1 cut(s) 531
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 1 cut(s) 1600
BsnI GGCC 5 cut(s) 831, 954, 1501, 1637, 1658
Bsp1286I GDGCHC 3 cut(s) 1184, 1551, 1742
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 4 cut(s) 263, 305, 365, 1048
BspACI CCGC 3 cut(s) 753, 1072, 1734
BspANI GGCC 5 cut(s) 831, 954, 1501, 1637, 1658
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 2 cut(s) 990, 1736
BspLI GGNNCC 2 cut(s) 149, 707
BspMAI CTGCAG 1 cut(s) 1071
BspPI GGATC 1 cut(s) 313
BspTI CTTAAG 1 cut(s) 1766
BsrDI GCAATG 2 cut(s) 807, 1164
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 5 cut(s) 343, 886, 1372, 1584, 1674
BssECI CCNNGG 4 cut(s) 23, 65, 143, 672
BssMI GATC 4 cut(s) 263, 305, 365, 1048
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 106, 1188, 1449
BstAFI CTTAAG 1 cut(s) 1766
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 4 cut(s) 501, 1074, 1679, 1738
BstDEI CTNAG 2 cut(s) 255, 1542
BstDSI CCRYGG 1 cut(s) 672
BstENI CCTNNNNNAGG 2 cut(s) 97, 1682
BstF5I GGATG 4 cut(s) 75, 628, 1112, 1459
BstFNI CGCG 2 cut(s) 990, 1736
BstHHI GCGC 1 cut(s) 992
BstKTI GATC 4 cut(s) 266, 308, 368, 1051
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 4 cut(s) 263, 305, 365, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 576, 1811
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 4 cut(s) 1067, 1077, 1472, 1682
BstSLI GKGCMC 1 cut(s) 1551
BstUI CGCG 2 cut(s) 990, 1736
BstV2I GAAGAC 3 cut(s) 53, 467, 1242
BstX2I RGATCY 2 cut(s) 263, 365
BstXI CCANNNNNNTGG 1 cut(s) 1394
BstYI RGATCY 2 cut(s) 263, 365
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 5 cut(s) 831, 954, 1501, 1637, 1658
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 4 cut(s) 75, 628, 1112, 1459
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 1 cut(s) 1002
Cac8I GCNNGC 4 cut(s) 501, 1074, 1679, 1738
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 1 cut(s) 992
Cfr13I GGNCC 7 cut(s) 654, 706, 830, 983, 1418, 1636, 1657
CseI GACGC 1 cut(s) 1255
Csp6I GTAC 5 cut(s) 107, 118, 487, 797, 1273
CviAII CATG 6 cut(s) 57, 286, 353, 453, 790, 1394
CviQI GTAC 5 cut(s) 107, 118, 487, 797, 1273
DdeI CTNAG 2 cut(s) 255, 1542
DpnI GATC 4 cut(s) 265, 307, 367, 1050
DpnII GATC 4 cut(s) 263, 305, 365, 1048
EaeI YGGCCR 1 cut(s) 1499
Eco130I CCWWGG 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 954
Eco47I GGWCC 4 cut(s) 654, 706, 983, 1418
Eco57I CTGAAG 1 cut(s) 246
EcoNI CCTNNNNNAGG 2 cut(s) 97, 1682
EcoO109I RGGNCCY 2 cut(s) 1636, 1657
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 65
EcoT22I ATGCAT 2 cut(s) 454, 1600
ErhI CCWWGG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 6 cut(s) 60, 289, 356, 456, 793, 1397
