AT3G11660

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017103
Physical Location & Seq
Reverse (-)
3678595 .. 3679943
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11660.1

Sequence Viewer

Length: 630 bp
ATGAAAGACTGTGAAAACCACGGCCACTCTCGCCGGAAACTAATAAGGCGAATATTTTGGTCAATAATCTTCGTCCTCTTCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACCATCAAAGCCACGCTTCATCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACAACAAAATCGGCATTTACTACGACCGGCTTGACGTCTACGCTACTTACCGGAGCCAACAAATCACTTTCCCAACATCAATCCCTCCCACGTATCAGGGACACAAAGATGTCGACATCTGGTCGCCGTTTGTTTACGGAACCTCCGTTCCCATCGCTCCTTTTAACGGCGTTAGTCTTGACACCGATAAAGATAACGGTGTCGTTTTGTTGATCATTCGTGCTGATGGTAGAGTGAGGTGGAAGGTTGGGACTTTTATCACCGGGAAGTATCATCTTCATGTGAAGTGTCCAGCATATATAAACTTCGGTAACAAAGCTAACGGAGTTATCGTCGGAGACAACGCCGTTAAGTATACGTTTACCACTAGTTGTAGTGTTAGTGTGTGA

Protein Analysis

209

Amino Acids

23.66

Weight (kDa)

