AT3G11590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013091
Physical Location & Seq
Forward (+)
3660298 .. 3663734
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11590.2

Sequence Viewer

Length: 1869 bp
ATGCCGAGGCAGAATCAAAGCGTAGAGAATCTACTTCTACTTGGCAAAATCAGGAAACGTGGTTGTTCTTCGCCGACATCGTCGACTTCTTCGATTCTCCGTGAAGGTTATAGATTCAAAAGAGCGATAGTTGTTGGTAAAAGAGGAGGATCCACTACTCCTGTACCTACATGGAGACTTATGGGTCGATCTCCTTCTCCACGAGCTTCCGGTGCTTTACACGCTGCTGCTTCTCCGTCGTCTCACTGCGGGAGCAAAACCGGTAAAGTATCAGCTCCTGCTCCTGTTTCAGCTAGGAAGTTAGCTGCGACGCTTTGGGAGATGAACGAGATGCCTTCACCTAGAGTTGTGGAGGAGGCTGCGCCAATGATTAGAAAGAGTAGAAAGGAGAGAATCGCGCCGCTTCCTCCGCCGAGATCATCGGTTCATTCTGGTTCTCTACCGCCTCATCTTTCTGATCCGTCGCATAGTCCAGTCTCTGAGAGGATGGAAAGATCAGGGACTGGGAGTCGCCAGAGAAGAGCTTCATCAACTGTGCAAAAGCTTAGGCTTGGAGACTGCAATGTGGGGGCTAGGGATCCTATTAACAGTGGCAGCTTCATGGATATTGAGACTCGATCACGGGTGGAGACACCGACTGGGTCAACTGTGGGTGTCAAAACACGGTTGAAGGATTGTAGTAACGCTCTCACAACATCAAAAGAGCTTCTCAAAATCATTAACAGAATGTGGGGTCAAGACGACCGCCCATCTTCTAGCATGTCCCTCGTCTCTGCTTTACATTCTGAGCTCGAAAGAGCTCGCTTACAGGTCAATCAGTTAATCCACGAACATAAACCGGAAAACAACGACATTAGCTACTTGATGAAGCGTTTTGCCGAAGAGAAAGCTGTGTGGAAAAGCAACGAGCAAGAAGTTGTTGAGGCTGCAATCGAATCTGTTGCTGGTGAGCTAGAAGTGGAGAGGAAGCTGAGGAGACGGTTTGAGAGCTTGAACAAGAAATTGGGCAAAGAATTGGCTGAAACAAAATCAGCTCTGATGAAAGCAGTTAAAGAAATCGAGAACGAGAAGCGAGCGAGAGTGATGGTTGAGAAAGTTTGTGATGAACTAGCAAGAGACATAAGCGAAGACAAAGCCGAAGTTGAAGAACTGAAGAGAGAATCTTTTAAAGTCAAAGAAGAAGTCGAAAAGGAAAGAGAGATGTTGCAGTTAGCAGATGCATTGCGGGAAGAGAGAGTACAGATGAAACTATCGGAGGCTAAACACCAGCTCGAGGAGAAAAACGCAGCTGTTGATAAGCTAAGAAACCAGCTTCAAACTTACCTCAAAGCAAAAAGATGTAAAGAGAAGACCCGTGAACCACCTCAAACTCAGCTACATAACGAAGAGGCTGGAGATTATTTAAACCATCACATCAGTTTTGGATCATATAACATCGAAGATGGAGAAGTCGAGAATGGAAATGAAGAAGGTTCAGGCGAAAGCGACCTTCATTCCATAGAACTGAACATAGACAACAAGAGCTATAAATGGCCTTATGGTGAAGAGAACAGAGGAAGAAAATCAACGCCAAGGAAAAGCCTTTCTTTACAAAGAAGCATATCGGATTGTGTTGATTGGGTTGTACAGAGCGAGAAGCTTCAAAAAAGTGGAGATGGAGGGTTGGATTGGGGAAGATCTATTGACGTTGAGCCTAAAGGGTATATAGATGAAACACAAGCTTATAAACCAAACAAGGCTTCTTCAAAAGATCACCATATCCTCTCGGGTTCGAGACTAAGTAACTTCCGCGGTGGATCTGTTTCAAAGTCGCGGTTATCGGATGCTTCGAAAGGCGAGAACCAGAATGCCAGAAAATCAAGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

622

Amino Acids

69.68

Weight (kDa)

9.38

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11590 AT3G11590
fragaria_vesca FvH4_6g19640
malus_domestica MD12G1032300.v1.1 MD14G1032400.v1.1
prunus_persica Prupe.7G100300_v2.0.a1
pyrus_communis pycom12g02990 pycom14g02920
rosa_chinensis RchiOBHm_Chr3g0474981
rosa_laevigata RLG00000023874
rosa_multiflora Rmu_sc0003093.1_g000007
rosa_roxburghii Rroxscaffold_6G00406670
rosa_rugosa Rorug03G0145900
