pycom14g02890

LETM1-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
2203068 .. 2206746
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g02890.3

Sequence Viewer

Length: 1389 bp
ATGGCCACTAAATTGTACCACAACGGCTTTCTATCTCCAAGCTCTTCAAATCCATGGCATTTGCGTAAACCAGCTACAATACATTATTCCTGCAATAAAGTGGTTGATTTGGATCACCTATTAAGTAGCTGGGCTTATTCAAAGAGAAGATGCCTCATAAGATTTTCTGTGTTAGAGCACAGTAATTGTTACAGTCTTAATCTCCAAGCAGTGGGCAATAGGAAACGCTATCTACATTTTCAAAAGTCCAGAGGAATGGATAGCCTAGTTCCACTGGCATCTGCTGATGATGGTGTTACGGTCAATGGGAGTCCCCAAGCAAGCACCAGAAGGGATGTTGAGGAGATAAAGGTCAAACTTAATCAATCATTTCAAGGTGAAGATTCTAGTGATGGACTTGTCCAATTTTTACATGAAGCAGCCAGGGTTTTTGAGTTAGCCATTAAGGAACAGTGTTCATTGTCAAAGTCTTCTTGGTTTTCAACTGCATGGCTTAGCGTAGACAAAAACGCCTGGCTCAAAACACTGTCTTATCAGGCTTCAGTGTATTCCTTATTGCAAGCAGCAAGCGAGATTGCATCTCGAGGGGATGGCAGAGACAGAGACATAAATGTCTTTGTCCAAAGGAGTTTATCAAGAGAATCTGCTTCCCTTGAGAGCTTAATCCGGGATCAACTATCAGCCAAGCAACCTGAAGCTTATGAGTGGTTTTTCTCTGAGCAAGTGCCCTTGGTGGTAACATCCTTTGTTAATTATTTTGAAGGCGACGCACGTTTTACTGCTGCAACCAATGTGTCTAGTGAGGGAACGCACTTGGGGTCTAGCAACACAAGTGACGTATCTCTCCTCATGCTTGCACTGACATGCAATGCCGCAATTACAAAACTTGGGCAAGCAAAAGTTTCGTGCCCTCAATTCTTTTCGACAATCCCAGATATAACCGGTAGATTCATGGACATGCTGGTGGATTTTGTTCCTATTCGCCAGGCCTATCTTTCTCTAAAGAATATAGGTCTACGCAGGGAGTTCCTTGTCCATTTTGGTCCTCGAGCTGCAGCATGTAGAGTGAAAATTGATCGATCAGAAGAAGTTGTTTTCTGGGTGAATCTTGTACAGAAGCAGTTGCAGCGAGCTATAGATAGAGAGCGAATATGGTCAAGACTAACAACATCCGAAAGTATTGAGGTATTGGAGAGGGATCTGGCTATATTTGGATTCTTTATTGCCTTGGGTAGAAGCACGCAGTCCTTTCTATCGGCAAATGGATTTGATGTGTTAGCTCGATCCGATTGGAGGCTTTGTGAGGTTCTTGATTGGGGGCAGCATCTTATACTATCCTCAGCTTTCGTCAATAAGTTCTTATCAATTGTATGTAGAGGTAGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

52.02

Weight (kDa)

