Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0017103

Physical Location & Seq

Genomic Coordinates Reverse (-)

4175234 .. 4175866

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1038700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCATCGAAGGACTGCGGCCACCATGGCCACAGCAAGCGACGGAAGATAATCCGCCGCTGCTGTGCCGGCCTCCTAATCTTCAACTTCATCCTCCTCGTCACAATTCTCATCGTGTGGGCTATCCTCCAGCCTTCCAAGCCCCGCTTCGTCCTCCAAGACGTCACTGTCTTCAACTTCAACACCTCCGTCCCCAACGTCTTCTCCTCCAGCTTCCAGGTCACCATCTCCTCCCGAAACCCTAACGACAAGCTCGGCATCTACTACGACAAGCTTGACGTCTACGCCACGTACCGTTCGCAGCAGATCACGTTCTCGACGCTCATCCCGCCGGTGTACCAAGGCCACAAGGACGTCAACATCTGGTCGCCGTTTATCTACGGCACCGAGGTCCCCATCGCACCGTACAACTCCATCGCTCTCGGGCAGGACCAGAATGCCGGGTCGGTTCTTATGCTCATCAAGATAGACGGCCGGGTCAGGTTTAAAGTCGGCACCTTCATAACCAGTCGGTACCATTTGTACGTCCGGTGCCCTGCTTTTATCCCTCTGGGTTCCCAGACCACCGGAGTTGTGGTCGGTAATAACGCCGTCAAGTACCAGCTGGTGCAGCGCTGCAGTGTGAGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

211

Amino Acids

23.61

Weight (kDa)