rosa_samantha Rh3AG195200 Rh3BG225300 Rh3CG220200 Rh3DG220700
rosa_wichuraiana Rw3G017780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1725
AasI GACNNNNNNGTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 83
AccII CGCG 3 cut(s) 398, 1791, 1813
AciI CCGC 9 cut(s) 249, 401, 410, 443, 745, 1225, 1789, 1791, 1813
AclWI GGATC 7 cut(s) 144, 157, 452, 572, 585, 1432, 1804
AcuI CTGAAG 1 cut(s) 1172
AfaI GTAC 3 cut(s) 165, 1239, 1626
AfiI CCNNNNNNNGG 1 cut(s) 1273
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 8 cut(s) 118, 670, 994, 1145, 1316, 1643, 1746, 1806
AhdI GACNNNNNGTC 1 cut(s) 507
AjuI GAANNNNNNNTTGG 4 cut(s) 986, 1018, 1723, 1755
Alw21I GWGCWC 2 cut(s) 792, 802
AlwI GGATC 7 cut(s) 144, 157, 452, 572, 585, 1432, 1804
AlwNI CAGNNNCTG 3 cut(s) 278, 479, 503
Ama87I CYCGRG 2 cut(s) 1271, 1765
AoxI GGCC 1 cut(s) 1532
ApeKI GCWGC 7 cut(s) 224, 227, 305, 359, 594, 926, 1286
ArsI GACNNNNNNTTYG 2 cut(s) 1167, 1199
AsiGI ACCGGT 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 523
AspLEI GCGC 2 cut(s) 364, 400
AsuHPI GGTGA 4 cut(s) 330, 959, 1553, 1745
AsuII TTCGAA 1 cut(s) 1829
AvaI CYCGRG 2 cut(s) 1271, 1765
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BamHI GGATCC 2 cut(s) 149, 577
BanII GRGCYC 2 cut(s) 792, 802
BarI GAAGNNNNNNTAC 2 cut(s) 1221, 1253
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 1134, 1355
Bbv12I GWGCWC 2 cut(s) 792, 802
BbvCI CCTCAGC 1 cut(s) 971
BbvI GCAGC 7 cut(s) 211, 214, 292, 346, 606, 913, 1298
BccI CCATC 7 cut(s) 481, 757, 1078, 1416, 1436, 1649, 1857
BcgI CGANNNNNNTGC 4 cut(s) 748, 782, 923, 957
BfaI CTAG 6 cut(s) 294, 342, 573, 756, 953, 1109
BglII AGATCT 1 cut(s) 1676
BisI GCNGC 8 cut(s) 225, 228, 306, 360, 401, 595, 927, 1287
BlsI GCNGC 8 cut(s) 226, 229, 307, 361, 402, 596, 928, 1288
BmeRI GACNNNNNGTC 1 cut(s) 507
BmeT110I CYCGRG 2 cut(s) 1271, 1765
BmiI GGNNCC 2 cut(s) 151, 579
BmrI ACTGGG 2 cut(s) 513, 648
BmsI GCATC 3 cut(s) 321, 1207, 1813
BmuI ACTGGG 2 cut(s) 513, 648
BpiI GAAGAC 2 cut(s) 1134, 1355
BpmI CTGGAG 1 cut(s) 1413
Bpu10I CCTNAGC 2 cut(s) 545, 971
Bpu14I TTCGAA 1 cut(s) 1829
BsaJI CCNNGG 3 cut(s) 5, 1571, 1789
BsaWI WCCGGW 3 cut(s) 209, 260, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 1273
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 3 cut(s) 473, 508, 643
Bse3DI GCAATG 2 cut(s) 568, 1220
BseDI CCNNGG 3 cut(s) 5, 1571, 1789
BseGI GGATG 2 cut(s) 492, 1828
BseLI CCNNNNNNNGG 1 cut(s) 1273
BseMI GCAATG 2 cut(s) 568, 1220
BseMII CTCAG 4 cut(s) 471, 777, 962, 1385
BseNI ACTGG 3 cut(s) 473, 508, 643
BseRI GAGGAG 4 cut(s) 159, 368, 988, 1289
BseXI GCAGC 7 cut(s) 211, 214, 292, 346, 606, 913, 1298