9.65

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 74 - 177 3.1e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11660
fragaria_vesca FvH4_6g20170
malus_domestica MD12G1038700.v1.1 MD14G1037400.v1.1
prunus_persica Prupe.7G097100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475681
rosa_laevigata RLG00000023824
rosa_multiflora Rmu_sc0000539.1_g000056
rosa_roxburghii Rroxscaffold_6G00406000
rosa_rugosa Rorug03G0150800
rosa_samantha Rh3CG225400 Rh3DG225900
rosa_wichuraiana Rw3G018210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AatII GACGTC 1 cut(s) 279
AccI GTMKAC 4 cut(s) 162, 279, 354, 596
AcoI YGGCCR 1 cut(s) 22
AcyI GRCGYC 2 cut(s) 153, 276
AfiI CCNNNNNNNGG 2 cut(s) 109, 407
AgsI TTSAA 1 cut(s) 172
AhdI GACNNNNNGTC 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 608
AloI GAACNNNNNNTCC 4 cut(s) 372, 373, 404, 405
AluBI AGCT 1 cut(s) 560
AluI AGCT 1 cut(s) 560
Alw26I GTCTC 2 cut(s) 181, 573
AoxI GGCC 1 cut(s) 22
AsuC2I CCSGG 2 cut(s) 232, 505
AsuHPI GGTGA 2 cut(s) 193, 493
BccI CCATC 3 cut(s) 133, 401, 461
BceAI ACGGC 4 cut(s) 37, 352, 424, 572
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 2 cut(s) 232, 505
BcoDI GTCTC 2 cut(s) 181, 573
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 1 cut(s) 609
Bme1390I CCNGG 2 cut(s) 232, 505
BmeRI GACNNNNNGTC 1 cut(s) 361
BmiI GGNNCC 3 cut(s) 236, 296, 382
BmrFI CCNGG 2 cut(s) 232, 505
BpuMI CCSGG 2 cut(s) 232, 505
BsaAI YACGTR 1 cut(s) 333
BsaHI GRCGYC 2 cut(s) 153, 276
BsaJI CCNNGG 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 6 cut(s) 180, 210, 368, 398, 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 407
Bse118I RCCGGY 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 109, 407
BseRI GAGGAG 2 cut(s) 92, 188
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 6 cut(s) 34, 180, 232, 268, 292, 504
BslFI GGGAC 2 cut(s) 354, 505
BslI CCNNNNNNNGG 2 cut(s) 109, 407
BsmAI GTCTC 2 cut(s) 181, 573
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 354, 505
BsnI GGCC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 453
BspANI GGCC 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 236, 296, 382
BsrFI RCCGGY 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 453
BssNAI GTATAC 1 cut(s) 597
BssNI GRCGYC 2 cut(s) 153, 276
Bst1107I GTATAC 1 cut(s) 597
Bst4CI ACNGT 3 cut(s) 11, 160, 440
Bst6I CTCTTC 2 cut(s) 83, 232
BstACI GRCGYC 2 cut(s) 153, 276
BstBAI YACGTR 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 2 cut(s) 181, 573
BstMBI GATC 1 cut(s) 453
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 230, 503
BstZ17I GTATAC 1 cut(s) 597
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 267
CseI GACGC 1 cut(s) 161
CviAII CATG 1 cut(s) 521
CviJI RGCY 5 cut(s) 24, 133, 271, 297, 560
CviKI_1 RGCY 5 cut(s) 24, 133, 271, 297, 560
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
DrdI GACNNNNNNGTC 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 83, 232
Eam1105I GACNNNNNGTC 1 cut(s) 361
EarI CTCTTC 2 cut(s) 83, 232
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 524
FaiI YATR 5 cut(s) 522, 538, 540, 542, 597
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 2 cut(s) 354, 505
FatI CATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 4 cut(s) 162, 279, 354, 596
FokI GGATG 1 cut(s) 128
FspBI CTAG 1 cut(s) 609
HaeIII GGCC 1 cut(s) 24
HapII CCGG 6 cut(s) 34, 180, 232, 268, 292, 504
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 2 cut(s) 153, 276
Hin1II CATG 1 cut(s) 524
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HpaII CCGG 6 cut(s) 34, 180, 232, 268, 292, 504
HphI GGTGA 2 cut(s) 193, 493
Hpy166II GTNNAC 6 cut(s) 163, 280, 355, 376, 597, 603
Hpy188I TCNGA 1 cut(s) 578
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 6 cut(s) 163, 280, 355, 376, 597, 603
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 2 cut(s) 178, 478
HpyCH4III ACNGT 3 cut(s) 11, 160, 440
HpyCH4IV ACGT 4 cut(s) 174, 276, 332, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpySE526I ACGT 4 cut(s) 174, 276, 332, 599
Hsp92I GRCGYC 2 cut(s) 153, 276
Hsp92II CATG 1 cut(s) 524
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 294, 403
LpnPI CCDG 9 cut(s) 47, 193, 245, 281, 305, 323, 346, 517, 546
MaeI CTAG 1 cut(s) 609
MaeII ACGT 4 cut(s) 174, 276, 332, 599
MaeIII GTNAC 1 cut(s) 551
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 5 cut(s) 61, 70, 79, 219, 509
MluCI AATT 1 cut(s) 114
MmeI TCCRAC 3 cut(s) 145, 231, 556
MseI TTAA 2 cut(s) 405, 591
MslI CAYNNNNRTG 2 cut(s) 348, 519
MspI CCGG 6 cut(s) 34, 180, 232, 268, 292, 504
MspR9I CCNGG 2 cut(s) 232, 505
MwoI GCNNNNNNNGC 1 cut(s) 30
NciI CCSGG 2 cut(s) 232, 505
NdeII GATC 1 cut(s) 453
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 3 cut(s) 236, 296, 382
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 384, 570
PfoI TCCNGGA 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 333
PspN4I GGNNCC 3 cut(s) 236, 296, 382
RseI CAYNNNNRTG 2 cut(s) 348, 519
SalI GTCGAC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 405, 591
Sau3AI GATC 1 cut(s) 453
ScrFI CCNGG 2 cut(s) 232, 505
SmiMI CAYNNNNRTG 2 cut(s) 348, 519
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 1 cut(s) 114
SspI AATATT 1 cut(s) 54
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 230, 503
TaaI ACNGT 3 cut(s) 11, 160, 440
TaiI ACGT 4 cut(s) 177, 279, 335, 602
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 114
Tru1I TTAA 2 cut(s) 405, 591
Tru9I TTAA 2 cut(s) 405, 591
TspDTI ATGAA 4 cut(s) 17, 70, 130, 509
TspGWI ACGGA 3 cut(s) 376, 393, 579
XmiI GTMKAC 4 cut(s) 162, 279, 354, 596
XspI CTAG 1 cut(s) 609
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.