8.65

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 611
AccB7I CCANNNNNTGG 1 cut(s) 211
AccI GTMKAC 2 cut(s) 501, 1015
AciI CCGC 1 cut(s) 873
AclWI GGATC 4 cut(s) 120, 678, 1206, 1278
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 525, 714
AfaI GTAC 2 cut(s) 17, 1113
AfiI CCNNNNNNNGG 2 cut(s) 211, 1293
AgeI ACCGGT 1 cut(s) 941
AgsI TTSAA 6 cut(s) 48, 141, 242, 374, 483, 761
AjnI CCWGG 3 cut(s) 422, 512, 984
AluBI AGCT 9 cut(s) 42, 74, 129, 660, 698, 1052, 1133, 1280, 1343
AluI AGCT 9 cut(s) 42, 74, 129, 660, 698, 1052, 1133, 1280, 1343
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 591, 597
AlwI GGATC 4 cut(s) 120, 678, 1206, 1278
Ama87I CYCGRG 2 cut(s) 582, 1047
AoxI GGCC 2 cut(s) 3, 987
ApeKI GCWGC 7 cut(s) 419, 563, 782, 1052, 1055, 1126, 1321
AsiGI ACCGGT 1 cut(s) 941
AspS9I GGNCC 1 cut(s) 1043
AsuC2I CCSGG 1 cut(s) 668
AsuHPI GGTGA 3 cut(s) 107, 389, 1114
AvaI CYCGRG 2 cut(s) 582, 1047
AvaII GGWCC 1 cut(s) 1043
BaeGI GKGCMC 2 cut(s) 729, 911
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 1339
BbvI GCAGC 7 cut(s) 431, 575, 769, 1039, 1067, 1138, 1333
BccI CCATC 3 cut(s) 284, 386, 584
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 885, 919
BciT130I CCWGG 3 cut(s) 424, 514, 986
BcnI CCSGG 1 cut(s) 668
BcoDI GTCTC 2 cut(s) 591, 597
BfaI CTAG 4 cut(s) 266, 387, 798, 822
BfmI CTRYAG 2 cut(s) 1053, 1134
BisI GCNGC 8 cut(s) 420, 564, 783, 873, 1053, 1056, 1127, 1322
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 8 cut(s) 421, 565, 784, 874, 1054, 1057, 1128, 1323
Bme1390I CCNGG 4 cut(s) 424, 514, 668, 986
Bme18I GGWCC 1 cut(s) 1043
BmeT110I CYCGRG 2 cut(s) 582, 1047
BmgT120I GGNCC 1 cut(s) 1043
BmrFI CCNGG 4 cut(s) 424, 514, 668, 986
BmsI GCATC 4 cut(s) 140, 287, 587, 1333
BpiI GAAGAC 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 1339
Bpu1102I GCTNAGC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 668
Bsa29I ATCGAT 1 cut(s) 1078
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 4 cut(s) 53, 423, 729, 1227
BsaWI WCCGGW 1 cut(s) 941
BsaXI ACNNNNNCTCC 2 cut(s) 1285, 1315
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 1293
Bse118I RCCGGY 1 cut(s) 941
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 874
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 3 cut(s) 424, 514, 986
BseCI ATCGAT 1 cut(s) 1078
BseDI CCNNGG 4 cut(s) 53, 423, 729, 1227
BseGI GGATG 4 cut(s) 340, 595, 740, 1169
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 211, 1293
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 708, 1353
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 356, 836
BseSI GKGCMC 2 cut(s) 729, 911
BseXI GCAGC 7 cut(s) 431, 575, 769, 1039, 1067, 1138, 1333
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 5, 989
BshTI ACCGGT 1 cut(s) 941
BshVI ATCGAT 1 cut(s) 1078
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 2 cut(s) 582, 1047
BsiSI CCGG 2 cut(s) 667, 942
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 211, 1293
BsmAI GTCTC 2 cut(s) 591, 597
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 2 cut(s) 5, 989
BsoBI CYCGRG 2 cut(s) 582, 1047
Bsp1286I GDGCHC 3 cut(s) 180, 729, 911
Bsp1407I TGTACA 1 cut(s) 1111
Bsp143I GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
Bsp1720I GCTNAGC 1 cut(s) 494
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 1 cut(s) 873
BspANI GGCC 2 cut(s) 5, 989
BspCNI CTCAG 2 cut(s) 709, 1352
BspDI ATCGAT 1 cut(s) 1078
BspMAI CTGCAG 1 cut(s) 1057
BspPI GGATC 4 cut(s) 120, 678, 1206, 1278
BspQI GCTCTTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 941
BsrGI TGTACA 1 cut(s) 1111