Bsh1236I CGCG 3 cut(s) 398, 1791, 1813
Bsh1285I CGRYCG 1 cut(s) 745
BshFI GGCC 1 cut(s) 1534
BshTI ACCGGT 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 745
BsiHKAI GWGCWC 2 cut(s) 792, 802
BsiHKCI CYCGRG 2 cut(s) 1271, 1765
BsiSI CCGG 3 cut(s) 210, 261, 839
BslFI GGGAC 2 cut(s) 514, 748
BslI CCNNNNNNNGG 1 cut(s) 1273
BsmBI CGTCTC 3 cut(s) 246, 775, 970
BsmFI GGGAC 2 cut(s) 514, 748
BsmI GAATGC 1 cut(s) 1852
BsnI GGCC 1 cut(s) 1534
BsoBI CYCGRG 2 cut(s) 1271, 1765
Bsp119I TTCGAA 1 cut(s) 1829
Bsp1286I GDGCHC 2 cut(s) 792, 802
Bsp1407I TGTACA 1 cut(s) 1624
BspACI CCGC 9 cut(s) 249, 401, 410, 443, 745, 1225, 1789, 1791, 1813
BspANI GGCC 1 cut(s) 1534
BspCNI CTCAG 4 cut(s) 472, 778, 963, 1384
BspFNI CGCG 3 cut(s) 398, 1791, 1813
BspLI GGNNCC 2 cut(s) 151, 579
BspPI GGATC 7 cut(s) 144, 157, 452, 572, 585, 1432, 1804
BspQI GCTCTTC 1 cut(s) 514
BspT104I TTCGAA 1 cut(s) 1829
BsrDI GCAATG 2 cut(s) 568, 1220
BsrFI RCCGGY 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 1624
BsrI ACTGG 3 cut(s) 473, 508, 643
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 5, 1571, 1789
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 1571
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 5 cut(s) 535, 590, 649, 666, 981
Bst6I CTCTTC 6 cut(s) 514, 876, 1148, 1224, 1380, 1539
BstAUI TGTACA 1 cut(s) 1624
BstBI TTCGAA 1 cut(s) 1829
BstC8I GCNNGC 2 cut(s) 802, 1074
BstDEI CTNAG 7 cut(s) 480, 545, 786, 971, 1301, 1371, 1778
BstDSI CCRYGG 1 cut(s) 1789
BstF5I GGATG 2 cut(s) 492, 1828
BstFNI CGCG 3 cut(s) 398, 1791, 1813
BstHHI GCGC 2 cut(s) 364, 400
BstMCI CGRYCG 1 cut(s) 745
BstMWI GCNNNNNNNGC 3 cut(s) 212, 221, 409
BstNSI RCATGY 1 cut(s) 763
BstUI CGCG 3 cut(s) 398, 1791, 1813
BstV1I GCAGC 7 cut(s) 211, 214, 292, 346, 606, 913, 1298
BstV2I GAAGAC 2 cut(s) 1134, 1355
BstX2I RGATCY 4 cut(s) 149, 577, 1676, 1796
BstYI RGATCY 4 cut(s) 149, 577, 1676, 1796
BsuRI GGCC 1 cut(s) 1534
BtgI CCRYGG 1 cut(s) 1789
BtsCI GGATG 2 cut(s) 492, 1828
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 244, 595
Cac8I GCNNGC 2 cut(s) 802, 1074
CaiI CAGNNNCTG 3 cut(s) 278, 479, 503
CfoI GCGC 2 cut(s) 364, 400
Cfr10I RCCGGY 1 cut(s) 260
Cfr42I CCGCGG 1 cut(s) 1792
CseI GACGC 1 cut(s) 319
Csp6I GTAC 3 cut(s) 164, 1238, 1625
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 3 cut(s) 171, 601, 760
CviQI GTAC 3 cut(s) 164, 1238, 1625
DdeI CTNAG 7 cut(s) 480, 545, 786, 971, 1301, 1371, 1778
DraI TTTAAA 2 cut(s) 1168, 1404
DrdI GACNNNNNNGTC 1 cut(s) 183
DriI GACNNNNNGTC 1 cut(s) 507
DseDI GACNNNNNNGTC 1 cut(s) 183
Eam1104I CTCTTC 6 cut(s) 514, 876, 1148, 1224, 1380, 1539
Eam1105I GACNNNNNGTC 1 cut(s) 507
