Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8463519.1

Orthogroup ID

OG0003899

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1253

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8463519.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 589 bp

ctcttcgaatccatggcattcgcgtaagccagctagaatacattattcctgcaataaagaattctactggggtcattcaaggaagagatggcttataagacttgctttgttggagcatagtgattcttacagtcttaagctccgaatggtgggatataagaactgctatctgagctctcaaagaggaagaaggttggggaacctctttccccgtacatctgctgacgatggtgttaccgttaatgggagtccgcaagcaagtaccagtagggatgttgaggagatgaaggtcaaacttaatcaatcacttcatggcgaagattctagtgacggacttgtccaatttttacatgaagctgccagggtttttgagttagcaataaaggaacaaggttccttctcaaagttatcttggttttcaactgcatggcttaatgtagacaatacatgggtcaaaacactgtcttatcaggcttcagtgtattcattattgcaagctgcaagtgagatagcatcccgaggggatggtagagatagagacataaatgtttttgtccaaaaaaggtattaccatacttgtattttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LETM1

Protein Analysis

195

Amino Acids

22.45

Weight (kDa)

9.49

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11560 AT3G11560 AT3G11560 AT3G11560 AT3G11560 AT5G06220 AT5G06220 AT5G06220
fragaria_vesca	FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540
malus_domestica	MD12G1031800.v1.1 MD14G1032100.v1.1
prunus_persica	Prupe.7G100800_v2.0.a1 Prupe.7G100800_v2.0.a1
pyrus_communis	pycom14g02890
rosa_chinensis	RchiOBHm_Chr3g0474881
rosa_laevigata	RLG00000023884
rosa_multiflora	Rmu_co8463519.1_g000001 Rmu_sc0008866.1_g000001 Rmu_sc0022080.1_g000001 Rmu_sc0022081.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406770
rosa_rugosa	Rorug03G0145100
rosa_samantha	Rh3AG194700 Rh3BG224500 Rh3CG219600 Rh3DG220200
rosa_wichuraiana	Rw3G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AasI	GACNNNNNNGTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	439
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	460
AfaI	GTAC	2 cut(s)	215, 263
AfiI	CCNNNNNNNGG	2 cut(s)	149, 244
AflII	CTTAAG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	79, 421
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	5 cut(s)	33, 140, 175, 357, 498
AluI	AGCT	5 cut(s)	33, 140, 175, 357, 498
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	517
ApeKI	GCWGC	2 cut(s)	357, 498
ApoI	RAATTY	1 cut(s)	60
AsuII	TTCGAA	1 cut(s)	6
AvaI	CYCGRG	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	344, 485
BccI	CCATC	3 cut(s)	82, 222, 519
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	34, 325
BfrI	CTTAAG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	358, 499
BlsI	GCNGC	2 cut(s)	359, 500
Bme1390I	CCNGG	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	201, 395
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	12, 361, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 244
Bse1I	ACTGG	2 cut(s)	72, 265
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	3 cut(s)	12, 361, 518
BseGI	GGATG	3 cut(s)	278, 513, 530
BseLI	CCNNNNNNNGG	2 cut(s)	149, 244
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	72, 265
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	344, 485
Bsh1236I	CGCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	149, 244
BsmAI	GTCTC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	517
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	201, 395
BspT104I	TTCGAA	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	72, 265
BssECI	CCNNGG	3 cut(s)	12, 361, 518
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	3 cut(s)	132, 239, 463
Bst6I	CTCTTC	2 cut(s)	8, 78
BstAFI	CTTAAG	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	31, 256, 496
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	278, 513, 530
BstFNI	CGCG	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	344, 485
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	278, 513, 530
BtsIMutI	CAGTG	2 cut(s)	459, 484
Cac8I	GCNNGC	3 cut(s)	31, 256, 496
Csp6I	GTAC	2 cut(s)	214, 262
CviAII	CATG	5 cut(s)	13, 312, 351, 427, 448
CviJI	RGCY	9 cut(s)	29, 33, 92, 140, 175, 357, 431, 474, 498
CviKI_1	RGCY	9 cut(s)	29, 33, 92, 140, 175, 357, 431, 474, 498
CviQI	GTAC	2 cut(s)	214, 262
DdeI	CTNAG	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	336
DseDI	GACNNNNNNGTC	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	8, 78
EarI	CTCTTC	2 cut(s)	8, 78
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	5 cut(s)	16, 315, 354, 430, 451
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	5 cut(s)	12, 311, 350, 426, 447
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	358, 499
FokI	GGATG	3 cut(s)	285, 500, 537
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	358, 499
FspBI	CTAG	2 cut(s)	34, 325
GluI	GCNGC	2 cut(s)	358, 499
Hin1II	CATG	5 cut(s)	16, 315, 354, 430, 451
HinfI	GANTC	4 cut(s)	8, 123, 248, 321
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	2 cut(s)	144, 172
Hpy188III	TCNNGA	1 cut(s)	517
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	184, 281, 407
HpyCH4III	ACNGT	3 cut(s)	132, 239, 463
HpyCH4V	TGCA	4 cut(s)	52, 426, 494, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	16, 315, 354, 430, 451
LmnI	GCTCC	2 cut(s)	113, 145
LpnPI	CCDG	7 cut(s)	43, 53, 62, 278, 347, 374, 456
Lsp1109I	GCAGC	2 cut(s)	344, 485
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	34, 325
MaeIII	GTNAC	2 cut(s)	233, 327
MboII	GAAGA	3 cut(s)	95, 199, 330
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	60, 342
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	177, 213, 272, 513
MseI	TTAA	4 cut(s)	136, 241, 298, 433
MspCI	CTTAAG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	172
NcoI	CCATGG	1 cut(s)	12
NlaIII	CATG	5 cut(s)	16, 315, 354, 430, 451
NlaIV	GGNNCC	2 cut(s)	201, 395
NmuCI	GTSAC	1 cut(s)	327
NspV	TTCGAA	1 cut(s)	6
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	8, 123, 321
PkrI	GCNGC	2 cut(s)	359, 500
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	201, 395
RsaI	GTAC	2 cut(s)	215, 263
RsaNI	GTAC	2 cut(s)	214, 262
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	136, 241, 298, 433
SatI	GCNGC	2 cut(s)	358, 499
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	1 cut(s)	522
SfuI	TTCGAA	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	2 cut(s)	60, 342
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	34, 325
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	132, 239, 463
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	60, 342
TfiI	GAWTC	3 cut(s)	8, 123, 321
Tru1I	TTAA	4 cut(s)	136, 241, 298, 433
Tru9I	TTAA	4 cut(s)	136, 241, 298, 433
TscAI	CASTG	2 cut(s)	466, 484
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	2 cut(s)	357, 498
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	4 cut(s)	300, 300, 367, 475
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	2 cut(s)	466, 484
Vha464I	CTTAAG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	439
XspI	CTAG	2 cut(s)	34, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.