9.79

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	75 - 178	7.1e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11660
fragaria_vesca	FvH4_6g20170
malus_domestica	MD12G1038700.v1.1 MD14G1037400.v1.1
prunus_persica	Prupe.7G097100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475681
rosa_laevigata	RLG00000023824
rosa_multiflora	Rmu_sc0000539.1_g000056
rosa_roxburghii	Rroxscaffold_6G00406000
rosa_rugosa	Rorug03G0150800
rosa_samantha	Rh3CG225400 Rh3DG225900
rosa_wichuraiana	Rw3G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	167, 476
AatII	GACGTC	3 cut(s)	165, 282, 357
Acc65I	GGTACC	1 cut(s)	513
AccB1I	GGYRCC	4 cut(s)	383, 494, 513, 531
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	5 cut(s)	18, 55, 58, 145, 329
AcoI	YGGCCR	3 cut(s)	19, 28, 472
AcyI	GRCGYC	3 cut(s)	162, 279, 354
AfaI	GTAC	6 cut(s)	293, 338, 407, 515, 524, 599
AfeI	AGCGCT	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	85, 175, 181
AjnI	CCWGG	1 cut(s)	216
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	4 cut(s)	213, 253, 274, 604
AluI	AGCT	4 cut(s)	213, 253, 274, 604
Ama87I	CYCGRG	1 cut(s)	422
Aor51HI	AGCGCT	1 cut(s)	614
AoxI	GGCC	5 cut(s)	19, 28, 70, 343, 472
ApeKI	GCWGC	4 cut(s)	60, 301, 610, 615
Asp718I	GGTACC	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	391, 430
AsuC2I	CCSGG	2 cut(s)	442, 476
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	391, 430
BaeGI	GKGCMC	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	30
BanI	GGYRCC	4 cut(s)	383, 494, 513, 531
BbsI	GAAGAC	2 cut(s)	163, 193
BbvI	GCAGC	4 cut(s)	47, 313, 602, 622
BccI	CCATC	3 cut(s)	233, 404, 422
BceAI	ACGGC	4 cut(s)	355, 397, 487, 575
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	2 cut(s)	442, 476
BfmI	CTRYAG	1 cut(s)	616
BfoI	RGCGCY	1 cut(s)	616
BglI	GCCNNNNNGGC	1 cut(s)	27
BisI	GCNGC	6 cut(s)	19, 58, 61, 302, 611, 616
BlsI	GCNGC	6 cut(s)	20, 59, 62, 303, 612, 617
Bme1390I	CCNGG	3 cut(s)	218, 442, 476
Bme18I	GGWCC	2 cut(s)	391, 430
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	391, 430
BmiI	GGNNCC	6 cut(s)	385, 393, 496, 515, 533, 556
BmrFI	CCNGG	3 cut(s)	218, 442, 476
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	163, 193
BpmI	CTGGAG	2 cut(s)	113, 193
BpuMI	CCSGG	2 cut(s)	442, 476
BsaAI	YACGTR	1 cut(s)	291
BsaHI	GRCGYC	3 cut(s)	162, 279, 354
BsaJI	CCNNGG	3 cut(s)	25, 340, 387
BsaWI	WCCGGW	2 cut(s)	528, 566
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 561, 591
Bse118I	RCCGGY	2 cut(s)	68, 331
Bse1I	ACTGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	25, 340, 387
BseGI	GGATG	2 cut(s)	90, 324
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	3 cut(s)	86, 196, 220
BseSI	GKGCMC	1 cut(s)	536
BseX3I	CGGCCG	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	47, 313, 602, 622
BsgI	GTGCAG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	5 cut(s)	21, 30, 72, 345, 474
BshNI	GGYRCC	4 cut(s)	383, 494, 513, 531
BsiEI	CGRYCG	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	6 cut(s)	69, 332, 441, 475, 529, 567
BslFI	GGGAC	2 cut(s)	176, 377
BsmFI	GGGAC	2 cut(s)	176, 377
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	5 cut(s)	21, 30, 72, 345, 474
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	5 cut(s)	18, 55, 58, 145, 329
BspANI	GGCC	5 cut(s)	21, 30, 72, 345, 474
BspLI	GGNNCC	6 cut(s)	385, 393, 496, 515, 533, 556
BspMAI	CTGCAG	1 cut(s)	620
BspT107I	GGYRCC	4 cut(s)	383, 494, 513, 531
BsrFI	RCCGGY	2 cut(s)	68, 331
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	2 cut(s)	68, 331
BssECI	CCNNGG	3 cut(s)	25, 340, 387
BssMI	GATC	1 cut(s)	306
BssNI	GRCGYC	3 cut(s)	162, 279, 354
BssT1I	CCWWGG	2 cut(s)	25, 340
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	3 cut(s)	169, 296, 405
BstACI	GRCGYC	3 cut(s)	162, 279, 354
BstBAI	YACGTR	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	38, 70
BstDSI	CCRYGG	1 cut(s)	25
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	90, 324
BstH2I	RGCGCY	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	615
BstKTI	GATC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	306
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 69, 139, 328, 610, 624
BstNI	CCWGG	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	216, 440, 474
BstSFI	CTRYAG	1 cut(s)	616
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	4 cut(s)	47, 313, 602, 622
BstV2I	GAAGAC	2 cut(s)	163, 193
BstZI	CGGCCG	1 cut(s)	472
BsuRI	GGCC	5 cut(s)	21, 30, 72, 345, 474
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	2 cut(s)	382, 400
BtsCI	GGATG	2 cut(s)	90, 324
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	165, 625
Cac8I	GCNNGC	2 cut(s)	38, 70
CfoI	GCGC	1 cut(s)	615
