Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0017103

Physical Location & Seq

Genomic Coordinates Forward (+)

12861154 .. 12862255

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G097100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGTACAAGGACTGCGGCCAACACGGATACAACAAGCGGCGAAGGAGGTTTAAACGCTGCTGCGCCGGGCTCCTAATCTTCAACTTCATCCTGCTCGTCACCATCCTCATCGTGTGGGCCATCCTCCAGCCCTCCAAACCCCGCTTCATCCTCCAAGACGTCACCGTCTTCAACTTCAACAACTCCGTACCCAACGTCTTCTCCTCCAGCTTCCAGGTCACCGTCTCCTCCCGCAACCCCAACGACAAGATCGGCATCTACTACGACAGGCTCAACATCTACGCGACATACCGTAATCAGCAGATCACCTTCTCCACGCTCATCCCGCCGGTGTACCAGGGTCACAAGGACGTCAACGTCTGGTCGCCGTTCATCTACGGCACCGAAGTCCCCATCGCGCCGTACAATTCCCTGGCGCTGGACCAGGACAAGAATGCCGGGTCGGTTTTTTTGCTGCTGAAGATGGACGGCCGGGTGAGGTGGAAGGTCGGGACTTTTATCTCGGGCAGGTACCATTTCTACGTTCGGTGCCCCGCTTTTATCCCTTTGGGTCCGAAGAACAACGGGGTTGTGGTCGGAAATAACGCCATCAAGTACCAGCTGCTGCAGCATTGCAAAGTGAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

211

Amino Acids

24.08

Weight (kDa)