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 941
BssECI CCNNGG 4 cut(s) 53, 423, 729, 1227
BssMI GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
BssT1I CCWWGG 3 cut(s) 53, 729, 1227
Bst2UI CCWGG 3 cut(s) 424, 514, 986
Bst4CI ACNGT 5 cut(s) 182, 194, 301, 453, 528
Bst6I CTCTTC 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 1111
BstC8I GCNNGC 7 cut(s) 322, 561, 568, 855, 894, 1131, 1241
BstDEI CTNAG 3 cut(s) 494, 717, 1339
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 4 cut(s) 340, 595, 740, 1169
BstKTI GATC 6 cut(s) 115, 673, 1078, 1082, 1201, 1286
BstMAI GTCTC 2 cut(s) 591, 597
BstMBI GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
BstMWI GCNNNNNNNGC 1 cut(s) 1126
BstNI CCWGG 3 cut(s) 424, 514, 986
BstNSI RCATGY 3 cut(s) 867, 961, 1062
BstSCI CCNGG 4 cut(s) 422, 512, 666, 984
BstSFI CTRYAG 2 cut(s) 1053, 1134
BstSLI GKGCMC 2 cut(s) 729, 911
BstV1I GCAGC 7 cut(s) 431, 575, 769, 1039, 1067, 1138, 1333
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 1198
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 1198
Bsu15I ATCGAT 1 cut(s) 1078
BsuRI GGCC 2 cut(s) 5, 989
BsuTUI ATCGAT 1 cut(s) 1078
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 4 cut(s) 340, 595, 740, 1169
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 6 cut(s) 216, 272, 458, 524, 549, 857
Cac8I GCNNGC 7 cut(s) 322, 561, 568, 855, 894, 1131, 1241
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 1 cut(s) 1043
ClaI ATCGAT 1 cut(s) 1078
CseI GACGC 1 cut(s) 776
Csp6I GTAC 2 cut(s) 16, 1112
CspAI ACCGGT 1 cut(s) 941
CviAII CATG 8 cut(s) 54, 413, 489, 850, 864, 952, 958, 1059
CviQI GTAC 2 cut(s) 16, 1112
DdeI CTNAG 3 cut(s) 494, 717, 1339
DpnI GATC 6 cut(s) 114, 672, 1077, 1081, 1200, 1285
DpnII GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
DrdI GACNNNNNNGTC 1 cut(s) 611
DseDI GACNNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 3 cut(s) 53, 729, 1227
Eco147I AGGCCT 1 cut(s) 989
Eco47I GGWCC 1 cut(s) 1043
Eco57I CTGAAG 2 cut(s) 525, 714
Eco88I CYCGRG 2 cut(s) 582, 1047
EcoRII CCWGG 3 cut(s) 422, 512, 984
EcoT14I CCWWGG 3 cut(s) 53, 729, 1227
ErhI CCWWGG 3 cut(s) 53, 729, 1227
FaeI CATG 8 cut(s) 57, 416, 492, 853, 867, 955, 961, 1062
FaqI GGGAC 1 cut(s) 297
FatI CATG 8 cut(s) 53, 412, 488, 849, 863, 951, 957, 1058
FblI GTMKAC 2 cut(s) 501, 1015
Fnu4HI GCNGC 8 cut(s) 420, 564, 783, 873, 1053, 1056, 1127, 1322
FokI GGATG 4 cut(s) 347, 602, 727, 1156
Fsp4HI GCNGC 8 cut(s) 420, 564, 783, 873, 1053, 1056, 1127, 1322
FspBI CTAG 4 cut(s) 266, 387, 798, 822
GluI GCNGC 8 cut(s) 420, 564, 783, 873, 1053, 1056, 1127, 1322
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 5, 989
HapII CCGG 2 cut(s) 667, 942
HgaI GACGC 1 cut(s) 776
Hin1II CATG 8 cut(s) 57, 416, 492, 853, 867, 955, 961, 1062
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 6 cut(s) 310, 383, 641, 948, 1105, 1215
HpaII CCGG 2 cut(s) 667, 942
HphI GGTGA 3 cut(s) 107, 389, 1114
Hpy166II GTNNAC 3 cut(s) 68, 502, 1016
Hpy188I TCNGA 4 cut(s) 718, 1084, 1174, 1288
Hpy188III TCNNGA 5 cut(s) 249, 582, 636, 1158, 1310
Hpy8I GTNNAC 3 cut(s) 68, 502, 1016
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 2 cut(s) 324, 755
HpyCH4III ACNGT 5 cut(s) 182, 194, 301, 453, 528
HpyCH4IV ACGT 2 cut(s) 772, 837
HpyCH4V TGCA 9 cut(s) 93, 488, 559, 578, 785, 857, 867, 1055, 1126
HpyF10VI GCNNNNNNNGC 1 cut(s) 1126
HpyF3I CTNAG 3 cut(s) 494, 717, 1339
HpySE526I ACGT 2 cut(s) 772, 837
Hsp92II CATG 8 cut(s) 57, 416, 492, 853, 867, 955, 961, 1062
Kzo9I GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
LguI GCTCTTC 1 cut(s) 49