Cfr10I	RCCGGY	2 cut(s)	68, 331
Cfr13I	GGNCC	2 cut(s)	391, 430
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	6 cut(s)	292, 337, 406, 514, 523, 598
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	6 cut(s)	292, 337, 406, 514, 523, 598
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DraI	TTTAAA	1 cut(s)	487
DrdI	GACNNNNNNGTC	2 cut(s)	167, 476
DseDI	GACNNNNNNGTC	2 cut(s)	167, 476
EaeI	YGGCCR	3 cut(s)	19, 28, 472
EagI	CGGCCG	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	25, 340
Eco47I	GGWCC	2 cut(s)	391, 430
Eco47III	AGCGCT	1 cut(s)	614
Eco52I	CGGCCG	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	25, 340
ErhI	CCWWGG	2 cut(s)	25, 340
FaeI	CATG	1 cut(s)	29
FaiI	YATR	4 cut(s)	27, 455, 503, 631
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	2 cut(s)	176, 377
FatI	CATG	1 cut(s)	25
FauI	CCCGC	2 cut(s)	152, 336
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	6 cut(s)	19, 58, 61, 302, 611, 616
FokI	GGATG	2 cut(s)	77, 311
Fsp4HI	GCNGC	6 cut(s)	19, 58, 61, 302, 611, 616
GlaI	GCGC	1 cut(s)	614
GluI	GCNGC	6 cut(s)	19, 58, 61, 302, 611, 616
GsuI	CTGGAG	2 cut(s)	113, 193
HaeII	RGCGCY	1 cut(s)	616
HaeIII	GGCC	5 cut(s)	21, 30, 72, 345, 474
HapII	CCGG	6 cut(s)	69, 332, 441, 475, 529, 567
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	615
Hin1I	GRCGYC	3 cut(s)	162, 279, 354
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	613
HinP1I	GCGC	1 cut(s)	613
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	272
HpaII	CCGG	6 cut(s)	69, 332, 441, 475, 529, 567
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	283, 337, 358
Hpy188III	TCNNGA	3 cut(s)	234, 316, 463
Hpy8I	GTNNAC	3 cut(s)	283, 337, 358
Hpy99I	CGWCG	2 cut(s)	45, 322
HpyAV	CCTTC	3 cut(s)	4, 144, 508
HpyCH4III	ACNGT	3 cut(s)	169, 296, 405
HpyCH4IV	ACGT	7 cut(s)	162, 198, 279, 290, 311, 354, 525
HpyCH4V	TGCA	2 cut(s)	610, 618
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 69, 139, 328, 610, 624
HpySE526I	ACGT	7 cut(s)	162, 198, 279, 290, 311, 354, 525
Hsp92I	GRCGYC	3 cut(s)	162, 279, 354
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	613
KpnI	GGTACC	1 cut(s)	517
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	306
Lsp1109I	GCAGC	4 cut(s)	47, 313, 602, 622
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	7 cut(s)	162, 198, 279, 290, 311, 354, 525
MaeIII	GTNAC	3 cut(s)	100, 163, 220
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	4 cut(s)	58, 73, 163, 193
MhlI	GDGCHC	1 cut(s)	536
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	30
Mox20I	TGGCCA	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	30
MspA1I	CMGCKG	2 cut(s)	60, 604
MspI	CCGG	6 cut(s)	69, 332, 441, 475, 529, 567
MspR9I	CCNGG	3 cut(s)	218, 442, 476
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	6 cut(s)	27, 69, 139, 328, 610, 624
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	2 cut(s)	442, 476
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	306
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	6 cut(s)	385, 393, 496, 515, 533, 556
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	3 cut(s)	100, 163, 220
PctI	GAATGC	1 cut(s)	442
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	6 cut(s)	20, 59, 62, 303, 612, 617
Ppu21I	YACGTR	1 cut(s)	291
PpuMI	RGGWCCY	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	6 cut(s)	385, 393, 496, 515, 533, 556
PspPI	GGNCC	2 cut(s)	391, 430
PspPPI	RGGWCCY	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	6 cut(s)	293, 338, 407, 515, 524, 599
RsaNI	GTAC	6 cut(s)	292, 337, 406, 514, 523, 598
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	6 cut(s)	19, 58, 61, 302, 611, 616
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	2 cut(s)	391, 430
ScrFI	CCNGG	3 cut(s)	218, 442, 476
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	616
SfiI	GGCCNNNNNGGCC	1 cut(s)	27
SgrAI	CRCCGGYG	1 cut(s)	331
SinI	GGWCC	2 cut(s)	391, 430
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	5 cut(s)	18, 55, 58, 145, 329
StyD4I	CCNGG	3 cut(s)	216, 440, 474
StyI	CCWWGG	2 cut(s)	25, 340
TaaI	ACNGT	3 cut(s)	169, 296, 405
TaiI	ACGT	7 cut(s)	165, 201, 282, 293, 314, 357, 528
TaqI	TCGA	2 cut(s)	8, 317
TasI	AATT	1 cut(s)	105
TauI	GCSGC	2 cut(s)	21, 60
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	172, 625
TseFI	GTSAC	3 cut(s)	100, 163, 220
TseI	GCWGC	4 cut(s)	60, 301, 610, 615
Tsp45I	GTSAC	3 cut(s)	100, 163, 220
TspDTI	ATGAA	2 cut(s)	79, 490
TspGWI	ACGGA	2 cut(s)	58, 178
TspRI	CASTG	2 cut(s)	172, 625
VpaK11BI	GGWCC	2 cut(s)	391, 430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	282
ZraI	GACGTC	3 cut(s)	163, 280, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.