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 768, 800
FaqI GGGAC 1 cut(s) 719
FatI CATG 6 cut(s) 56, 285, 352, 452, 789, 1393
FauI CCCGC 1 cut(s) 1065
FblI GTMKAC 1 cut(s) 906
FokI GGATG 4 cut(s) 82, 615, 1099, 1466
FspBI CTAG 8 cut(s) 9, 267, 294, 363, 522, 1337, 1640, 1748
GlaI GCGC 1 cut(s) 991
GsaI CCCAGC 1 cut(s) 836
GsuI CTGGAG 2 cut(s) 1241, 1808
HaeIII GGCC 5 cut(s) 831, 954, 1501, 1637, 1658
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 1255
HhaI GCGC 1 cut(s) 992
Hin1II CATG 6 cut(s) 60, 289, 356, 456, 793, 1397
Hin6I GCGC 1 cut(s) 990
HinP1I GCGC 1 cut(s) 990
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HindIII AAGCTT 2 cut(s) 568, 1763
HinfI GANTC 9 cut(s) 463, 613, 868, 1158, 1214, 1225, 1345, 1507, 1616
HpaI GTTAAC 1 cut(s) 1107
HpaII CCGG 1 cut(s) 303
HphI GGTGA 4 cut(s) 292, 469, 688, 1025
Hpy166II GTNNAC 3 cut(s) 109, 907, 1107
Hpy188I TCNGA 5 cut(s) 144, 658, 1117, 1744, 1802
Hpy188III TCNNGA 9 cut(s) 176, 405, 522, 698, 820, 872, 1220, 1713, 1787
Hpy8I GTNNAC 3 cut(s) 109, 907, 1107
HpyAV CCTTC 4 cut(s) 432, 678, 865, 1409
HpyCH4III ACNGT 3 cut(s) 106, 1188, 1449
HpyCH4IV ACGT 1 cut(s) 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 576, 1811
HpyF3I CTNAG 2 cut(s) 255, 1542
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 6 cut(s) 60, 289, 356, 456, 793, 1397
HspAI GCGC 1 cut(s) 990
KspAI GTTAAC 1 cut(s) 1107
Kzo9I GATC 4 cut(s) 263, 305, 365, 1048
LmnI GCTCC 4 cut(s) 147, 183, 592, 1179
LweI GCATC 6 cut(s) 227, 346, 594, 637, 1258, 1607
MaeI CTAG 8 cut(s) 9, 267, 294, 363, 522, 1337, 1640, 1748
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 5 cut(s) 79, 676, 780, 1013, 1844
MalI GATC 4 cut(s) 265, 307, 367, 1050
MboI GATC 4 cut(s) 263, 305, 365, 1048
MfeI CAATTG 3 cut(s) 152, 802, 1605
MflI RGATCY 2 cut(s) 263, 365
MhlI GDGCHC 3 cut(s) 1184, 1551, 1742
MlsI TGGCCA 1 cut(s) 1501
MluNI TGGCCA 1 cut(s) 1501
MlyI GAGTC 2 cut(s) 457, 1625
MmeI TCCRAC 1 cut(s) 1431
Mox20I TGGCCA 1 cut(s) 1501
Mph1103I ATGCAT 2 cut(s) 454, 1600
MroXI GAANNNNTTC 2 cut(s) 1344, 1437
MscI TGGCCA 1 cut(s) 1501
MseI TTAA 9 cut(s) 243, 339, 384, 549, 1008, 1106, 1485, 1589, 1767
Msp20I TGGCCA 1 cut(s) 1501
MspA1I CMGCKG 3 cut(s) 758, 1072, 1309
MspCI CTTAAG 1 cut(s) 1766
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 3 cut(s) 152, 802, 1605
Mva1269I GAATGC 1 cut(s) 1600
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 2 cut(s) 990, 1736
MwoI GCNNNNNNNGC 2 cut(s) 576, 1811
NdeII GATC 4 cut(s) 263, 305, 365, 1048
NlaIII CATG 6 cut(s) 60, 289, 356, 456, 793, 1397
NlaIV GGNNCC 2 cut(s) 149, 707
