Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008866.1

Orthogroup ID

OG0003899

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4596

Gene Structure 4596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008866.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ccggattctggtcgccggaacccggtcaccgttcgccagagtccggtcaccggtcgccggtcgccggagaccgcgccggccacttgtcaccggagcacagcaaggtggagggccttggagagtgttgacggtgctgtagtaagactagaacagctgcttcaggatttgcatgtctcaaattcgaactcaggaaaagagcatataaaagctgcttgttctgacctcgaaaaaataaggaaacttaaaaaagaggctgaatttctggaggcatccttcagagctaaagcagcttcccttcggcaggaagatgatgacaacaatccccctcctcctggtggcaaccagaaacagttctttacagggaaaaaaaggaagagtgctaataaagccaccgatgggccaaacagagctgccagtagctatagcggattgtggagctccttcatgcgacctccaaccagaaagcctaatgctgagttgactgtggatgaatctgaaaatgacattgaagaactggaatcaaataaaatccagcgttttgaacttctaaggaatgagcttatagaactagaaaaaagggtgcaaaggagcgctgaccaatcagaaaatgaggaggatgttaagcctgctgatgataggtctaggtaccgcaatgatcctggagctgctcaactagtcaaggttcagaagaaagagaatatcatcgaaaggtcattggacaaattaaaagaaaccagcacggatgtgtggcaaggaacccaattgttggctattgatgttggtgctgctacgggtttgcttagaagggtcttgattggagatgaacttactgaaaaagagaaaaaagttcttcgaagaactatgactgacgtggcatcagttgttcctatcggtgtcttaatgcttcttcctgtcactgctgttggacatgcggcgatgttagctgctattcagagatatgtaccatctttgataccgtcaacatatggatcagaaaggttggatctcttgaggaagattcagaaaatgaaaatggaaagcagtgaagacaattccaatgaaagtgtggaggaaatagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LETM1

Protein Analysis

360

Amino Acids

40.18

Weight (kDa)