Lsp1109I GCAGC 7 cut(s) 431, 575, 769, 1039, 1067, 1138, 1333
LweI GCATC 4 cut(s) 140, 287, 587, 1333
MaeI CTAG 4 cut(s) 266, 387, 798, 822
MaeII ACGT 2 cut(s) 772, 837
MaeIII GTNAC 4 cut(s) 188, 295, 736, 833
MalI GATC 6 cut(s) 114, 672, 1077, 1081, 1200, 1285
MboI GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
MboII GAAGA 5 cut(s) 36, 159, 392, 462, 1097
MfeI CAATTG 1 cut(s) 1365
MflI RGATCY 1 cut(s) 1198
MhlI GDGCHC 3 cut(s) 180, 729, 911
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 11, 184, 404, 751, 876, 914, 1071, 1365
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 319
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 6 cut(s) 122, 198, 360, 444, 662, 750
MslI CAYNNNNRTG 3 cut(s) 862, 956, 962
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 667, 942
MspR9I CCNGG 4 cut(s) 424, 514, 668, 986
MunI CAATTG 1 cut(s) 1365
MvaI CCWGG 3 cut(s) 424, 514, 986
MwoI GCNNNNNNNGC 1 cut(s) 1126
NciI CCSGG 1 cut(s) 668
NcoI CCATGG 1 cut(s) 53
NdeII GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
NlaIII CATG 8 cut(s) 57, 416, 492, 853, 867, 955, 961, 1062
NmuCI GTSAC 1 cut(s) 833
NspI RCATGY 3 cut(s) 867, 961, 1062
PaeR7I CTCGAG 2 cut(s) 582, 1047
PceI AGGCCT 1 cut(s) 989
PciSI GCTCTTC 1 cut(s) 49
PfeI GAWTC 5 cut(s) 383, 641, 948, 1105, 1215
PflMI CCANNNNNTGG 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 666
PinAI ACCGGT 1 cut(s) 941
PkrI GCNGC 8 cut(s) 421, 565, 784, 874, 1054, 1057, 1128, 1323
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 422, 512, 984
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 3 cut(s) 422, 512, 984
PspPI GGNCC 1 cut(s) 1043
PspXI VCTCGAGB 1 cut(s) 1047
PstI CTGCAG 1 cut(s) 1057
PsuI RGATCY 1 cut(s) 1198
RsaI GTAC 2 cut(s) 17, 1113
RsaNI GTAC 2 cut(s) 16, 1112
RseI CAYNNNNRTG 3 cut(s) 862, 956, 962
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 6 cut(s) 122, 198, 360, 444, 662, 750
SatI GCNGC 8 cut(s) 420, 564, 783, 873, 1053, 1056, 1127, 1322
Sau3AI GATC 6 cut(s) 112, 670, 1075, 1079, 1198, 1283
Sau96I GGNCC 1 cut(s) 1043
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 4 cut(s) 424, 514, 668, 986
SduI GDGCHC 3 cut(s) 180, 729, 911
SfaNI GCATC 4 cut(s) 140, 287, 587, 1333
SfcI CTRYAG 2 cut(s) 1053, 1134
Sfr274I CTCGAG 2 cut(s) 582, 1047
SinI GGWCC 1 cut(s) 1043
SlaI CTCGAG 2 cut(s) 582, 1047
SmiMI CAYNNNNRTG 3 cut(s) 862, 956, 962
SmlI CTYRAG 3 cut(s) 582, 653, 1047
SmoI CTYRAG 3 cut(s) 582, 653, 1047
Sse9I AATT 8 cut(s) 11, 184, 404, 751, 876, 914, 1071, 1365
SseBI AGGCCT 1 cut(s) 989
SsiI CCGC 1 cut(s) 873
SspMI CTAG 4 cut(s) 266, 387, 798, 822
StuI AGGCCT 1 cut(s) 989
StyD4I CCNGG 4 cut(s) 422, 512, 666, 984
StyI CCWWGG 3 cut(s) 53, 729, 1227
TaaI ACNGT 5 cut(s) 182, 194, 301, 453, 528
TaiI ACGT 2 cut(s) 775, 840
TaqI TCGA 5 cut(s) 583, 923, 1048, 1078, 1282
TasI AATT 8 cut(s) 11, 184, 404, 751, 876, 914, 1071, 1365
TatI WGTACW 1 cut(s) 1111
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 5 cut(s) 383, 641, 948, 1105, 1215
Tru1I TTAA 6 cut(s) 122, 198, 360, 444, 662, 750
Tru9I TTAA 6 cut(s) 122, 198, 360, 444, 662, 750
TscAI CASTG 6 cut(s) 216, 279, 458, 531, 549, 864
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 7 cut(s) 419, 563, 782, 1052, 1055, 1126, 1321
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 3 cut(s) 429, 447, 940
TspRI CASTG 6 cut(s) 216, 279, 458, 531, 549, 864
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 1043
XceI RCATGY 3 cut(s) 867, 961, 1062
XhoI CTCGAG 2 cut(s) 582, 1047
XmiI GTMKAC 2 cut(s) 501, 1015
XspI CTAG 4 cut(s) 266, 387, 798, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.