NmuCI GTSAC 4 cut(s) 676, 780, 1013, 1844
NsiI ATGCAT 2 cut(s) 454, 1600
PceI AGGCCT 1 cut(s) 954
PctI GAATGC 1 cut(s) 1600
PdmI GAANNNNTTC 2 cut(s) 1344, 1437
PfeI GAWTC 7 cut(s) 613, 868, 1158, 1214, 1225, 1345, 1507
PflMI CCANNNNNTGG 1 cut(s) 1450
PleI GAGTC 2 cut(s) 457, 1624
PpsI GAGTC 2 cut(s) 457, 1624
PshBI ATTAAT 2 cut(s) 243, 549
Psp1406I AACGTT 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 832
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 149, 707
PspPI GGNCC 7 cut(s) 654, 706, 830, 983, 1418, 1636, 1657
PsrI GAACNNNNNNTAC 2 cut(s) 897, 929
PstI CTGCAG 1 cut(s) 1071
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 2 cut(s) 263, 365
PvuII CAGCTG 2 cut(s) 758, 1309
RsaI GTAC 5 cut(s) 108, 119, 488, 798, 1274
RsaNI GTAC 5 cut(s) 107, 118, 487, 797, 1273
SaqAI TTAA 9 cut(s) 243, 339, 384, 549, 1008, 1106, 1485, 1589, 1767
Sau3AI GATC 4 cut(s) 263, 305, 365, 1048
Sau96I GGNCC 7 cut(s) 654, 706, 830, 983, 1418, 1636, 1657
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 2 cut(s) 457, 1625
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 3 cut(s) 1184, 1551, 1742
SfaNI GCATC 6 cut(s) 227, 346, 594, 637, 1258, 1607
SfcI CTRYAG 4 cut(s) 1067, 1077, 1472, 1682
SinI GGWCC 4 cut(s) 654, 706, 983, 1418
SmlI CTYRAG 6 cut(s) 37, 133, 593, 698, 924, 1766
SmoI CTYRAG 6 cut(s) 37, 133, 593, 698, 924, 1766
SpeI ACTAGT 1 cut(s) 293
SseBI AGGCCT 1 cut(s) 954
SsiI CCGC 3 cut(s) 753, 1072, 1734
SspMI CTAG 8 cut(s) 9, 267, 294, 363, 522, 1337, 1640, 1748
StuI AGGCCT 1 cut(s) 954
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 3 cut(s) 106, 1188, 1449
TaiI ACGT 1 cut(s) 715
TaqI TCGA 2 cut(s) 425, 1619
TatI WGTACW 5 cut(s) 106, 117, 486, 796, 1272
TauI GCSGC 1 cut(s) 1736
TfiI GAWTC 7 cut(s) 613, 868, 1158, 1214, 1225, 1345, 1507
Tru1I TTAA 9 cut(s) 243, 339, 384, 549, 1008, 1106, 1485, 1589, 1767
Tru9I TTAA 9 cut(s) 243, 339, 384, 549, 1008, 1106, 1485, 1589, 1767
TscAI CASTG 1 cut(s) 1002
TseFI GTSAC 4 cut(s) 676, 780, 1013, 1844
Tsp45I GTSAC 4 cut(s) 676, 780, 1013, 1844
TspDTI ATGAA 8 cut(s) 76, 507, 657, 1044, 1153, 1290, 1446, 1829
TspGWI ACGGA 3 cut(s) 390, 661, 1774
TspRI CASTG 1 cut(s) 1002
Van91I CCANNNNNTGG 1 cut(s) 1450
Vha464I CTTAAG 1 cut(s) 1766
VpaK11BI GGWCC 4 cut(s) 654, 706, 983, 1418
VspI ATTAAT 2 cut(s) 243, 549
XagI CCTNNNNNAGG 2 cut(s) 97, 1682
XapI RAATTY 4 cut(s) 839, 965, 1532, 1781
XbaI TCTAGA 1 cut(s) 521
XmiI GTMKAC 1 cut(s) 906
XmnI GAANNNNTTC 2 cut(s) 1344, 1437
XspI CTAG 8 cut(s) 9, 267, 294, 363, 522, 1337, 1640, 1748
ZrmI AGTACT 1 cut(s) 119
Zsp2I ATGCAT 2 cut(s) 454, 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.