8.5

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11560 AT3G11560 AT3G11560 AT3G11560 AT3G11560 AT5G06220 AT5G06220 AT5G06220
fragaria_vesca	FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540
malus_domestica	MD12G1031800.v1.1 MD14G1032100.v1.1
prunus_persica	Prupe.7G100800_v2.0.a1 Prupe.7G100800_v2.0.a1
pyrus_communis	pycom14g02890
rosa_chinensis	RchiOBHm_Chr3g0474881
rosa_laevigata	RLG00000023884
rosa_multiflora	Rmu_co8463519.1_g000001 Rmu_sc0008866.1_g000001 Rmu_sc0022080.1_g000001 Rmu_sc0022081.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406770
rosa_rugosa	Rorug03G0145100
rosa_samantha	Rh3AG194700 Rh3BG224500 Rh3CG219600 Rh3DG220200
rosa_wichuraiana	Rw3G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	645
AccB1I	GGYRCC	1 cut(s)	645
AccB7I	CCANNNNNTGG	1 cut(s)	766
AccII	CGCG	1 cut(s)	74
AciI	CCGC	4 cut(s)	72, 426, 649, 932
AclWI	GGATC	3 cut(s)	650, 997, 1011
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	178, 257
AcuI	CTGAAG	2 cut(s)	143, 259
AfaI	GTAC	2 cut(s)	647, 963
AfeI	AGCGCT	1 cut(s)	592
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	509, 542
AhlI	ACTAGT	1 cut(s)	673
AjiI	CACGTC	1 cut(s)	871
AjnI	CCWGG	2 cut(s)	331, 658
AleI	CACNNNNGTG	1 cut(s)	743
Alw21I	GWGCWC	2 cut(s)	98, 440
Alw26I	GTCTC	2 cut(s)	62, 178
AlwI	GGATC	3 cut(s)	650, 997, 1011
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	3 cut(s)	78, 111, 398
ApeKI	GCWGC	7 cut(s)	154, 209, 287, 410, 665, 785, 944
ApoI	RAATTY	2 cut(s)	178, 257
AsiGI	ACCGGT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	350
Asp718I	GGTACC	1 cut(s)	645
AspLEI	GCGC	2 cut(s)	76, 593
AspS9I	GGNCC	2 cut(s)	111, 398
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	19, 40, 80
AsuII	TTCGAA	2 cut(s)	182, 853
BanI	GGYRCC	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	1053
Bbv12I	GWGCWC	2 cut(s)	98, 440
BbvI	GCAGC	7 cut(s)	141, 196, 299, 397, 652, 772, 931
BccI	CCATC	2 cut(s)	389, 973
BciT130I	CCWGG	2 cut(s)	333, 660
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	62, 178
BcuI	ACTAGT	1 cut(s)	673
BfaI	CTAG	4 cut(s)	146, 569, 642, 674
BfmI	CTRYAG	2 cut(s)	135, 421
BfoI	RGCGCY	1 cut(s)	594
BisI	GCNGC	8 cut(s)	155, 210, 288, 411, 666, 786, 933, 945
BlsI	GCNGC	8 cut(s)	156, 211, 289, 412, 667, 787, 934, 946
Bme1390I	CCNGG	3 cut(s)	23, 333, 660
BmgBI	CACGTC	1 cut(s)	871
BmgT120I	GGNCC	2 cut(s)	111, 398
BmiI	GGNNCC	3 cut(s)	20, 647, 757
BmrFI	CCNGG	3 cut(s)	23, 333, 660
BmsI	GCATC	2 cut(s)	278, 884
BpiI	GAAGAC	1 cut(s)	1053
BpmI	CTGGAG	2 cut(s)	284, 681
Bpu14I	TTCGAA	2 cut(s)	182, 853
BpuEI	CTTGAG	1 cut(s)	1030
BpuMI	CCSGG	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	3 cut(s)	43, 50, 90
Bse118I	RCCGGY	3 cut(s)	50, 57, 76
Bse1I	ACTGG	2 cut(s)	414, 519
Bse3DI	GCAATG	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	333, 660
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	4 cut(s)	269, 493, 622, 748
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	2 cut(s)	201, 465
BseNI	ACTGG	2 cut(s)	414, 519
BseRI	GAGGAG	2 cut(s)	318, 626
BseXI	GCAGC	7 cut(s)	141, 196, 299, 397, 652, 772, 931
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	2 cut(s)	55, 62
BshFI	GGCC	3 cut(s)	80, 113, 400
BshNI	GGYRCC	1 cut(s)	645
BshTI	ACCGGT	1 cut(s)	50
BsiEI	CGRYCG	2 cut(s)	55, 62
BsiHKAI	GWGCWC	2 cut(s)	98, 440
BsiSI	CCGG	9 cut(s)	2, 16, 23, 44, 51, 58, 65, 77, 91
BsmAI	GTCTC	2 cut(s)	62, 178
BsnI	GGCC	3 cut(s)	80, 113, 400
Bso31I	GGTCTC	1 cut(s)	62
Bsp119I	TTCGAA	2 cut(s)	182, 853
Bsp1286I	GDGCHC	2 cut(s)	98, 440
Bsp143I	GATC	3 cut(s)	655, 989, 1003
BspACI	CCGC	4 cut(s)	72, 426, 649, 932
BspANI	GGCC	3 cut(s)	80, 113, 400
BspCNI	CTCAG	2 cut(s)	200, 466
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	20, 647, 757
