Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022080.1

Orthogroup ID

OG0003899

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 495

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggatttgatggttatgcataaccaatgctgctttcaattttcttccagatctgagaagggaatccttgtaggatccaacaatgccagtgacatcacattcctcatgcttgcactaacttgcaatgccgcaattacaaaacttgggcaagcaaaagtttcctgtcctcaattctttttgacaatcccagatataaccggcagattgatggacatgctggttgattttattcccatacgccaggcttatcactccataaaggatattggtctacgcagagagttccttgttcattttggtcctcgagctgcagcatgtagagtgaaaaatgatggaggttcagaagaagttgttttctgggtggatcttgtgcagcggcagttgcagcgagctatagatagagagagaatatggtcaagactaacaacatctgaaagtatcgaggttagtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LETM1

Protein Analysis

151

Amino Acids

17.05

Weight (kDa)

7.66

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11560 AT3G11560 AT3G11560 AT3G11560 AT3G11560 AT5G06220 AT5G06220 AT5G06220
fragaria_vesca	FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540 FvH4_6g19540
malus_domestica	MD12G1031800.v1.1 MD14G1032100.v1.1
prunus_persica	Prupe.7G100800_v2.0.a1 Prupe.7G100800_v2.0.a1
pyrus_communis	pycom14g02890
rosa_chinensis	RchiOBHm_Chr3g0474881
rosa_laevigata	RLG00000023884
rosa_multiflora	Rmu_co8463519.1_g000001 Rmu_sc0008866.1_g000001 Rmu_sc0022080.1_g000001 Rmu_sc0022081.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406770
rosa_rugosa	Rorug03G0145100
rosa_samantha	Rh3AG194700 Rh3BG224500 Rh3CG219600 Rh3DG220200
rosa_wichuraiana	Rw3G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	271
AciI	CCGC	2 cut(s)	129, 376
AclWI	GGATC	3 cut(s)	69, 82, 372
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	2 cut(s)	308, 392
AluI	AGCT	2 cut(s)	308, 392
AlwI	GGATC	3 cut(s)	69, 82, 372
Ama87I	CYCGRG	1 cut(s)	303
ApeKI	GCWGC	5 cut(s)	30, 308, 311, 373, 385
AspS9I	GGNCC	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	74
BbvI	GCAGC	5 cut(s)	17, 295, 323, 385, 397
BccI	CCATC	3 cut(s)	4, 202, 326
BcgI	CGANNNNNNTGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	242
BfmI	CTRYAG	2 cut(s)	309, 393
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	7 cut(s)	31, 129, 309, 312, 374, 377, 386
BlsI	GCNGC	7 cut(s)	32, 130, 310, 313, 375, 378, 387
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	5 cut(s)	17, 295, 323, 385, 397
BsgI	GTGCAG	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	50, 74, 364
BspACI	CCGC	2 cut(s)	129, 376
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	3 cut(s)	69, 82, 372
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	197
BssMI	GATC	3 cut(s)	50, 74, 364
Bst2UI	CCWGG	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	111, 150, 390
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	53, 77, 367
BstMBI	GATC	3 cut(s)	50, 74, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 385
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	217, 318
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	2 cut(s)	309, 393
BstV1I	GCAGC	5 cut(s)	17, 295, 323, 385, 397
BstX2I	RGATCY	3 cut(s)	50, 74, 364
BstYI	RGATCY	3 cut(s)	50, 74, 364
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	111, 150, 390
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	299
CviAII	CATG	3 cut(s)	106, 214, 315
CviJI	RGCY	3 cut(s)	245, 308, 392
CviKI_1	RGCY	3 cut(s)	245, 308, 392
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	52, 76, 366
DpnII	GATC	3 cut(s)	50, 74, 364
Eco47I	GGWCC	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	21
FaeI	CATG	3 cut(s)	109, 217, 318
FatI	CATG	3 cut(s)	105, 213, 314
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	7 cut(s)	31, 129, 309, 312, 374, 377, 386
Fsp4HI	GCNGC	7 cut(s)	31, 129, 309, 312, 374, 377, 386
GluI	GCNGC	7 cut(s)	31, 129, 309, 312, 374, 377, 386
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	3 cut(s)	109, 217, 318
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	55, 343, 433
Hpy188III	TCNNGA	2 cut(s)	48, 417
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	19, 113, 123, 311, 373, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 385
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	109, 217, 318
Kzo9I	GATC	3 cut(s)	50, 74, 364
LpnPI	CCDG	9 cut(s)	61, 100, 175, 201, 203, 211, 227, 254, 343
Lsp1109I	GCAGC	5 cut(s)	17, 295, 323, 385, 397
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	52, 76, 366
MboI	GATC	3 cut(s)	50, 74, 364
MboII	GAAGA	2 cut(s)	36, 356
MflI	RGATCY	3 cut(s)	50, 74, 364
MluCI	AATT	3 cut(s)	38, 132, 170
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	113, 177, 312, 329, 436
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	382, 385
NdeII	GATC	3 cut(s)	50, 74, 364
NlaIII	CATG	3 cut(s)	109, 217, 318
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	217, 318
PaeR7I	CTCGAG	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	7 cut(s)	32, 130, 310, 313, 375, 378, 387
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	3 cut(s)	50, 74, 364
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	7 cut(s)	31, 129, 309, 312, 374, 377, 386
Sau3AI	GATC	3 cut(s)	50, 74, 364
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	4 cut(s)	310, 340, 394, 447
SfcI	CTRYAG	2 cut(s)	309, 393
Sfr274I	CTCGAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	3 cut(s)	38, 132, 170
SsiI	CCGC	2 cut(s)	129, 376
StyD4I	CCNGG	1 cut(s)	240
TaqI	TCGA	2 cut(s)	304, 441
TasI	AATT	3 cut(s)	38, 132, 170
TauI	GCSGC	2 cut(s)	131, 379
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	5 cut(s)	30, 308, 311, 373, 385
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	299
XceI	RCATGY	2 cut(s)	217, 318
XhoI	CTCGAG	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.