9.89

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11660
fragaria_vesca	FvH4_6g20170
malus_domestica	MD12G1038700.v1.1 MD14G1037400.v1.1
prunus_persica	Prupe.7G097100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475681
rosa_laevigata	RLG00000023824
rosa_multiflora	Rmu_sc0000539.1_g000056
rosa_roxburghii	Rroxscaffold_6G00406000
rosa_rugosa	Rorug03G0150800
rosa_samantha	Rh3CG225400 Rh3DG225900
rosa_wichuraiana	Rw3G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	167, 359
AatII	GACGTC	2 cut(s)	165, 357
Acc36I	ACCTGC	1 cut(s)	501
Acc65I	GGTACC	1 cut(s)	513
AccB1I	GGYRCC	3 cut(s)	383, 513, 531
AccII	CGCG	2 cut(s)	287, 401
AciI	CCGC	6 cut(s)	18, 40, 145, 235, 329, 537
AcoI	YGGCCR	2 cut(s)	19, 472
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	2 cut(s)	162, 354
AfaI	GTAC	6 cut(s)	8, 192, 338, 407, 515, 599
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	85, 175, 181
AjnI	CCWGG	4 cut(s)	216, 339, 414, 426
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	2 cut(s)	213, 604
AluI	AGCT	2 cut(s)	213, 604
Alw26I	GTCTC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	3 cut(s)	19, 120, 472
ApeKI	GCWGC	6 cut(s)	60, 63, 457, 604, 607, 610
Asp718I	GGTACC	1 cut(s)	513
AspLEI	GCGC	3 cut(s)	68, 403, 421
AspS9I	GGNCC	3 cut(s)	120, 424, 554
AsuC2I	CCSGG	3 cut(s)	70, 442, 476
AsuHPI	GGTGA	5 cut(s)	94, 157, 214, 301, 490
AvaI	CYCGRG	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	424, 554
BaeGI	GKGCMC	1 cut(s)	536
BanI	GGYRCC	3 cut(s)	383, 513, 531
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	163, 193
BbvI	GCAGC	6 cut(s)	47, 50, 444, 591, 594, 622
BccI	CCATC	5 cut(s)	113, 131, 404, 460, 599
BceAI	ACGGC	4 cut(s)	355, 388, 397, 487
BciT130I	CCWGG	4 cut(s)	218, 341, 416, 428
BciVI	GTATCC	1 cut(s)	23
BcnI	CCSGG	3 cut(s)	70, 442, 476
BcoDI	GTCTC	1 cut(s)	232
BfmI	CTRYAG	1 cut(s)	608
BfoI	RGCGCY	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	23
BisI	GCNGC	8 cut(s)	19, 41, 61, 64, 458, 605, 608, 611
BlsI	GCNGC	8 cut(s)	20, 42, 62, 65, 459, 606, 609, 612
Bme1390I	CCNGG	7 cut(s)	70, 218, 341, 416, 428, 442, 476
Bme18I	GGWCC	2 cut(s)	424, 554
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	120, 424, 554
BmiI	GGNNCC	5 cut(s)	74, 385, 515, 533, 555
BmrFI	CCNGG	7 cut(s)	70, 218, 341, 416, 428, 442, 476
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	163, 193
BpmI	CTGGAG	2 cut(s)	113, 193
BpuMI	CCSGG	3 cut(s)	70, 442, 476
BsaBI	GATNNNNATC	1 cut(s)	257
BsaHI	GRCGYC	2 cut(s)	162, 354
BsaJI	CCNNGG	2 cut(s)	340, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	4 cut(s)	218, 341, 416, 428
BseDI	CCNNGG	2 cut(s)	340, 414
BseGI	GGATG	5 cut(s)	90, 105, 123, 150, 324
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	613
BseRI	GAGGAG	2 cut(s)	196, 220
BseSI	GKGCMC	1 cut(s)	536
BseX3I	CGGCCG	1 cut(s)	472
BseXI	GCAGC	6 cut(s)	47, 50, 444, 591, 594, 622
Bsh1236I	CGCG	2 cut(s)	287, 401
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	21, 122, 474
BshNI	GGYRCC	3 cut(s)	383, 513, 531
BsiEI	CGRYCG	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	4 cut(s)	69, 332, 441, 475
BslFI	GGGAC	2 cut(s)	377, 508
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	377, 508
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	3 cut(s)	21, 122, 474
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	75, 536
Bsp143I	GATC	2 cut(s)	252, 306
BspACI	CCGC	6 cut(s)	18, 40, 145, 235, 329, 537
BspANI	GGCC	3 cut(s)	21, 122, 474
BspFNI	CGCG	2 cut(s)	287, 401
BspLI	GGNNCC	5 cut(s)	74, 385, 515, 533, 555
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	501
BspT107I	GGYRCC	3 cut(s)	383, 513, 531
BsrDI	GCAATG	1 cut(s)	613
BsrFI	RCCGGY	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	340, 414
BssMI	GATC	2 cut(s)	252, 306
BssNI	GRCGYC	2 cut(s)	162, 354
Bst2UI	CCWGG	4 cut(s)	218, 341, 416, 428
Bst4CI	ACNGT	3 cut(s)	169, 226, 296
BstACI	GRCGYC	2 cut(s)	162, 354
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	5 cut(s)	90, 105, 123, 150, 324
BstFNI	CGCG	2 cut(s)	287, 401
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	3 cut(s)	68, 403, 421
BstKTI	GATC	2 cut(s)	255, 309
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	252, 306
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 610, 624
BstNI	CCWGG	4 cut(s)	218, 341, 416, 428
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	7 cut(s)	68, 216, 339, 414, 426, 440, 474
BstSFI	CTRYAG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	2 cut(s)	287, 401
BstV1I	GCAGC	6 cut(s)	47, 50, 444, 591, 594, 622
BstV2I	GAAGAC	2 cut(s)	163, 193
BstZI	CGGCCG	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	21, 122, 474