BspPI	GGATC	3 cut(s)	650, 997, 1011
BspT104I	TTCGAA	2 cut(s)	182, 853
BspT107I	GGYRCC	1 cut(s)	645
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	658
BsrFI	RCCGGY	3 cut(s)	50, 57, 76
BsrI	ACTGG	2 cut(s)	414, 519
BssAI	RCCGGY	3 cut(s)	50, 57, 76
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	3 cut(s)	655, 989, 1003
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	333, 660
Bst4CI	ACNGT	5 cut(s)	31, 131, 351, 484, 978
Bst6I	CTCTTC	1 cut(s)	368
BstBI	TTCGAA	2 cut(s)	182, 853
BstC8I	GCNNGC	2 cut(s)	78, 627
BstDEI	CTNAG	4 cut(s)	187, 474, 548, 800
BstEII	GGTNACC	2 cut(s)	25, 46
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	4 cut(s)	269, 493, 622, 748
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	76, 593
BstKTI	GATC	3 cut(s)	658, 992, 1006
BstMAI	GTCTC	2 cut(s)	62, 178
BstMBI	GATC	3 cut(s)	655, 989, 1003
BstMCI	CGRYCG	2 cut(s)	55, 62
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 386, 941
BstNI	CCWGG	2 cut(s)	333, 660
BstNSI	RCATGY	2 cut(s)	173, 932
BstPI	GGTNACC	2 cut(s)	25, 46
BstSCI	CCNGG	3 cut(s)	21, 331, 658
BstSFI	CTRYAG	2 cut(s)	135, 421
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	7 cut(s)	141, 196, 299, 397, 652, 772, 931
BstV2I	GAAGAC	1 cut(s)	1053
BstX2I	RGATCY	1 cut(s)	1003
BstYI	RGATCY	1 cut(s)	1003
BsuRI	GGCC	3 cut(s)	80, 113, 400
BtgZI	GCGATG	1 cut(s)	950
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	4 cut(s)	269, 493, 622, 748
BtsI	GCAGTG	2 cut(s)	915, 1048
BtsIMutI	CAGTG	2 cut(s)	915, 1048
Cac8I	GCNNGC	2 cut(s)	78, 627
CfoI	GCGC	2 cut(s)	76, 593
Cfr10I	RCCGGY	3 cut(s)	50, 57, 76
Cfr13I	GGNCC	2 cut(s)	111, 398
Csp6I	GTAC	2 cut(s)	646, 962
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	3 cut(s)	170, 445, 929
CviQI	GTAC	2 cut(s)	646, 962
DdeI	CTNAG	4 cut(s)	187, 474, 548, 800
DpnI	GATC	3 cut(s)	657, 991, 1005
DpnII	GATC	3 cut(s)	655, 989, 1003
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	62
Eco47III	AGCGCT	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	438
Eco57I	CTGAAG	2 cut(s)	143, 259
Eco91I	GGTNACC	2 cut(s)	25, 46
EcoICRI	GAGCTC	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	111
EcoO65I	GGTNACC	2 cut(s)	25, 46
EcoRII	CCWGG	2 cut(s)	331, 658
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	173, 448, 932
FatI	CATG	3 cut(s)	169, 444, 928
FauNDI	CATATG	1 cut(s)	985
Fnu4HI	GCNGC	8 cut(s)	155, 210, 288, 411, 666, 786, 933, 945
FokI	GGATG	4 cut(s)	256, 500, 629, 755
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	8 cut(s)	155, 210, 288, 411, 666, 786, 933, 945
FspBI	CTAG	4 cut(s)	146, 569, 642, 674
GlaI	GCGC	2 cut(s)	75, 592
GluI	GCNGC	8 cut(s)	155, 210, 288, 411, 666, 786, 933, 945
GsuI	CTGGAG	2 cut(s)	284, 681
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	80, 113, 400
HapII	CCGG	9 cut(s)	2, 16, 23, 44, 51, 58, 65, 77, 91
HhaI	GCGC	2 cut(s)	76, 593
Hin1II	CATG	3 cut(s)	173, 448, 932
Hin6I	GCGC	2 cut(s)	74, 591
HinP1I	GCGC	2 cut(s)	74, 591
HincII	GTYRAC	3 cut(s)	127, 480, 981
HindII	GTYRAC	3 cut(s)	127, 480, 981
HinfI	GANTC	5 cut(s)	5, 40, 491, 518, 1018
HpaII	CCGG	9 cut(s)	2, 16, 23, 44, 51, 58, 65, 77, 91
HphI	GGTGA	3 cut(s)	19, 40, 80
Hpy166II	GTNNAC	3 cut(s)	127, 480, 981
Hpy188I	TCNGA	8 cut(s)	220, 278, 496, 604, 687, 954, 994, 1023
Hpy188III	TCNNGA	5 cut(s)	161, 189, 263, 811, 1009
Hpy8I	GTNNAC	3 cut(s)	127, 480, 981
HpyAV	CCTTC	4 cut(s)	283, 305, 451, 798
HpyCH4III	ACNGT	5 cut(s)	31, 131, 351, 484, 978
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	2 cut(s)	169, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 386, 941
HpyF3I	CTNAG	4 cut(s)	187, 474, 548, 800
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	3 cut(s)	173, 448, 932