EarI CTCTTC 6 cut(s) 514, 876, 1148, 1224, 1380, 1539
EciI GGCGGA 1 cut(s) 399
Ecl136II GAGCTC 2 cut(s) 790, 800
Eco130I CCWWGG 1 cut(s) 1571
Eco24I GRGCYC 2 cut(s) 792, 802
Eco53kI GAGCTC 2 cut(s) 790, 800
Eco57I CTGAAG 1 cut(s) 1172
Eco88I CYCGRG 2 cut(s) 1271, 1765
EcoICRI GAGCTC 2 cut(s) 790, 800
EcoT14I CCWWGG 1 cut(s) 1571
EcoT22I ATGCAT 1 cut(s) 1222
EcoT38I GRGCYC 2 cut(s) 792, 802
ErhI CCWWGG 1 cut(s) 1571
Esp3I CGTCTC 3 cut(s) 246, 775, 970
FaeI CATG 3 cut(s) 174, 604, 763
FalI AAGNNNNNCTT 2 cut(s) 1570, 1602
FaqI GGGAC 2 cut(s) 514, 748
FatI CATG 3 cut(s) 170, 600, 759
FauI CCCGC 2 cut(s) 242, 1218
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 8 cut(s) 225, 228, 306, 360, 401, 595, 927, 1287
FokI GGATG 2 cut(s) 499, 1835
FriOI GRGCYC 2 cut(s) 792, 802
Fsp4HI GCNGC 8 cut(s) 225, 228, 306, 360, 401, 595, 927, 1287
FspBI CTAG 6 cut(s) 294, 342, 573, 756, 953, 1109
GlaI GCGC 2 cut(s) 363, 399
GluI GCNGC 8 cut(s) 225, 228, 306, 360, 401, 595, 927, 1287
GsuI CTGGAG 1 cut(s) 1413
HaeIII GGCC 1 cut(s) 1534
HapII CCGG 3 cut(s) 210, 261, 839
HgaI GACGC 1 cut(s) 319
HhaI GCGC 2 cut(s) 364, 400
Hin1II CATG 3 cut(s) 174, 604, 763
Hin6I GCGC 2 cut(s) 362, 398
HinP1I GCGC 2 cut(s) 362, 398
HincII GTYRAC 2 cut(s) 84, 645
HindII GTYRAC 2 cut(s) 84, 645
HindIII AAGCTT 3 cut(s) 542, 1637, 1719
HinfI GANTC 9 cut(s) 13, 28, 94, 114, 393, 508, 613, 935, 1160
HpaII CCGG 3 cut(s) 210, 261, 839
HphI GGTGA 4 cut(s) 330, 959, 1553, 1745
Hpy166II GTNNAC 3 cut(s) 84, 645, 1358
Hpy188I TCNGA 7 cut(s) 457, 481, 787, 1038, 1255, 1606, 1822
Hpy188III TCNNGA 6 cut(s) 52, 737, 1060, 1453, 1773, 1860
Hpy8I GTNNAC 3 cut(s) 84, 645, 1358
Hpy99I CGWCG 4 cut(s) 85, 241, 313, 466
HpyAV CCTTC 6 cut(s) 98, 204, 345, 664, 1463, 1499
HpyCH4III ACNGT 5 cut(s) 535, 590, 649, 666, 981
HpyCH4IV ACGT 2 cut(s) 58, 1686
HpyCH4V TGCA 5 cut(s) 538, 561, 929, 1207, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 221, 409
HpyF3I CTNAG 7 cut(s) 480, 545, 786, 971, 1301, 1371, 1778
HpySE526I ACGT 2 cut(s) 58, 1686
Hsp92II CATG 3 cut(s) 174, 604, 763
HspAI GCGC 2 cut(s) 362, 398
KspI CCGCGG 1 cut(s) 1792
LguI GCTCTTC 1 cut(s) 514
LmnI GCTCC 3 cut(s) 252, 280, 286
Lsp1109I GCAGC 7 cut(s) 211, 214, 292, 346, 606, 913, 1298
LweI GCATC 3 cut(s) 321, 1207, 1813
MaeI CTAG 6 cut(s) 294, 342, 573, 756, 953, 1109
MaeII ACGT 2 cut(s) 58, 1686
MaeIII GTNAC 2 cut(s) 680, 1781
MflI RGATCY 4 cut(s) 149, 577, 1676, 1796
MhlI GDGCHC 2 cut(s) 792, 802
MluCI AATT 2 cut(s) 1001, 1013
MlyI GAGTC 2 cut(s) 517, 607
MmeI TCCRAC 1 cut(s) 1644
Mph1103I ATGCAT 1 cut(s) 1222
MroXI GAANNNNTTC 1 cut(s) 523