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	5 cut(s)	90, 105, 123, 150, 324
BveI	ACCTGC	1 cut(s)	501
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	3 cut(s)	68, 403, 421
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	120, 424, 554
Csp6I	GTAC	6 cut(s)	7, 191, 337, 406, 514, 598
CviJI	RGCY	8 cut(s)	21, 73, 122, 133, 213, 274, 474, 604
CviKI_1	RGCY	8 cut(s)	21, 73, 122, 133, 213, 274, 474, 604
CviQI	GTAC	6 cut(s)	7, 191, 337, 406, 514, 598
DpnI	GATC	2 cut(s)	254, 308
DpnII	GATC	2 cut(s)	252, 306
DraI	TTTAAA	1 cut(s)	55
DrdI	GACNNNNNNGTC	2 cut(s)	167, 359
DseDI	GACNNNNNNGTC	2 cut(s)	167, 359
EaeI	YGGCCR	2 cut(s)	19, 472
EagI	CGGCCG	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	424, 554
Eco52I	CGGCCG	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	505
Eco91I	GGTNACC	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	220
EcoRII	CCWGG	4 cut(s)	216, 339, 414, 426
EcoT38I	GRGCYC	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	232
FaiI	YATR	1 cut(s)	292
FaqI	GGGAC	2 cut(s)	377, 508
FauI	CCCGC	4 cut(s)	152, 242, 336, 544
Fnu4HI	GCNGC	8 cut(s)	19, 41, 61, 64, 458, 605, 608, 611
FokI	GGATG	5 cut(s)	77, 92, 110, 137, 311
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	8 cut(s)	19, 41, 61, 64, 458, 605, 608, 611
GlaI	GCGC	3 cut(s)	67, 402, 420
GluI	GCNGC	8 cut(s)	19, 41, 61, 64, 458, 605, 608, 611
GsuI	CTGGAG	2 cut(s)	113, 193
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	21, 122, 474
HapII	CCGG	4 cut(s)	69, 332, 441, 475
HhaI	GCGC	3 cut(s)	68, 403, 421
Hin1I	GRCGYC	2 cut(s)	162, 354
Hin6I	GCGC	3 cut(s)	66, 401, 419
HinP1I	GCGC	3 cut(s)	66, 401, 419
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HpaII	CCGG	4 cut(s)	69, 332, 441, 475
HphI	GGTGA	5 cut(s)	94, 157, 214, 301, 490
Hpy166II	GTNNAC	2 cut(s)	337, 358
Hpy188I	TCNGA	2 cut(s)	558, 581
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	2 cut(s)	337, 358
HpyAV	CCTTC	3 cut(s)	39, 322, 481
HpyCH4III	ACNGT	3 cut(s)	169, 226, 296
HpyCH4IV	ACGT	5 cut(s)	162, 198, 354, 360, 525
HpyCH4V	TGCA	2 cut(s)	610, 618
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 610, 624
HpySE526I	ACGT	5 cut(s)	162, 198, 354, 360, 525
Hsp92I	GRCGYC	2 cut(s)	162, 354
HspAI	GCGC	3 cut(s)	66, 401, 419
KpnI	GGTACC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	252, 306
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	6 cut(s)	47, 50, 444, 591, 594, 622
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	5 cut(s)	162, 198, 354, 360, 525
MaeIII	GTNAC	4 cut(s)	100, 163, 220, 344
MalI	GATC	2 cut(s)	254, 308
MboI	GATC	2 cut(s)	252, 306
MboII	GAAGA	5 cut(s)	73, 163, 193, 475, 571
MhlI	GDGCHC	2 cut(s)	75, 536
MluCI	AATT	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	8 cut(s)	42, 119, 137, 145, 164, 217, 241, 474
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	4 cut(s)	69, 332, 441, 475
MspR9I	CCNGG	7 cut(s)	70, 218, 341, 416, 428, 442, 476
MssI	GTTTAAAC	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	4 cut(s)	218, 341, 416, 428
MvnI	CGCG	2 cut(s)	287, 401
MwoI	GCNNNNNNNGC	3 cut(s)	328, 610, 624
NciI	CCSGG	3 cut(s)	70, 442, 476
NdeII	GATC	2 cut(s)	252, 306
NlaIV	GGNNCC	5 cut(s)	74, 385, 515, 533, 555
NmuCI	GTSAC	4 cut(s)	100, 163, 220, 344
PctI	GAATGC	1 cut(s)	442
PkrI	GCNGC	8 cut(s)	20, 42, 62, 65, 459, 606, 609, 612
PmeI	GTTTAAAC	1 cut(s)	55
Psp6I	CCWGG	4 cut(s)	216, 339, 414, 426
PspEI	GGTNACC	1 cut(s)	220
PspGI	CCWGG	4 cut(s)	216, 339, 414, 426
PspN4I	GGNNCC	5 cut(s)	74, 385, 515, 533, 555
PspPI	GGNCC	3 cut(s)	120, 424, 554
PstI	CTGCAG	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	6 cut(s)	8, 192, 338, 407, 515, 599
RsaNI	GTAC	6 cut(s)	7, 191, 337, 406, 514, 598
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	8 cut(s)	19, 41, 61, 64, 458, 605, 608, 611
Sau3AI	GATC	2 cut(s)	252, 306
Sau96I	GGNCC	3 cut(s)	120, 424, 554
ScrFI	CCNGG	7 cut(s)	70, 218, 341, 416, 428, 442, 476
SduI	GDGCHC	2 cut(s)	75, 536
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	608
SgrAI	CRCCGGYG	1 cut(s)	331
SinI	GGWCC	2 cut(s)	424, 554
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	6 cut(s)	18, 40, 145, 235, 329, 537
StyD4I	CCNGG	7 cut(s)	68, 216, 339, 414, 426, 440, 474
TaaI	ACNGT	3 cut(s)	169, 226, 296
TaiI	ACGT	5 cut(s)	165, 201, 357, 363, 528
TasI	AATT	1 cut(s)	409
TauI	GCSGC	2 cut(s)	21, 43
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	4 cut(s)	100, 163, 220, 344
TseI	GCWGC	6 cut(s)	60, 63, 457, 604, 607, 610
Tsp45I	GTSAC	4 cut(s)	100, 163, 220, 344
TspDTI	ATGAA	3 cut(s)	79, 139, 364
TspGWI	ACGGA	2 cut(s)	42, 178
VpaK11BI	GGWCC	2 cut(s)	424, 554
ZraI	GACGTC	2 cut(s)	163, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.