HspAI	GCGC	2 cut(s)	74, 591
KpnI	GGTACC	1 cut(s)	649
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	655, 989, 1003
LmnI	GCTCC	5 cut(s)	93, 435, 443, 588, 662
Lsp1109I	GCAGC	7 cut(s)	141, 196, 299, 397, 652, 772, 931
LweI	GCATC	2 cut(s)	278, 884
MaeI	CTAG	4 cut(s)	146, 569, 642, 674
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	4 cut(s)	25, 46, 86, 913
MalI	GATC	3 cut(s)	657, 991, 1005
MboI	GATC	3 cut(s)	655, 989, 1003
MboII	GAAGA	9 cut(s)	317, 385, 521, 700, 842, 867, 899, 1027, 1058
MfeI	CAATTG	1 cut(s)	761
MflI	RGATCY	1 cut(s)	1003
MhlI	GDGCHC	2 cut(s)	98, 440
MluCI	AATT	5 cut(s)	178, 257, 722, 761, 1051
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	3 cut(s)	479, 904, 981
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	4 cut(s)	243, 621, 725, 899
MslI	CAYNNNNRTG	1 cut(s)	743
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	9 cut(s)	2, 16, 23, 44, 51, 58, 65, 77, 91
MspR9I	CCNGG	3 cut(s)	23, 333, 660
MunI	CAATTG	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	333, 660
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	287, 386, 941
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	985
NdeII	GATC	3 cut(s)	655, 989, 1003
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	173, 448, 932
NlaIV	GGNNCC	3 cut(s)	20, 647, 757
NmuCI	GTSAC	4 cut(s)	25, 46, 86, 913
NspI	RCATGY	2 cut(s)	173, 932
NspV	TTCGAA	2 cut(s)	182, 853
OliI	CACNNNNGTG	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	4 cut(s)	5, 491, 518, 1018
PflMI	CCANNNNNTGG	1 cut(s)	766
PfoI	TCCNGGA	1 cut(s)	658
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	8 cut(s)	156, 211, 289, 412, 667, 787, 934, 946
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	331, 658
PspEI	GGTNACC	2 cut(s)	25, 46
PspGI	CCWGG	2 cut(s)	331, 658
PspN4I	GGNNCC	3 cut(s)	20, 647, 757
PspPI	GGNCC	2 cut(s)	111, 398
PsuI	RGATCY	1 cut(s)	1003
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	647, 963
RsaNI	GTAC	2 cut(s)	646, 962
RseI	CAYNNNNRTG	1 cut(s)	743
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	4 cut(s)	243, 621, 725, 899
SatI	GCNGC	8 cut(s)	155, 210, 288, 411, 666, 786, 933, 945
Sau3AI	GATC	3 cut(s)	655, 989, 1003
Sau96I	GGNCC	2 cut(s)	111, 398
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	3 cut(s)	23, 333, 660
SduI	GDGCHC	2 cut(s)	98, 440
SfaNI	GCATC	2 cut(s)	278, 884
SfcI	CTRYAG	2 cut(s)	135, 421
SfuI	TTCGAA	2 cut(s)	182, 853
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	1009
SmoI	CTYRAG	1 cut(s)	1009
SpeI	ACTAGT	1 cut(s)	673
Sse9I	AATT	5 cut(s)	178, 257, 722, 761, 1051
SsiI	CCGC	4 cut(s)	72, 426, 649, 932
SspMI	CTAG	4 cut(s)	146, 569, 642, 674
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	3 cut(s)	21, 331, 658
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	5 cut(s)	31, 131, 351, 484, 978
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	4 cut(s)	182, 225, 705, 853
TasI	AATT	5 cut(s)	178, 257, 722, 761, 1051
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	4 cut(s)	5, 491, 518, 1018
Tru1I	TTAA	4 cut(s)	243, 621, 725, 899
Tru9I	TTAA	4 cut(s)	243, 621, 725, 899
TscAI	CASTG	2 cut(s)	922, 1048
TseFI	GTSAC	4 cut(s)	25, 46, 86, 913
TseI	GCWGC	7 cut(s)	154, 209, 287, 410, 665, 785, 944
Tsp45I	GTSAC	4 cut(s)	25, 46, 86, 913
TspDTI	ATGAA	5 cut(s)	433, 504, 837, 1043, 1074
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	2 cut(s)	922, 1048
Van91I	CCANNNNNTGG	1 cut(s)	766
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	2 cut(s)	178, 257
XceI	RCATGY	2 cut(s)	173, 932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1063
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	4 cut(s)	146, 569, 642, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.