MseI TTAA 6 cut(s) 585, 720, 821, 1050, 1167, 1403
MspA1I CMGCKG 2 cut(s) 1289, 1791
MspI CCGG 3 cut(s) 210, 261, 839
Mva1269I GAATGC 1 cut(s) 1852
MvnI CGCG 3 cut(s) 398, 1791, 1813
MwoI GCNNNNNNNGC 3 cut(s) 212, 221, 409
NlaIII CATG 3 cut(s) 174, 604, 763
NlaIV GGNNCC 2 cut(s) 151, 579
NmeAIII GCCGAG 2 cut(s) 30, 438
NsiI ATGCAT 1 cut(s) 1222
NspI RCATGY 1 cut(s) 763
NspV TTCGAA 1 cut(s) 1829
PaeR7I CTCGAG 1 cut(s) 1271
PciSI GCTCTTC 1 cut(s) 514
PcsI WCGNNNNNNNCGW 3 cut(s) 77, 89, 1826
PctI GAATGC 1 cut(s) 1852
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 7 cut(s) 13, 28, 94, 114, 393, 935, 1160
PflFI GACNNNGTC 2 cut(s) 79, 640
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 8 cut(s) 226, 229, 307, 361, 402, 596, 928, 1288
PleI GAGTC 2 cut(s) 516, 607
PpsI GAGTC 2 cut(s) 516, 607
PsiI TTATAA 1 cut(s) 1725
Psp124BI GAGCTC 2 cut(s) 792, 802
PspN4I GGNNCC 2 cut(s) 151, 579
PspXI VCTCGAGB 1 cut(s) 1271
PstNI CAGNNNCTG 3 cut(s) 278, 479, 503
PsuI RGATCY 4 cut(s) 149, 577, 1676, 1796
PsyI GACNNNGTC 2 cut(s) 79, 640
PvuII CAGCTG 1 cut(s) 1289
RsaI GTAC 3 cut(s) 165, 1239, 1626
RsaNI GTAC 3 cut(s) 164, 1238, 1625
SacI GAGCTC 2 cut(s) 792, 802
SacII CCGCGG 1 cut(s) 1792
SalI GTCGAC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 514
SaqAI TTAA 6 cut(s) 585, 720, 821, 1050, 1167, 1403
SatI GCNGC 8 cut(s) 225, 228, 306, 360, 401, 595, 927, 1287
SchI GAGTC 2 cut(s) 517, 607
SduI GDGCHC 2 cut(s) 792, 802
SfaNI GCATC 3 cut(s) 321, 1207, 1813
Sfr274I CTCGAG 1 cut(s) 1271
Sfr303I CCGCGG 1 cut(s) 1792
SfuI TTCGAA 1 cut(s) 1829
SgrBI CCGCGG 1 cut(s) 1792
SlaI CTCGAG 1 cut(s) 1271
SmlI CTYRAG 1 cut(s) 1271
SmoI CTYRAG 1 cut(s) 1271
Sse9I AATT 2 cut(s) 1001, 1013
SsiI CCGC 9 cut(s) 249, 401, 410, 443, 745, 1225, 1789, 1791, 1813
SspMI CTAG 6 cut(s) 294, 342, 573, 756, 953, 1109
SstI GAGCTC 2 cut(s) 792, 802
StyI CCWWGG 1 cut(s) 1571
TaaI ACNGT 5 cut(s) 535, 590, 649, 666, 981
TaiI ACGT 2 cut(s) 61, 1689
TasI AATT 2 cut(s) 1001, 1013
TatI WGTACW 2 cut(s) 1237, 1624
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 7 cut(s) 13, 28, 94, 114, 393, 935, 1160
Tru1I TTAA 6 cut(s) 585, 720, 821, 1050, 1167, 1403
Tru9I TTAA 6 cut(s) 585, 720, 821, 1050, 1167, 1403
TscAI CASTG 2 cut(s) 251, 595
TseI GCWGC 7 cut(s) 224, 227, 305, 359, 594, 926, 1286
TspGWI ACGGA 3 cut(s) 89, 225, 450
TspRI CASTG 2 cut(s) 251, 595
Tth111I GACNNNGTC 2 cut(s) 79, 640
XceI RCATGY 1 cut(s) 763
XhoI CTCGAG 1 cut(s) 1271
XmiI GTMKAC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 523
XspI CTAG 6 cut(s) 294, 342, 573, 756, 953, 1109
Zsp2I ATGCAT 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.